Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0014504

Physical Location & Seq

Genomic Coordinates Forward (+)

29223387 .. 29225237

Gene Structure 1851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G307700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGCCCAACCACAGCCCACAACAACAGCAAGGTAGTAGCACATAACAAGGCAAACACCAATGAACAAGAGAATAGGCAGACATTAAATAATAAGCAATTGACTATAGCGAGTGTCATAAGGAAGAAAAGCACAGAGGAGTTTTCATGCGTCACTGCATTGCTCAACTGTCTTCTTTACACTTGCTATGCACTGCCTGTTGTAAGCTACCGCTGGGAAAACTTTCTGCTGGTCACGATCAACGGCTTTAGGGGACTTCTCGAGTTCTCTTTCATTTTCATCTATTTCTGGTTTTCTACATCCAAAGGAAAGATGAAGGTAGCTGTGATTATGATACCTGTTATCATTGTGTTCTGCATCACCGCCATTATTCCAGCTTTTGTTTTCCATGACCACCATCATCGAACGGTGTTTGTAGGAAGCGTAGCGCTAGTGCCCTCTGTAGCAATGTATGCTGCTCCACTGGTGGTTGTGGACTGTGGCATCCTTCAGCTAGTGCTCTATTGCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

171

Amino Acids

19.08

Weight (kDa)

