Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0016511

Physical Location & Seq

Genomic Coordinates Forward (+)

31652920 .. 31655881

Gene Structure 2962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1226000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCATGGTTTAAGAAGTTCACACATCAGATGCAAGACATCCATTTTTGGACCACCACCACCGATGTATGTCAATGACTGGTATTGTTTTCTGCTTGGTTTGCCAGCACCCCCGAAGCGGCACGGTTCATCTCGCAGTCGCAGAGCCTGCTCTCTCTCGCAGATGGCTTCAGATCCAAAAGTTCACGTATTTGAAGAGGTAGCGAAGCACAACAAAACCAAAGATTGCTGGCTGATTATTGCCGGGAAGGTGTATGATGTGACACCATTCATGGATGATCATCCCGGAGGCGATGAAGTTCTTCTATCTGCAACTGGGAAAGATGCAACAAATGATTTCGAAGATGTTGGTCACAGTGATTCAGCCAGGGATATGATGGAGAAGTACTACATTGGTGAGGTTGATCAGTCAACTGTCCCATTGAAACGGACTTACATTCCACCACCACAAGGTCAATACAATCCTGACAAGACATCCGAATTCGTGATCAAGATTCTACAGTTTCTGGTTCCGCTCTTAATCTTGGGGTTGGCCTTCGCTGTCCGTCACTACACCAAGAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0009507 GO:0009526 GO:0009527 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009707 GO:0009941 GO:0010319 GO:0012505 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042170 GO:0042175 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

189

Amino Acids

21.19

Weight (kDa)

7.72

Isoelectric Point (pI)

