Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016511

Physical Location & Seq

Genomic Coordinates Forward (+)

21759329 .. 21760578

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTCTTCAGATCGGAAGGTTCTAAGTTTTGAAGAAGTTTCAAAGCACAACAAAACTAAGGATTGTTGGCTTATTATTTCCGGCAAGGTGTATGATGTGACTCCATTCATGGATGATCATCCTGGAGGCGATGAAGTCTTGTTGTCCTCAACAGGGAAAGATGCTACAAATGATTTTGAAGACGTTGGTCACAGCGACACTGCAAGGGACATGATGGACAAATATTTCATTGGTGAGATTGATTCGTCTAGTGTTCCAGCAACTAGGACATACGTTGCACCACAGCAACCAGCCTACAACCAAGACAAGACACCAGAATTCATTATCAAGATTCTTCAGTTCCTTGTTCCGATCTTGATCTTGGGATTGGCTCTTGTCGTCCGTCACTATACCAAGAAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0009507 GO:0009526 GO:0009527 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009707 GO:0009941 GO:0010319 GO:0012505 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042170 GO:0042175 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

134

Amino Acids

15.08

Weight (kDa)

5.11

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyt-b5	PF00173	10 - 80	5.3e-31	Cytochrome b5-like Heme/Steroid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53560
fragaria_vesca	FvH4_7g32530
malus_domestica	MD01G1226000.v1.1 MD07G1296500.v1.1
prunus_persica	Prupe.2G316100_v2.0.a1 Prupe.2G316100_v2.0.a1
pyrus_communis	pycom01g23460
rosa_chinensis	RchiOBHm_Chr1g0382371
rosa_roxburghii	Rroxscaffold_7G00167650
rosa_samantha	Rh1AG458500 Rh1BG414800 Rh1CG428900 Rh1DG446900
rosa_wichuraiana	Rw1G041250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	3 cut(s)	32, 42, 179
AjnI	CCWGG	1 cut(s)	121
ApoI	RAATTY	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	186
BccI	CCATC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	123
BclI	TGATCA	1 cut(s)	115
BfaI	CTAG	3 cut(s)	249, 264, 403
Bme1390I	CCNGG	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	151
BoxI	GACNNNNGTC	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	144
BsaBI	GATNNNNATC	2 cut(s)	117, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse8I	GATNNNNATC	2 cut(s)	117, 356
BseBI	CCWGG	1 cut(s)	123
BseGI	GGATG	2 cut(s)	118, 118
BseJI	GATNNNNATC	2 cut(s)	117, 356
BseLI	CCNNNNNNNGG	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	221
Bsp143I	GATC	4 cut(s)	10, 115, 351, 357
BssMI	GATC	4 cut(s)	10, 115, 351, 357
Bst2UI	CCWGG	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	23, 57
BstF5I	GGATG	2 cut(s)	118, 118
BstKTI	GATC	4 cut(s)	13, 118, 354, 360
BstMBI	GATC	4 cut(s)	10, 115, 351, 357
BstNI	CCWGG	1 cut(s)	123
BstPAI	GACNNNNGTC	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	118, 118
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
CviAII	CATG	2 cut(s)	109, 211
CviJI	RGCY	3 cut(s)	70, 293, 371
CviKI_1	RGCY	3 cut(s)	70, 293, 371
DdeI	CTNAG	2 cut(s)	23, 57
DpnI	GATC	4 cut(s)	12, 117, 353, 359
DpnII	GATC	4 cut(s)	10, 115, 351, 357
Eco57I	CTGAAG	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	121
FaeI	CATG	2 cut(s)	112, 214
FaiI	YATR	5 cut(s)	93, 110, 212, 271, 390
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	2 cut(s)	108, 210
FbaI	TGATCA	1 cut(s)	115
FokI	GGATG	2 cut(s)	105, 125
FspBI	CTAG	3 cut(s)	249, 264, 403
GsuI	CTGGAG	1 cut(s)	144
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	2 cut(s)	112, 214
HinfI	GANTC	3 cut(s)	100, 242, 331
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	3 cut(s)	10, 15, 351
Hpy188III	TCNNGA	2 cut(s)	328, 355
HpyAV	CCTTC	1 cut(s)	10
HpyCH4IV	ACGT	2 cut(s)	183, 273
HpyCH4V	TGCA	2 cut(s)	203, 278
HpyF3I	CTNAG	2 cut(s)	23, 57
HpySE526I	ACGT	2 cut(s)	183, 273
Hsp92II	CATG	2 cut(s)	112, 214
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	4 cut(s)	10, 115, 351, 357
LpnPI	CCDG	7 cut(s)	94, 108, 135, 138, 270, 303, 327
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	3 cut(s)	249, 264, 403
MaeII	ACGT	2 cut(s)	183, 273
MaeIII	GTNAC	3 cut(s)	97, 188, 383
MalI	GATC	4 cut(s)	12, 117, 353, 359
MboI	GATC	4 cut(s)	10, 115, 351, 357
MboII	GAAGA	3 cut(s)	44, 191, 326
MluCI	AATT	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	2 cut(s)	119, 157
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
NdeII	GATC	4 cut(s)	10, 115, 351, 357
NlaIII	CATG	2 cut(s)	112, 214
NmuCI	GTSAC	3 cut(s)	97, 188, 383
PfeI	GAWTC	2 cut(s)	242, 331
PfoI	TCCNGGA	1 cut(s)	121
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PshAI	GACNNNNGTC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
Sau3AI	GATC	4 cut(s)	10, 115, 351, 357
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	4 cut(s)	21, 90, 186, 276
SfaNI	GCATC	1 cut(s)	151
Sse9I	AATT	1 cut(s)	317
SspI	AATATT	1 cut(s)	224
SspMI	CTAG	3 cut(s)	249, 264, 403
StyD4I	CCNGG	1 cut(s)	121
TaiI	ACGT	2 cut(s)	186, 276
TasI	AATT	1 cut(s)	317
TfiI	GAWTC	2 cut(s)	242, 331
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	3 cut(s)	97, 188, 383
Tsp45I	GTSAC	3 cut(s)	97, 188, 383
TspDTI	ATGAA	4 cut(s)	97, 147, 217, 310
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	317
XspI	CTAG	3 cut(s)	249, 264, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.