Rorug01G0418300

Mediates both low-affinity uptake and efflux of sugar across the membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014504
Physical Location & Seq
Forward (+)
52048693 .. 52050306
1614 bp
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UTR
Exon/CDS
Intron
Rorug01G0418300.1

Sequence Viewer

Length: 615 bp
ATGGCAGCAACCCAAGAACAAGATGAGTCAACTCTCGAACTCATACGCCAACATCTCTTAGGAGACTTCACCTTCACAGACAGCTTCATCACCAATCTCAACTACGAACAAAGCCCAGAAATCTCCTACTTCCAACCCATCAAATCCGAGTACTCCATATCCGAGTCCGAGTCCACCTCCCCCGTTTCAAACTACCGAAACCCGAAACCCGAACCCATGAGCTCCAATAGCGAGCCCAAGAGAAAGTCGAGTTCTTCCAACTCCAGCTCACCGACTGGCGAGGCCGCCAGGCATTACAGGGGAGTCCGGAGAAGGCCGTGGGGCAAGTTTGCGGCGGAGATCCGTGACCCGGCCCGGAAGGGGAGCCGGGTCTGGCTGGGGACGTTTGACACTGATGTGGATGCTGCTAAGGCCTATGATTGTGCTGCATTCAAGCTCAGGGGAAGGAAAGCTATACTGAATTTTCCGCTGGAGGCCGGAGAGTCCGACCCGCCAAGTAATACGGGTCGGAAAAGGAGGAAGTCAGTGAAGCAAGAGGAGGAGGCGGCGCCGGCTCCGGAGGCGGAAGAGGTGGAGGTTCAAAGTTGGGTAGATTGGGATGGAGAAGATGCCTGA

Protein Analysis

204

Amino Acids

22.88

Weight (kDa)

5.18

Isoelectric Point (pI)