61.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyt-b5	PF00173	65 - 134	6.5e-31	Cytochrome b5-like Heme/Steroid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53560
fragaria_vesca	FvH4_7g32530
malus_domestica	MD01G1226000.v1.1 MD07G1296500.v1.1
prunus_persica	Prupe.2G316100_v2.0.a1 Prupe.2G316100_v2.0.a1
pyrus_communis	pycom01g23460
rosa_chinensis	RchiOBHm_Chr1g0382371
rosa_roxburghii	Rroxscaffold_7G00167650
rosa_samantha	Rh1AG458500 Rh1BG414800 Rh1CG428900 Rh1DG446900
rosa_wichuraiana	Rw1G041250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	514
AciI	CCGC	2 cut(s)	118, 512
AclWI	GGATC	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	479
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	2 cut(s)	117, 449
AgsI	TTSAA	2 cut(s)	194, 424
AjnI	CCWGG	1 cut(s)	365
AlwI	GGATC	1 cut(s)	167
AlwNI	CAGNNNCTG	2 cut(s)	147, 505
AoxI	GGCC	1 cut(s)	531
ApoI	RAATTY	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	50
AsuC2I	CCSGG	2 cut(s)	244, 285
AsuHPI	GGTGA	1 cut(s)	407
AsuII	TTCGAA	1 cut(s)	339
AvaII	GGWCC	1 cut(s)	50
BccI	CCATC	2 cut(s)	157, 370
BciT130I	CCWGG	1 cut(s)	367
BclI	TGATCA	3 cut(s)	277, 403, 486
BcnI	CCSGG	2 cut(s)	244, 285
BfmI	CTRYAG	1 cut(s)	497
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
BmcAI	AGTACT	1 cut(s)	386
Bme1390I	CCNGG	3 cut(s)	244, 285, 367
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	510
BmrFI	CCNGG	3 cut(s)	244, 285, 367
BmrI	ACTGGG	1 cut(s)	324
BmsI	GCATC	2 cut(s)	20, 313
BmuI	ACTGGG	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	339
BpuMI	CCSGG	2 cut(s)	244, 285
BsaAI	YACGTR	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 449
Bse1I	ACTGG	2 cut(s)	83, 319
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	4 cut(s)	38, 280, 280, 473
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	2 cut(s)	117, 449
BseNI	ACTGG	2 cut(s)	83, 319
BshFI	GGCC	1 cut(s)	533
BsiSI	CCGG	2 cut(s)	243, 285
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	2 cut(s)	117, 449
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	533
Bsp119I	TTCGAA	1 cut(s)	339
Bsp143I	GATC	4 cut(s)	172, 277, 403, 486
BspACI	CCGC	2 cut(s)	118, 512
BspANI	GGCC	1 cut(s)	533
BspLI	GGNNCC	1 cut(s)	510
BspPI	GGATC	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	339
BsrBI	CCGCTC	1 cut(s)	514
BsrI	ACTGG	2 cut(s)	83, 319
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	4 cut(s)	172, 277, 403, 486
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	4 cut(s)	125, 356, 415, 501
Bst6I	CTCTTC	1 cut(s)	189
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	187
BstBI	TTCGAA	1 cut(s)	339
BstC8I	GCNNGC	3 cut(s)	105, 148, 230
BstF5I	GGATG	4 cut(s)	38, 280, 280, 473
BstKTI	GATC	4 cut(s)	175, 280, 406, 489
BstMBI	GATC	4 cut(s)	172, 277, 403, 486
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 147
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	3 cut(s)	242, 283, 365
BstSFI	CTRYAG	1 cut(s)	497
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	533
BtgZI	GCGATG	1 cut(s)	306
BtsCI	GGATG	4 cut(s)	38, 280, 280, 473
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	3 cut(s)	105, 148, 230
CaiI	CAGNNNCTG	2 cut(s)	147, 505
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	2 cut(s)	5, 271
CviJI	RGCY	5 cut(s)	146, 167, 232, 365, 533
CviKI_1	RGCY	5 cut(s)	146, 167, 232, 365, 533
CviQI	GTAC	1 cut(s)	385
DpnI	GATC	4 cut(s)	174, 279, 405, 488
DpnII	GATC	4 cut(s)	172, 277, 403, 486
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	153
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	365
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	8, 274
FaiI	YATR	5 cut(s)	6, 69, 255, 272, 374
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	2 cut(s)	4, 270
FbaI	TGATCA	3 cut(s)	277, 403, 486
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	4 cut(s)	25, 267, 287, 460
Fsp4HI	GCNGC	1 cut(s)	119
GluI	GCNGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	533
HapII	CCGG	2 cut(s)	243, 285
Hin1II	CATG	2 cut(s)	8, 274
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	2 cut(s)	359, 493
HpaII	CCGG	2 cut(s)	243, 285
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	3 cut(s)	20, 184, 411
Hpy188I	TCNGA	3 cut(s)	29, 172, 478
Hpy188III	TCNNGA	3 cut(s)	464, 484, 490
Hpy8I	GTNNAC	3 cut(s)	20, 184, 411
HpyAV	CCTTC	2 cut(s)	241, 544
HpyCH4III	ACNGT	4 cut(s)	125, 356, 415, 501
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	4 cut(s)	4, 33, 311, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 147
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	8, 274
Ksp22I	TGATCA	3 cut(s)	277, 403, 486
Kzo9I	GATC	4 cut(s)	172, 277, 403, 486
LweI	GCATC	2 cut(s)	20, 313
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	3 cut(s)	259, 350, 545
MalI	GATC	4 cut(s)	174, 279, 405, 488
MbiI	CCGCTC	1 cut(s)	514
MboI	GATC	4 cut(s)	172, 277, 403, 486
MboII	GAAGA	3 cut(s)	206, 293, 353
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	1 cut(s)	479
MnlI	CCTC	3 cut(s)	190, 281, 391
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	2 cut(s)	11, 518
MspI	CCGG	2 cut(s)	243, 285
MspR9I	CCNGG	3 cut(s)	244, 285, 367
MvaI	CCWGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	2 cut(s)	100, 147
NciI	CCSGG	2 cut(s)	244, 285
NdeII	GATC	4 cut(s)	172, 277, 403, 486
NlaIII	CATG	2 cut(s)	8, 274
NlaIV	GGNNCC	1 cut(s)	510
NmuCI	GTSAC	3 cut(s)	259, 350, 545
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	339
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	359, 493
PfoI	TCCNGGA	1 cut(s)	283
PkrI	GCNGC	1 cut(s)	120
Ppu21I	YACGTR	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	1 cut(s)	50
PstNI	CAGNNNCTG	2 cut(s)	147, 505
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
SaqAI	TTAA	2 cut(s)	11, 518
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	4 cut(s)	172, 277, 403, 486
Sau96I	GGNCC	1 cut(s)	50
ScaI	AGTACT	1 cut(s)	386
ScrFI	CCNGG	3 cut(s)	244, 285, 367
SetI	ASST	5 cut(s)	189, 201, 252, 402, 454
SfaNI	GCATC	2 cut(s)	20, 313
SfcI	CTRYAG	1 cut(s)	497
SfuI	TTCGAA	1 cut(s)	339
SinI	GGWCC	1 cut(s)	50
Sse9I	AATT	1 cut(s)	479
SsiI	CCGC	2 cut(s)	118, 512
StyD4I	CCNGG	3 cut(s)	242, 283, 365
TaaI	ACNGT	4 cut(s)	125, 356, 415, 501
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	339
TasI	AATT	1 cut(s)	479
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	2 cut(s)	359, 493
Tru1I	TTAA	2 cut(s)	11, 518
Tru9I	TTAA	2 cut(s)	11, 518
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	3 cut(s)	259, 350, 545
Tsp45I	GTSAC	3 cut(s)	259, 350, 545
TspDTI	ATGAA	3 cut(s)	117, 259, 309
TspGWI	ACGGA	2 cut(s)	442, 533
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	479
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	300
ZrmI	AGTACT	1 cut(s)	386
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.