Rorug01G0418200

Mediates both low-affinity uptake and efflux of sugar across the membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014504
Physical Location & Seq
Forward (+)
52045885 .. 52047299
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0418200.1

Sequence Viewer

Length: 885 bp
ATGGAACAAGCTTCTGCCCTAGACATGATCAGCCAACACCTTCTCAGTGAGTTTAGCTCCATGGATAGCTTCATCACCAGCCTCAACAACTGCACCTCCAACATTGATCAAACCCCTCAATATCAACAAGCTGATGATTCCTTCAAAGTCTCTGATTACTTACTCCCTTCTGAACCCGAATTCGAGTTCGAAACCAAGCCTCAGATTGTCCACCCCGAGCCATCCCCAAAGAAAAATTCGACTCTCAGTCACCGCAAGCCGGTCATCAACGTGGCAATACCAACAAGGCCGGCTCCAGCTGTGGCGCCTGCTGTTTCTGCGAGCGTCACAGCTGCTCAGAGTTTGATAAACTCTGAGAACGAGGCGAGGCACTACAGGGGCGTCCGTAGACGTCCTTGGGGCAAGTACGCTGCCGAAATCCGTGACCCTAACAAAAGGGGGTCACGGGTTTGGCTGGGGACCTTTGACACCGCCGTTGAAGCGGCCAAGGCTTATGATCTCGCGGCGTTTAAGTTGAGGGGGAGCAAAGCCATCCTCAACTTTCCTCTTGAAATTAACAGCAACATCGCGGCGGCTCAGCCTCTTCAGGCGAGCGTAGTTGGCCGGAAGAGGAGGAGGTCTGAGAGTGCAGAGGGTAACAGTGAGGGTGTGGAGAGTAATAAAGCGATGAAGAAGGAGGAGGAAACCATAAGCAGTGGCAACAGCACCTCACCAATTGGATCATCCATTTCATCAGCAACAGCACCAGTTAACTGTCCATTAACGCCGTCGAATTGGACGTCAATTTGGGATAGCAAAGACCTTGACGGAATTTTCAGTGTGCCTCCTTTGTCACCATTATCTCCTCACCCCTGTTTCGGATACAACCAGCTTCTAATTCATTGA

Protein Analysis

294

Amino Acids

32.07

Weight (kDa)

6.61

Isoelectric Point (pI)

