Rh1CG428900

Cytochrome b5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016511
Physical Location & Seq
Forward (+)
68707999 .. 68709793
1795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG428900.1

Sequence Viewer

Length: 297 bp
ATGGATGATCATCCCGGAGGAGATGAAGTTCTGCTATCTGCAACAGGGAAAGACGCAACAAATGATTTTGAAGATGTTGGTCATAGTGATGCTGCCAGAGATATGATGGACAAGTACTACATTGGAGAGATTGATCCGTCAACTGTCCCATTAAAACGGACTTACATTCCGCCACCGCAAACTCAATACAATCCAGATAAGACATCCGAGTTTGTGATCAAGATTTTACAGTTCCTGGTGCCCCTGTTAATCTTGGGTTTAGCCTTTGCTGTCCGTCACTTTACCAAGAAAGAGTAG

Protein Analysis

98

Amino Acids

11.0

Weight (kDa)

4.87

Isoelectric Point (pI)

27.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt-b5 PF00173 1 - 44 3.7e-14 Cytochrome b5-like Heme/Steroid binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016511)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53560
fragaria_vesca FvH4_7g32530
malus_domestica MD01G1226000.v1.1 MD07G1296500.v1.1
prunus_persica Prupe.2G316100_v2.0.a1 Prupe.2G316100_v2.0.a1
pyrus_communis pycom01g23460
rosa_chinensis RchiOBHm_Chr1g0382371
rosa_roxburghii Rroxscaffold_7G00167650
rosa_samantha Rh1AG458500 Rh1BG414800 Rh1CG428900 Rh1DG446900
rosa_wichuraiana Rw1G041250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 238
AciI CCGC 2 cut(s) 170, 176
AclWI GGATC 1 cut(s) 128
AfaI GTAC 1 cut(s) 116
AgsI TTSAA 1 cut(s) 71
AjnI CCWGG 1 cut(s) 234
AloI GAACNNNNNNTCC 2 cut(s) 12, 44
AlwI GGATC 1 cut(s) 128
AlwNI CAGNNNCTG 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 15
BaeGI GKGCMC 1 cut(s) 243
BanI GGYRCC 1 cut(s) 238
BbvI GCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 100
BciT130I CCWGG 1 cut(s) 236
BclI TGATCA 2 cut(s) 7, 216
BcnI CCSGG 1 cut(s) 15
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmcAI AGTACT 1 cut(s) 116
Bme1390I CCNGG 2 cut(s) 15, 236
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 2 cut(s) 15, 236
BmsI GCATC 1 cut(s) 79
BpuMI CCSGG 1 cut(s) 15
BsaBI GATNNNNATC 1 cut(s) 9
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 1 cut(s) 236
BseGI GGATG 3 cut(s) 10, 10, 203
BseJI GATNNNNATC 1 cut(s) 9
BseRI GAGGAG 1 cut(s) 33
BseSI GKGCMC 1 cut(s) 243
BseXI GCAGC 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 15
BslFI GGGAC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 3 cut(s) 7, 133, 216
BspACI CCGC 2 cut(s) 170, 176
BspLI GGNNCC 1 cut(s) 240
BspPI GGATC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 238
BssMI GATC 3 cut(s) 7, 133, 216
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 2 cut(s) 145, 231
BstF5I GGATG 3 cut(s) 10, 10, 203
BstKTI GATC 3 cut(s) 10, 136, 219
BstMBI GATC 3 cut(s) 7, 133, 216
BstNI CCWGG 1 cut(s) 236
BstSCI CCNGG 2 cut(s) 13, 234
BstSLI GKGCMC 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 79
BtsCI GGATG 3 cut(s) 10, 10, 203
CaiI CAGNNNCTG 1 cut(s) 235
CseI GACGC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 115
CviJI RGCY 1 cut(s) 263
CviKI_1 RGCY 1 cut(s) 263
CviQI GTAC 1 cut(s) 115
DpnI GATC 3 cut(s) 9, 135, 218
DpnII GATC 3 cut(s) 7, 133, 216
EciI GGCGGA 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 234
FaiI YATR 2 cut(s) 84, 104
FaqI GGGAC 1 cut(s) 131
FbaI TGATCA 2 cut(s) 7, 216
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 2 cut(s) 17, 190
Fsp4HI GCNGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 93
HapII CCGG 1 cut(s) 15
HgaI GACGC 1 cut(s) 62
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HpaII CCGG 1 cut(s) 15
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 2 cut(s) 194, 220
Hpy8I GTNNAC 1 cut(s) 141
HpyCH4III ACNGT 2 cut(s) 145, 231
HpyCH4V TGCA 1 cut(s) 41
Ksp22I TGATCA 2 cut(s) 7, 216
Kzo9I GATC 3 cut(s) 7, 133, 216
LpnPI CCDG 7 cut(s) 28, 30, 109, 207, 221, 248, 257
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 275
MalI GATC 3 cut(s) 9, 135, 218
MboI GATC 3 cut(s) 7, 133, 216
MboII GAAGA 1 cut(s) 83
MhlI GDGCHC 1 cut(s) 243
MnlI CCTC 1 cut(s) 11
MseI TTAA 2 cut(s) 152, 248
MslI CAYNNNNRTG 1 cut(s) 87
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 2 cut(s) 15, 236
MvaI CCWGG 1 cut(s) 236
NciI CCSGG 1 cut(s) 15
NdeII GATC 3 cut(s) 7, 133, 216
NlaIV GGNNCC 1 cut(s) 240
NmuCI GTSAC 1 cut(s) 275
PfoI TCCNGGA 1 cut(s) 13
PkrI GCNGC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 240
PstNI CAGNNNCTG 1 cut(s) 235
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 2 cut(s) 152, 248
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 3 cut(s) 7, 133, 216
ScaI AGTACT 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 15, 236
SduI GDGCHC 1 cut(s) 243
SfaNI GCATC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 87
SsiI CCGC 2 cut(s) 170, 176
StyD4I CCNGG 2 cut(s) 13, 234
TaaI ACNGT 2 cut(s) 145, 231
TatI WGTACW 1 cut(s) 114
Tru1I TTAA 2 cut(s) 152, 248
Tru9I TTAA 2 cut(s) 152, 248
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 39
TspGWI ACGGA 3 cut(s) 126, 172, 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
ZrmI AGTACT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.