73.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 98 - 148 1.3e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53190
fragaria_vesca FvH4_7g31080 FvH4_7g31080 FvH4_7g31080
malus_domestica MD01G1215700.v1.1
prunus_persica Prupe.2G307700_v2.0.a1 Prupe.2G307800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0380151
rosa_laevigata RLG00000026326
rosa_roxburghii Rroxscaffold_4G00279630
rosa_rugosa Rorug01G0418200 Rorug01G0418300 Rorug01G0418400
rosa_samantha Rh1AG443200 Rh1BG398100 Rh1DG428900
rosa_wichuraiana Rw1G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 547
AccIII TCCGGA 2 cut(s) 306, 556
AciI CCGC 7 cut(s) 285, 332, 335, 467, 491, 545, 563
AclWI GGATC 1 cut(s) 334
AcsI RAATTY 1 cut(s) 460
AcyI GRCGYC 1 cut(s) 548
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 2 cut(s) 349, 360
AgsI TTSAA 3 cut(s) 189, 433, 581
AjnI CCWGG 1 cut(s) 287
AleI CACNNNNGTG 1 cut(s) 395
AluBI AGCT 5 cut(s) 84, 222, 267, 436, 452
AluI AGCT 5 cut(s) 84, 222, 267, 436, 452
Alw21I GWGCWC 1 cut(s) 224
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 1 cut(s) 334
Aor13HI TCCGGA 2 cut(s) 306, 556
AoxI GGCC 5 cut(s) 282, 314, 351, 411, 474
ApeKI GCWGC 3 cut(s) 5, 404, 425
ApoI RAATTY 1 cut(s) 460
AspLEI GCGC 1 cut(s) 550
AspS9I GGNCC 1 cut(s) 352
AsuC2I CCSGG 3 cut(s) 350, 355, 368
AsuHPI GGTGA 3 cut(s) 61, 82, 261
BanI GGYRCC 1 cut(s) 547
BanII GRGCYC 2 cut(s) 224, 237
Bbv12I GWGCWC 1 cut(s) 224
BbvI GCAGC 3 cut(s) 17, 391, 412
BccI CCATC 2 cut(s) 146, 593
BceAI ACGGC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 289
BcnI CCSGG 3 cut(s) 350, 355, 368
BcoDI GTCTC 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 551
BisI GCNGC 6 cut(s) 6, 285, 333, 405, 426, 546
BlsI GCNGC 6 cut(s) 7, 286, 334, 406, 427, 547
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 4 cut(s) 289, 350, 355, 368
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 3 cut(s) 365, 549, 555
BmrFI CCNGG 4 cut(s) 289, 350, 355, 368
BmsI GCATC 2 cut(s) 391, 598
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpmI CTGGAG 2 cut(s) 247, 491
Bpu10I CCTNAGC 2 cut(s) 408, 437
BpuMI CCSGG 3 cut(s) 350, 355, 368
BsaHI GRCGYC 1 cut(s) 548
BsaJI CCNNGG 1 cut(s) 317
BsaWI WCCGGW 2 cut(s) 306, 556
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 360
Bse118I RCCGGY 1 cut(s) 550
Bse1I ACTGG 1 cut(s) 280
BseAI TCCGGA 2 cut(s) 306, 556
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 317
BseGI GGATG 2 cut(s) 406, 604
BseLI CCNNNNNNNGG 2 cut(s) 349, 360
BseMII CTCAG 1 cut(s) 451
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 2 cut(s) 551, 554
BseXI GCAGC 3 cut(s) 17, 391, 412
BseYI CCCAGC 1 cut(s) 376
BshFI GGCC 5 cut(s) 284, 316, 353, 413, 476
BshNI GGYRCC 1 cut(s) 547
BsiHKAI GWGCWC 1 cut(s) 224
BsiSI CCGG 7 cut(s) 307, 350, 355, 367, 477, 551, 557
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 2 cut(s) 349, 360
BsmAI GTCTC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 394
BsmI GAATGC 1 cut(s) 428
BsnI GGCC 5 cut(s) 284, 316, 353, 413, 476
Bsp1286I GDGCHC 2 cut(s) 224, 237
Bsp13I TCCGGA 2 cut(s) 306, 556
Bsp143I GATC 1 cut(s) 339
BspACI CCGC 7 cut(s) 285, 332, 335, 467, 491, 545, 563
BspANI GGCC 5 cut(s) 284, 316, 353, 413, 476
BspCNI CTCAG 1 cut(s) 450
BspEI TCCGGA 2 cut(s) 306, 556
BspLI GGNNCC 3 cut(s) 365, 549, 555
BspPI GGATC 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 547
BsrFI RCCGGY 1 cut(s) 550
BsrI ACTGG 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 550
BssECI CCNNGG 1 cut(s) 317
BssMI GATC 1 cut(s) 339
BssNI GRCGYC 1 cut(s) 548
Bst2UI CCWGG 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 561
BstACI GRCGYC 1 cut(s) 548
BstC8I GCNNGC 2 cut(s) 233, 552
BstDEI CTNAG 3 cut(s) 58, 408, 437
BstDSI CCRYGG 1 cut(s) 317
BstF5I GGATG 2 cut(s) 406, 604
BstH2I RGCGCY 1 cut(s) 551
BstHHI GCGC 1 cut(s) 550
BstKTI GATC 1 cut(s) 342
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 1 cut(s) 339
BstMWI GCNNNNNNNGC 4 cut(s) 228, 410, 551, 560
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 4 cut(s) 287, 348, 353, 366
BstV1I GCAGC 3 cut(s) 17, 391, 412
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BsuRI GGCC 5 cut(s) 284, 316, 353, 413, 476
BtgI CCRYGG 1 cut(s) 317
BtsCI GGATG 2 cut(s) 406, 604
BtsIMutI CAGTG 2 cut(s) 390, 531
Cac8I GCNNGC 2 cut(s) 233, 552
CfoI GCGC 1 cut(s) 550
Cfr10I RCCGGY 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 352
Csp6I GTAC 1 cut(s) 151
CviAII CATG 1 cut(s) 217