64.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 124 - 175 8.1e-16 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53190
fragaria_vesca FvH4_7g31080 FvH4_7g31080 FvH4_7g31080
malus_domestica MD01G1215700.v1.1
prunus_persica Prupe.2G307700_v2.0.a1 Prupe.2G307800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0380151
rosa_laevigata RLG00000026326
rosa_roxburghii Rroxscaffold_4G00279630
rosa_rugosa Rorug01G0418200 Rorug01G0418300 Rorug01G0418400
rosa_samantha Rh1AG443200 Rh1BG398100 Rh1DG428900
rosa_wichuraiana Rw1G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 394, 782
AccB1I GGYRCC 1 cut(s) 304
AccI GTMKAC 1 cut(s) 388
AccII CGCG 2 cut(s) 503, 569
AciI CCGC 6 cut(s) 253, 471, 482, 503, 569, 572
AclWI GGATC 1 cut(s) 727
AcoI YGGCCR 2 cut(s) 483, 601
AcsI RAATTY 3 cut(s) 179, 235, 810
AcuI CTGAAG 1 cut(s) 569
AcyI GRCGYC 4 cut(s) 305, 381, 391, 779
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 2 cut(s) 259, 857
AgsI TTSAA 3 cut(s) 145, 479, 551
AhdI GACNNNNNGTC 1 cut(s) 246
AjuI GAANNNNNNNTTGG 2 cut(s) 220, 252
AluBI AGCT 7 cut(s) 11, 57, 69, 131, 299, 332, 871
AluI AGCT 7 cut(s) 11, 57, 69, 131, 299, 332, 871
Alw26I GTCTC 1 cut(s) 154
AlwI GGATC 1 cut(s) 727
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 3 cut(s) 287, 483, 601
ApeKI GCWGC 2 cut(s) 332, 410
ApoI RAATTY 3 cut(s) 179, 235, 810
ArsI GACNNNNNNTTYG 2 cut(s) 764, 796
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 459
AsuHPI GGTGA 5 cut(s) 67, 242, 702, 825, 839
AsuII TTCGAA 1 cut(s) 189
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 459
BanI GGYRCC 1 cut(s) 304
BbvI GCAGC 2 cut(s) 319, 397
BccI CCATC 2 cut(s) 229, 539
BceAI ACGGC 2 cut(s) 458, 751
BciVI GTATCC 1 cut(s) 854
BclI TGATCA 2 cut(s) 27, 106
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 373
BfoI RGCGCY 1 cut(s) 308
BfuI GTATCC 1 cut(s) 854
BisI GCNGC 6 cut(s) 333, 411, 483, 504, 570, 573
BlpI GCTNAGC 1 cut(s) 576
BlsI GCNGC 6 cut(s) 334, 412, 484, 505, 571, 574
Bme18I GGWCC 1 cut(s) 459
BmeRI GACNNNNNGTC 1 cut(s) 246
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 459
BmiI GGNNCC 3 cut(s) 294, 306, 460
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BpmI CTGGAG 1 cut(s) 279
Bpu1102I GCTNAGC 1 cut(s) 576
Bpu14I TTCGAA 1 cut(s) 189
BsaHI GRCGYC 4 cut(s) 305, 381, 391, 779
BsaJI CCNNGG 3 cut(s) 60, 395, 486
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 857
Bse118I RCCGGY 2 cut(s) 259, 289
Bse1I ACTGG 1 cut(s) 746
BseDI CCNNGG 3 cut(s) 60, 395, 486
BseGI GGATG 3 cut(s) 221, 531, 722
BseLI CCNNNNNNNGG 2 cut(s) 259, 857
BseMII CTCAG 7 cut(s) 58, 215, 259, 345, 350, 590, 612
BseNI ACTGG 1 cut(s) 746
BseRI GAGGAG 4 cut(s) 625, 628, 692, 834
BseXI GCAGC 2 cut(s) 319, 397
BseYI CCCAGC 1 cut(s) 454
BsgI GTGCAG 2 cut(s) 76, 648
Bsh1236I CGCG 2 cut(s) 503, 569
BshFI GGCC 3 cut(s) 289, 485, 603
BshNI GGYRCC 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 3 cut(s) 260, 290, 604
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 2 cut(s) 259, 857
BsmAI GTCTC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 472
BsnI GGCC 3 cut(s) 289, 485, 603
BsoBI CYCGRG 1 cut(s) 215
Bsp119I TTCGAA 1 cut(s) 189
Bsp143I GATC 4 cut(s) 27, 106, 496, 719
Bsp1720I GCTNAGC 1 cut(s) 576
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 6 cut(s) 253, 471, 482, 503, 569, 572
