Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0016511

Physical Location & Seq

Genomic Coordinates Forward (+)

53702332 .. 53704105

Gene Structure 1774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG414800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCTTCAGATCCGAAGGTTCACGTGTTTGAAGAGGTGGCCAAGCACAACCAGACCAAAGATTGCTGGCTTGTTATTTCTGGGAAGGTGTACGATGTAACCCCTTTCATGGATGATCATCCCGGAGGAGATGAAGTTCTGCTATCTGCAACAGGGAAAGACGCAACAAATGATTTTGAAGATGTTGGTCATAGTGATGCTGCCAGAGATATGATGGACAAGTACTACATTGGAGAGATTGATCCGTCAACTGTCCCATTAAAACGGACTTACATTCCACCACCGCAGACTCAGTACAATCCGGATAAGACATCCGAGTTTGTGATCAAGATTTTACAGTTCCTGGTGCCCCTGTTAATCTTGGGTTTAGCCTTTGCTGTCCGTCATTTTACCAAGAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0009507 GO:0009526 GO:0009527 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009707 GO:0009941 GO:0010319 GO:0012505 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042170 GO:0042175 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

134

Amino Acids

15.1

Weight (kDa)

5.12

Isoelectric Point (pI)

30.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyt-b5	PF00173	11 - 80	5.7e-31	Cytochrome b5-like Heme/Steroid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53560
fragaria_vesca	FvH4_7g32530
malus_domestica	MD01G1226000.v1.1 MD07G1296500.v1.1
prunus_persica	Prupe.2G316100_v2.0.a1 Prupe.2G316100_v2.0.a1
pyrus_communis	pycom01g23460
rosa_chinensis	RchiOBHm_Chr1g0382371
rosa_roxburghii	Rroxscaffold_7G00167650
rosa_samantha	Rh1AG458500 Rh1BG414800 Rh1CG428900 Rh1DG446900
rosa_wichuraiana	Rw1G041250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	346
AccIII	TCCGGA	1 cut(s)	301
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	2 cut(s)	5, 236
AcoI	YGGCCR	1 cut(s)	39
AcvI	CACGTG	1 cut(s)	25
AfaI	GTAC	3 cut(s)	92, 224, 296
AfiI	CCNNNNNNNGG	1 cut(s)	109
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	32, 179
AjnI	CCWGG	1 cut(s)	342
AloI	GAACNNNNNNTCC	2 cut(s)	120, 152
AlwI	GGATC	2 cut(s)	5, 236
AlwNI	CAGNNNCTG	1 cut(s)	343
Aor13HI	TCCGGA	1 cut(s)	301
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	200
AsuC2I	CCSGG	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	351
BalI	TGGCCA	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	346
BbrPI	CACGTG	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	344
BclI	TGATCA	2 cut(s)	115, 324
BcnI	CCSGG	1 cut(s)	123
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
BmcAI	AGTACT	1 cut(s)	224
Bme1390I	CCNGG	2 cut(s)	123, 344
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	2 cut(s)	123, 344
BmsI	GCATC	1 cut(s)	187
BpuMI	CCSGG	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	25
BsaBI	GATNNNNATC	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	301
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse8I	GATNNNNATC	1 cut(s)	117
BseAI	TCCGGA	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	344
BseGI	GGATG	3 cut(s)	118, 118, 311
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	305
BseRI	GAGGAG	1 cut(s)	141
BseSI	GKGCMC	1 cut(s)	351
BseXI	GCAGC	1 cut(s)	187
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	346
BsiSI	CCGG	2 cut(s)	123, 302
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp13I	TCCGGA	1 cut(s)	301
Bsp143I	GATC	4 cut(s)	10, 115, 241, 324
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	304
BspEI	TCCGGA	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	2 cut(s)	5, 236
BspT107I	GGYRCC	1 cut(s)	346
BssMI	GATC	4 cut(s)	10, 115, 241, 324
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	2 cut(s)	253, 339
Bst6I	CTCTTC	1 cut(s)	27
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	291