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 3 cut(s) 58, 408, 437
DinI GGCGCC 1 cut(s) 549
DpnI GATC 1 cut(s) 341
DpnII GATC 1 cut(s) 339
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
EciI GGCGGA 2 cut(s) 350, 578
Ecl136II GAGCTC 1 cut(s) 222
Eco147I AGGCCT 1 cut(s) 413
Eco24I GRGCYC 2 cut(s) 224, 237
Eco53kI GAGCTC 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 287
EcoT38I GRGCYC 2 cut(s) 224, 237
EgeI GGCGCC 1 cut(s) 549
EheI GGCGCC 1 cut(s) 549
FaeI CATG 1 cut(s) 220
FaiI YATR 5 cut(s) 44, 158, 218, 417, 455
FaqI GGGAC 1 cut(s) 394
FatI CATG 1 cut(s) 216
FauI CCCGC 1 cut(s) 498
Fnu4HI GCNGC 6 cut(s) 6, 285, 333, 405, 426, 546
FokI GGATG 2 cut(s) 413, 611
FriOI GRGCYC 2 cut(s) 224, 237
Fsp4HI GCNGC 6 cut(s) 6, 285, 333, 405, 426, 546
GlaI GCGC 1 cut(s) 549
GluI GCNGC 6 cut(s) 6, 285, 333, 405, 426, 546
GsaI CCCAGC 1 cut(s) 380
GsuI CTGGAG 2 cut(s) 247, 491
HaeII RGCGCY 1 cut(s) 551
HaeIII GGCC 5 cut(s) 284, 316, 353, 413, 476
HapII CCGG 7 cut(s) 307, 350, 355, 367, 477, 551, 557
HhaI GCGC 1 cut(s) 550
Hin1I GRCGYC 1 cut(s) 548
Hin1II CATG 1 cut(s) 220
Hin6I GCGC 1 cut(s) 548
HinP1I GCGC 1 cut(s) 548
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 5 cut(s) 26, 164, 170, 303, 482
HpaII CCGG 7 cut(s) 307, 350, 355, 367, 477, 551, 557
HphI GGTGA 3 cut(s) 61, 82, 261
Hpy166II GTNNAC 2 cut(s) 30, 174
Hpy188I TCNGA 5 cut(s) 148, 163, 169, 487, 510
Hpy188III TCNNGA 3 cut(s) 35, 307, 557
Hpy8I GTNNAC 2 cut(s) 30, 174
HpyAV CCTTC 4 cut(s) 82, 306, 352, 438
HpyCH4IV ACGT 1 cut(s) 383
HpyCH4V TGCA 1 cut(s) 428
HpyF10VI GCNNNNNNNGC 4 cut(s) 228, 410, 551, 560
HpyF3I CTNAG 3 cut(s) 58, 408, 437
HpySE526I ACGT 1 cut(s) 383
Hsp92I GRCGYC 1 cut(s) 548
Hsp92II CATG 1 cut(s) 220
HspAI GCGC 1 cut(s) 548
KasI GGCGCC 1 cut(s) 547
Kpn2I TCCGGA 2 cut(s) 306, 556
KroI GCCGGC 1 cut(s) 550
KroNI GCCGGC 1 cut(s) 552
Kzo9I GATC 1 cut(s) 339
LmnI GCTCC 3 cut(s) 227, 363, 559
Lsp1109I GCAGC 3 cut(s) 17, 391, 412
LweI GCATC 2 cut(s) 391, 598
MaeII ACGT 1 cut(s) 383
MaeIII GTNAC 1 cut(s) 344
MalI GATC 1 cut(s) 341
MboI GATC 1 cut(s) 339
MboII GAAGA 2 cut(s) 246, 578
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 2 cut(s) 224, 237
MluCI AATT 1 cut(s) 460
Mly113I GGCGCC 1 cut(s) 548
MlyI GAGTC 5 cut(s) 35, 173, 179, 312, 491
MmeI TCCRAC 4 cut(s) 157, 282, 488, 510
MroI TCCGGA 2 cut(s) 306, 556
MroNI GCCGGC 1 cut(s) 550
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 469
MspI CCGG 7 cut(s) 307, 350, 355, 367, 477, 551, 557
MspR9I CCNGG 4 cut(s) 289, 350, 355, 368
Mva1269I GAATGC 1 cut(s) 428
MvaI CCWGG 1 cut(s) 289
MwoI GCNNNNNNNGC 4 cut(s) 228, 410, 551, 560
NaeI GCCGGC 1 cut(s) 552
NarI GGCGCC 1 cut(s) 548
NciI CCSGG 3 cut(s) 350, 355, 368
NdeII GATC 1 cut(s) 339
NgoMIV GCCGGC 1 cut(s) 550
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 3 cut(s) 365, 549, 555
NmuCI GTSAC 1 cut(s) 344
OliI CACNNNNGTG 1 cut(s) 395
PceI AGGCCT 1 cut(s) 413
PctI GAATGC 1 cut(s) 428
PdiI GCCGGC 1 cut(s) 552
PkrI GCNGC 6 cut(s) 7, 286, 334, 406, 427, 547
PleI GAGTC 5 cut(s) 34, 172, 178, 311, 490
PluTI GGCGCC 1 cut(s) 551
PpsI GAGTC 5 cut(s) 34, 172, 178, 311, 490
Psp124BI GAGCTC 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 287
PspFI CCCAGC 1 cut(s) 376
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 3 cut(s) 365, 549, 555
PspPI GGNCC 1 cut(s) 352
PsuI RGATCY 1 cut(s) 339
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 395
SacI GAGCTC 1 cut(s) 224
SatI GCNGC 6 cut(s) 6, 285, 333, 405, 426, 546
Sau3AI GATC 1 cut(s) 339
Sau96I GGNCC 1 cut(s) 352
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 5 cut(s) 35, 173, 179, 312, 491
ScrFI CCNGG 4 cut(s) 289, 350, 355, 368
SduI GDGCHC 2 cut(s) 224, 237
SfaNI GCATC 2 cut(s) 391, 598
SfoI GGCGCC 1 cut(s) 549
SmiMI CAYNNNNRTG 1 cut(s) 395
Sse9I AATT 1 cut(s) 460
SseBI AGGCCT 1 cut(s) 413
SsiI CCGC 7 cut(s) 285, 332, 335, 467, 491, 545, 563
SspDI GGCGCC 1 cut(s) 547
SstI GAGCTC 1 cut(s) 224
StuI AGGCCT 1 cut(s) 413
StyD4I CCNGG 4 cut(s) 287, 348, 353, 366
TaiI ACGT 1 cut(s) 386
TaqI TCGA 2 cut(s) 36, 248
TasI AATT 1 cut(s) 460
TatI WGTACW 1 cut(s) 150
TauI GCSGC 3 cut(s) 287, 335, 548
TscAI CASTG 2 cut(s) 397, 531
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 3 cut(s) 5, 404, 425
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 1 cut(s) 76
TspGWI ACGGA 1 cut(s) 332
TspRI CASTG 2 cut(s) 397, 531
XapI RAATTY 1 cut(s) 460
ZrmI AGTACT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.