BspANI GGCC 3 cut(s) 289, 485, 603
BspCNI CTCAG 7 cut(s) 57, 214, 258, 346, 349, 589, 613
BspFNI CGCG 2 cut(s) 503, 569
BspLI GGNNCC 3 cut(s) 294, 306, 460
BspPI GGATC 1 cut(s) 727
BspT104I TTCGAA 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 304
BsrFI RCCGGY 2 cut(s) 259, 289
BsrI ACTGG 1 cut(s) 746
BssAI RCCGGY 2 cut(s) 259, 289
BssECI CCNNGG 3 cut(s) 60, 395, 486
BssMI GATC 4 cut(s) 27, 106, 496, 719
BssNI GRCGYC 4 cut(s) 305, 381, 391, 779
BssT1I CCWWGG 3 cut(s) 60, 395, 486
Bst4CI ACNGT 2 cut(s) 641, 755
Bst6I CTCTTC 2 cut(s) 588, 602
BstACI GRCGYC 4 cut(s) 305, 381, 391, 779
BstBI TTCGAA 1 cut(s) 189
BstC8I GCNNGC 5 cut(s) 257, 291, 309, 322, 592
BstDEI CTNAG 7 cut(s) 44, 201, 245, 336, 354, 576, 621
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 3 cut(s) 221, 531, 722
BstFNI CGCG 2 cut(s) 503, 569
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 4 cut(s) 30, 109, 499, 722
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 4 cut(s) 27, 106, 496, 719
BstMWI GCNNNNNNNGC 4 cut(s) 317, 479, 488, 600
BstSFI CTRYAG 1 cut(s) 373
BstUI CGCG 2 cut(s) 503, 569
BstV1I GCAGC 2 cut(s) 319, 397
BsuI GTATCC 1 cut(s) 854
BsuRI GGCC 3 cut(s) 289, 485, 603
BtgI CCRYGG 1 cut(s) 60
BtgZI GCGATG 2 cut(s) 550, 680
BtsCI GGATG 3 cut(s) 221, 531, 722
BtsI GCAGTG 1 cut(s) 700
BtsIMutI CAGTG 4 cut(s) 52, 646, 700, 823
Cac8I GCNNGC 5 cut(s) 257, 291, 309, 322, 592
CfoI GCGC 1 cut(s) 307
Cfr10I RCCGGY 2 cut(s) 259, 289
Cfr13I GGNCC 1 cut(s) 459
CseI GACGC 2 cut(s) 313, 370
Csp6I GTAC 1 cut(s) 406
CviAII CATG 2 cut(s) 25, 61
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 7 cut(s) 44, 201, 245, 336, 354, 576, 621
DinI GGCGCC 1 cut(s) 306
DpnI GATC 4 cut(s) 29, 108, 498, 721
DpnII GATC 4 cut(s) 27, 106, 496, 719
DriI GACNNNNNGTC 1 cut(s) 246
EaeI YGGCCR 2 cut(s) 483, 601
Eam1104I CTCTTC 2 cut(s) 588, 602
Eam1105I GACNNNNNGTC 1 cut(s) 246
EarI CTCTTC 2 cut(s) 588, 602
Eco130I CCWWGG 3 cut(s) 60, 395, 486
Eco47I GGWCC 1 cut(s) 459
Eco57I CTGAAG 1 cut(s) 569
Eco88I CYCGRG 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 459
EcoRI GAATTC 1 cut(s) 179
EcoT14I CCWWGG 3 cut(s) 60, 395, 486
EgeI GGCGCC 1 cut(s) 306
EheI GGCGCC 1 cut(s) 306
ErhI CCWWGG 3 cut(s) 60, 395, 486
FaeI CATG 2 cut(s) 28, 64
FaiI YATR 4 cut(s) 26, 62, 495, 689
FaqI GGGAC 1 cut(s) 472
FatI CATG 2 cut(s) 24, 60
FbaI TGATCA 2 cut(s) 27, 106
FblI GTMKAC 1 cut(s) 388
Fnu4HI GCNGC 6 cut(s) 333, 411, 483, 504, 570, 573
FokI GGATG 3 cut(s) 208, 518, 709
Fsp4HI GCNGC 6 cut(s) 333, 411, 483, 504, 570, 573
FspBI CTAG 1 cut(s) 20
GlaI GCGC 1 cut(s) 306
GluI GCNGC 6 cut(s) 333, 411, 483, 504, 570, 573
GsaI CCCAGC 1 cut(s) 458
GsuI CTGGAG 1 cut(s) 279
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 3 cut(s) 289, 485, 603
HapII CCGG 3 cut(s) 260, 290, 604
HgaI GACGC 2 cut(s) 313, 370
HhaI GCGC 1 cut(s) 307
Hin1I GRCGYC 4 cut(s) 305, 381, 391, 779
Hin1II CATG 2 cut(s) 28, 64
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 2 cut(s) 137, 241
HpaI GTTAAC 1 cut(s) 751
HpaII CCGG 3 cut(s) 260, 290, 604
HphI GGTGA 5 cut(s) 67, 242, 702, 825, 839
Hpy166II GTNNAC 3 cut(s) 211, 389, 751
Hpy188I TCNGA 7 cut(s) 154, 172, 204, 339, 355, 622, 860
Hpy188III TCNNGA 1 cut(s) 548
Hpy8I GTNNAC 3 cut(s) 211, 389, 751
Hpy99I CGWCG 1 cut(s) 772