8.96

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53190
fragaria_vesca	FvH4_7g31080 FvH4_7g31080 FvH4_7g31080
malus_domestica	MD01G1215700.v1.1
prunus_persica	Prupe.2G307700_v2.0.a1 Prupe.2G307800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380151
rosa_laevigata	RLG00000026326
rosa_roxburghii	Rroxscaffold_4G00279630
rosa_rugosa	Rorug01G0418200 Rorug01G0418300 Rorug01G0418400
rosa_samantha	Rh1AG443200 Rh1BG398100 Rh1DG428900
rosa_wichuraiana	Rw1G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	211, 363
AcuI	CTGAAG	1 cut(s)	473
AfeI	AGCGCT	1 cut(s)	429
AluBI	AGCT	4 cut(s)	207, 323, 377, 493
AluI	AGCT	4 cut(s)	207, 323, 377, 493
Alw21I	GWGCWC	1 cut(s)	501
Ama87I	CYCGRG	1 cut(s)	260
Aor51HI	AGCGCT	1 cut(s)	429
AoxI	GGCC	1 cut(s)	4
ApaI	GGGCCC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	455
Asp700I	GAANNNNTTC	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	2 cut(s)	4, 5
AsuHPI	GGTGA	1 cut(s)	352
AvaI	CYCGRG	1 cut(s)	260
BaeGI	GKGCMC	2 cut(s)	8, 438
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	1 cut(s)	405
BceAI	ACGGC	1 cut(s)	259
BfaI	CTAG	2 cut(s)	431, 494
BfmI	CTRYAG	2 cut(s)	105, 441
BfoI	RGCGCY	1 cut(s)	431
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	2 cut(s)	4, 5
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	2 cut(s)	366, 492
BpiI	GAAGAC	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	510
Bse1I	ACTGG	1 cut(s)	468
Bse3DI	GCAATG	2 cut(s)	158, 453
BseGI	GGATG	2 cut(s)	299, 483
BseMI	GCAATG	2 cut(s)	158, 453
BseNI	ACTGG	1 cut(s)	468
BseRI	GAGGAG	1 cut(s)	152
BseSI	GKGCMC	2 cut(s)	8, 438
BseXI	GCAGC	1 cut(s)	442
BseYI	CCCAGC	1 cut(s)	213
BshFI	GGCC	1 cut(s)	6
BsiHKAI	GWGCWC	1 cut(s)	501
BsiHKCI	CYCGRG	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	6
BsoBI	CYCGRG	1 cut(s)	260
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	3 cut(s)	8, 438, 501
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	2 cut(s)	211, 363
BspANI	GGCC	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	6
BsrDI	GCAATG	2 cut(s)	158, 453
BsrI	ACTGG	1 cut(s)	468
BssMI	GATC	1 cut(s)	237
Bst4CI	ACNGT	3 cut(s)	170, 409, 479
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstBAI	YACGTR	1 cut(s)	510
BstF5I	GGATG	2 cut(s)	299, 483
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstSFI	CTRYAG	2 cut(s)	105, 441
BstSLI	GKGCMC	2 cut(s)	8, 438
BstV1I	GCAGC	1 cut(s)	442
BstV2I	GAAGAC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	299, 483
BtsI	GCAGTG	2 cut(s)	153, 191
BtsIMutI	CAGTG	3 cut(s)	153, 191, 461
CfoI	GCGC	1 cut(s)	430
Cfr13I	GGNCC	2 cut(s)	4, 5
CseI	GACGC	1 cut(s)	139
CviAII	CATG	2 cut(s)	147, 389
CviJI	RGCY	7 cut(s)	6, 17, 207, 246, 323, 377, 493
CviKI_1	RGCY	7 cut(s)	6, 17, 207, 246, 323, 377, 493
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	8
Eco47III	AGCGCT	1 cut(s)	429
Eco57I	CTGAAG	1 cut(s)	473
Eco88I	CYCGRG	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	2 cut(s)	150, 392
FaiI	YATR	8 cut(s)	45, 107, 119, 148, 189, 332, 390, 453
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	2 cut(s)	146, 388
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	2 cut(s)	286, 470
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	2 cut(s)	431, 494
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	1 cut(s)	456
GsaI	CCCAGC	1 cut(s)	217
HaeII	RGCGCY	1 cut(s)	431
HaeIII	GGCC	1 cut(s)	6
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	430
Hin1II	CATG	2 cut(s)	150, 392
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188III	TCNNGA	2 cut(s)	235, 260
Hpy8I	GTNNAC	1 cut(s)	475
HpyAV	CCTTC	2 cut(s)	310, 497
HpyCH4III	ACNGT	3 cut(s)	170, 409, 479
HpyCH4IV	ACGT	1 cut(s)	509
HpyCH4V	TGCA	4 cut(s)	158, 191, 357, 507
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpySE526I	ACGT	1 cut(s)	509
Hsp92II	CATG	2 cut(s)	150, 392
HspAI	GCGC	1 cut(s)	428
Kzo9I	GATC	1 cut(s)	237
LmnI	GCTCC	1 cut(s)	463
LpnPI	CCDG	7 cut(s)	199, 210, 215, 274, 351, 387, 449
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	2 cut(s)	366, 492
MaeI	CTAG	2 cut(s)	431, 494
MaeII	ACGT	1 cut(s)	509
MaeIII	GTNAC	2 cut(s)	151, 232
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	2 cut(s)	136, 164
MfeI	CAATTG	1 cut(s)	98
MhlI	GDGCHC	3 cut(s)	8, 438, 501
MluCI	AATT	1 cut(s)	98
MnlI	CCTC	2 cut(s)	130, 448
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	213
MunI	CAATTG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	452
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	2 cut(s)	150, 392
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	151, 232
PaeR7I	CTCGAG	1 cut(s)	260
PdmI	GAANNNNTTC	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	457
Ppu21I	YACGTR	1 cut(s)	510
PspFI	CCCAGC	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	6
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	2 cut(s)	4, 5
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	2 cut(s)	4, 5
SduI	GDGCHC	3 cut(s)	8, 438, 501
SetI	ASST	8 cut(s)	36, 209, 321, 325, 340, 379, 495, 512
SfaNI	GCATC	2 cut(s)	366, 492
SfcI	CTRYAG	2 cut(s)	105, 441
Sfr274I	CTCGAG	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	98
SsiI	CCGC	2 cut(s)	211, 363
SspMI	CTAG	2 cut(s)	431, 494
TaaI	ACNGT	3 cut(s)	170, 409, 479
TaiI	ACGT	1 cut(s)	512
TaqI	TCGA	2 cut(s)	261, 403
TasI	AATT	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	3 cut(s)	160, 198, 468
TseFI	GTSAC	2 cut(s)	151, 232
TseI	GCWGC	1 cut(s)	455
Tsp45I	GTSAC	2 cut(s)	151, 232
TspDTI	ATGAA	5 cut(s)	78, 135, 262, 268, 329
TspRI	CASTG	3 cut(s)	160, 198, 468
XhoI	CTCGAG	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	222
XspI	CTAG	2 cut(s)	431, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.