BstF5I	GGATG	3 cut(s)	118, 118, 311
BstKTI	GATC	4 cut(s)	13, 118, 244, 327
BstMBI	GATC	4 cut(s)	10, 115, 241, 324
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	2 cut(s)	121, 342
BstSLI	GKGCMC	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	41
BtsCI	GGATG	3 cut(s)	118, 118, 311
Cac8I	GCNNGC	1 cut(s)	68
CaiI	CAGNNNCTG	1 cut(s)	343
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	3 cut(s)	91, 223, 295
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	4 cut(s)	5, 41, 70, 371
CviKI_1	RGCY	4 cut(s)	5, 41, 70, 371
CviQI	GTAC	3 cut(s)	91, 223, 295
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	4 cut(s)	12, 117, 243, 326
DpnII	GATC	4 cut(s)	10, 115, 241, 324
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco72I	CACGTG	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	342
FaeI	CATG	1 cut(s)	112
FaiI	YATR	3 cut(s)	110, 192, 212
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	1 cut(s)	108
FbaI	TGATCA	2 cut(s)	115, 324
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	3 cut(s)	105, 125, 298
Fsp4HI	GCNGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	2 cut(s)	123, 302
HgaI	GACGC	1 cut(s)	170
Hin1II	CATG	1 cut(s)	112
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	123, 302
Hpy166II	GTNNAC	3 cut(s)	22, 91, 249
Hpy188I	TCNGA	3 cut(s)	10, 15, 316
Hpy188III	TCNNGA	2 cut(s)	302, 328
Hpy8I	GTNNAC	3 cut(s)	22, 91, 249
HpyAV	CCTTC	2 cut(s)	10, 79
HpyCH4III	ACNGT	2 cut(s)	253, 339
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	112
Kpn2I	TCCGGA	1 cut(s)	301
Ksp22I	TGATCA	2 cut(s)	115, 324
Kzo9I	GATC	4 cut(s)	10, 115, 241, 324
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	1 cut(s)	187
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	4 cut(s)	12, 117, 243, 326
MboI	GATC	4 cut(s)	10, 115, 241, 324
MboII	GAAGA	2 cut(s)	44, 191
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	351
MlsI	TGGCCA	1 cut(s)	41
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	2 cut(s)	28, 119
Mox20I	TGGCCA	1 cut(s)	41
MroI	TCCGGA	1 cut(s)	301
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	2 cut(s)	260, 356
MslI	CAYNNNNRTG	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	41
MspI	CCGG	2 cut(s)	123, 302
MspR9I	CCNGG	2 cut(s)	123, 344
MvaI	CCWGG	1 cut(s)	344
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	4 cut(s)	10, 115, 241, 324
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	1 cut(s)	348
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	1 cut(s)	283
PmaCI	CACGTG	1 cut(s)	25
PmlI	CACGTG	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	283
Ppu21I	YACGTR	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	342
PspCI	CACGTG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	348
PstNI	CAGNNNCTG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	3 cut(s)	92, 224, 296
RsaNI	GTAC	3 cut(s)	91, 223, 295
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	260, 356
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	4 cut(s)	10, 115, 241, 324
ScaI	AGTACT	1 cut(s)	224
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	123, 344
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	4 cut(s)	21, 27, 39, 90
SfaNI	GCATC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	195
SsiI	CCGC	1 cut(s)	284
StyD4I	CCNGG	2 cut(s)	121, 342
TaaI	ACNGT	2 cut(s)	253, 339
TaiI	ACGT	1 cut(s)	27
TatI	WGTACW	2 cut(s)	222, 294
Tru1I	TTAA	2 cut(s)	260, 356
Tru9I	TTAA	2 cut(s)	260, 356
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	97, 147
TspGWI	ACGGA	3 cut(s)	234, 280, 371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
ZrmI	AGTACT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.