HpyAV CCTTC 4 cut(s) 50, 151, 177, 667
HpyCH4III ACNGT 2 cut(s) 641, 755
HpyCH4IV ACGT 3 cut(s) 270, 391, 779
HpyCH4V TGCA 2 cut(s) 93, 629
HpyF10VI GCNNNNNNNGC 4 cut(s) 317, 479, 488, 600
HpyF3I CTNAG 7 cut(s) 44, 201, 245, 336, 354, 576, 621
HpySE526I ACGT 3 cut(s) 270, 391, 779
Hsp92I GRCGYC 4 cut(s) 305, 381, 391, 779
Hsp92II CATG 2 cut(s) 28, 64
HspAI GCGC 1 cut(s) 305
KasI GGCGCC 1 cut(s) 304
KroI GCCGGC 1 cut(s) 289
KroNI GCCGGC 1 cut(s) 291
Ksp22I TGATCA 2 cut(s) 27, 106
KspAI GTTAAC 1 cut(s) 751
Kzo9I GATC 4 cut(s) 27, 106, 496, 719
LmnI GCTCC 3 cut(s) 62, 298, 522
Lsp1109I GCAGC 2 cut(s) 319, 397
MaeI CTAG 1 cut(s) 20
MaeII ACGT 3 cut(s) 270, 391, 779
MaeIII GTNAC 6 cut(s) 248, 325, 422, 441, 635, 831
MalI GATC 4 cut(s) 29, 108, 498, 721
MboI GATC 4 cut(s) 27, 106, 496, 719
MboII GAAGA 3 cut(s) 575, 619, 682
MfeI CAATTG 1 cut(s) 714
MluCI AATT 8 cut(s) 179, 235, 552, 714, 772, 783, 810, 876
Mly113I GGCGCC 1 cut(s) 305
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 123
MroNI GCCGGC 1 cut(s) 289
MseI TTAA 4 cut(s) 510, 555, 750, 761
MslI CAYNNNNRTG 1 cut(s) 269
MspA1I CMGCKG 2 cut(s) 299, 332
MspI CCGG 3 cut(s) 260, 290, 604
MunI CAATTG 1 cut(s) 714
MvnI CGCG 2 cut(s) 503, 569
MwoI GCNNNNNNNGC 4 cut(s) 317, 479, 488, 600
NaeI GCCGGC 1 cut(s) 291
NarI GGCGCC 1 cut(s) 305
NcoI CCATGG 1 cut(s) 60
NdeII GATC 4 cut(s) 27, 106, 496, 719
NgoMIV GCCGGC 1 cut(s) 289
NlaIII CATG 2 cut(s) 28, 64
NlaIV GGNNCC 3 cut(s) 294, 306, 460
NmuCI GTSAC 5 cut(s) 248, 325, 422, 441, 831
NspV TTCGAA 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 776
PdiI GCCGGC 1 cut(s) 291
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 6 cut(s) 334, 412, 484, 505, 571, 574
PleI GAGTC 1 cut(s) 235
PluTI GGCGCC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 459
Psp5II RGGWCCY 1 cut(s) 459
PspFI CCCAGC 1 cut(s) 454
PspN4I GGNNCC 3 cut(s) 294, 306, 460
PspPI GGNCC 1 cut(s) 459
PspPPI RGGWCCY 1 cut(s) 459
PvuII CAGCTG 2 cut(s) 299, 332
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 4 cut(s) 510, 555, 750, 761
SatI GCNGC 6 cut(s) 333, 411, 483, 504, 570, 573
Sau3AI GATC 4 cut(s) 27, 106, 496, 719
Sau96I GGNCC 1 cut(s) 459
SchI GAGTC 1 cut(s) 235
SfcI CTRYAG 1 cut(s) 373
SfoI GGCGCC 1 cut(s) 306
SfuI TTCGAA 1 cut(s) 189
SinI GGWCC 1 cut(s) 459
SmiMI CAYNNNNRTG 1 cut(s) 269
Sse9I AATT 8 cut(s) 179, 235, 552, 714, 772, 783, 810, 876
SsiI CCGC 6 cut(s) 253, 471, 482, 503, 569, 572
SspDI GGCGCC 1 cut(s) 304
SspMI CTAG 1 cut(s) 20
StyI CCWWGG 3 cut(s) 60, 395, 486
TaaI ACNGT 2 cut(s) 641, 755
TaiI ACGT 3 cut(s) 273, 394, 782
TaqI TCGA 4 cut(s) 183, 189, 239, 770
TasI AATT 8 cut(s) 179, 235, 552, 714, 772, 783, 810, 876
TauI GCSGC 4 cut(s) 485, 506, 572, 575
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 4 cut(s) 510, 555, 750, 761
Tru9I TTAA 4 cut(s) 510, 555, 750, 761
TscAI CASTG 4 cut(s) 52, 646, 700, 823
TseFI GTSAC 5 cut(s) 248, 325, 422, 441, 831
TseI GCWGC 2 cut(s) 332, 410
Tsp45I GTSAC 5 cut(s) 248, 325, 422, 441, 831
TspDTI ATGAA 4 cut(s) 61, 683, 720, 869
TspGWI ACGGA 3 cut(s) 374, 410, 822
TspRI CASTG 4 cut(s) 52, 646, 700, 823
VpaK11BI GGWCC 1 cut(s) 459
XapI RAATTY 3 cut(s) 179, 235, 810
XmiI GTMKAC 1 cut(s) 388
XspI CTAG 1 cut(s) 20
ZraI GACGTC 2 cut(s) 392, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.