Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015395

Physical Location & Seq

Genomic Coordinates Forward (+)

21913883 .. 21914866

Gene Structure 984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGAATTCTCAGAGTCAGGGTAAAAACAAGAAGAAGAGGCTAACACAAGATCAAGTTAGACAACTGGAGAAGTGCTTCACTATGAACAAGAAGCTTGAGCCAGATCTGAAACTTCAACTGTCGAACCAGCTTGGTCTACCTCAAAGACAAGTCGCTGTCTGGTTCCAAAACAAGCGAGCCAGGTTCAAGACTCAGTCTCTTGAGGTCCAACACTGCACTCTTCAGTCCAAGCACGAAGCAGCTCTCTCCGACAAGGCAAAGTTAGAGCATCAAGTGCAGTTTCTCCAAGATGAGCTGAAGAGAGCAAGGAATCAGCTTGCTCTGTTCACAAATCAAGATTCTCCTGTTGATAATTCTAATCTTGGTTCTTGTGATGAAGATCATGATGATCAAGTGGTGGTATTCGACGAGCTTTACGCTTGCTTTGTTAGCAATGGACATGGATCTTCATCAACCTCATGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

156

Amino Acids

17.93

Weight (kDa)

7.7

Isoelectric Point (pI)

53.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	9 - 64	1.8e-16	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53980
fragaria_vesca	FvH4_3g19270
malus_domestica	MD03G1235200.v1.1 MD11G1255700.v1.1
pyrus_communis	pycom03g18170 pycom11g22600
rosa_chinensis	RchiOBHm_Chr5g0032341
rosa_laevigata	RLG00000033388
rosa_multiflora	Rmu_sc0002290.1_g000010
rosa_roxburghii	Rroxscaffold_1G00048080
rosa_rugosa	Rorug05G0131400
rosa_samantha	Rh5AG224500 Rh5BG225400 Rh5CG251000 Rh5DG230100
rosa_wichuraiana	Rw5G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	139
AclWI	GGATC	1 cut(s)	454
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	2 cut(s)	209, 320
AgsI	TTSAA	2 cut(s)	119, 190
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	6 cut(s)	97, 133, 245, 298, 319, 415
AluI	AGCT	6 cut(s)	97, 133, 245, 298, 319, 415
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	1 cut(s)	454
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	7
Asp700I	GAANNNNTTC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	184
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	204
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	89
BpuEI	CTTGAG	2 cut(s)	119, 224
BsaBI	GATNNNNATC	2 cut(s)	381, 451
Bse1I	ACTGG	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	442
Bse8I	GATNNNNATC	2 cut(s)	381, 451
BseBI	CCWGG	1 cut(s)	184
BseJI	GATNNNNATC	2 cut(s)	381, 451
BseMI	GCAATG	1 cut(s)	442
BseMII	CTCAG	2 cut(s)	26, 209
BseNI	ACTGG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	254
BsgI	GTGCAG	2 cut(s)	202, 299
BsmAI	GTCTC	1 cut(s)	204
Bsp143I	GATC	5 cut(s)	52, 106, 382, 391, 446
BspCNI	CTCAG	2 cut(s)	25, 208
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	454
BsrDI	GCAATG	1 cut(s)	442
BsrI	ACTGG	1 cut(s)	72
BssMI	GATC	5 cut(s)	52, 106, 382, 391, 446
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	123
Bst6I	CTCTTC	3 cut(s)	32, 228, 296
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstC8I	GCNNGC	3 cut(s)	180, 321, 424
BstDEI	CTNAG	2 cut(s)	12, 195
BstKTI	GATC	5 cut(s)	55, 109, 385, 394, 449
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	5 cut(s)	52, 106, 382, 391, 446
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 432
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	106, 446
BstYI	RGATCY	2 cut(s)	106, 446
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	3 cut(s)	180, 321, 424
CciI	TCATGA	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	208
CviAII	CATG	3 cut(s)	386, 443, 462
CviJI	RGCY	9 cut(s)	43, 97, 103, 133, 182, 245, 298, 319, 415
CviKI_1	RGCY	9 cut(s)	43, 97, 103, 133, 182, 245, 298, 319, 415
DdeI	CTNAG	2 cut(s)	12, 195
DpnI	GATC	5 cut(s)	54, 108, 384, 393, 448
DpnII	GATC	5 cut(s)	52, 106, 382, 391, 446
Eam1104I	CTCTTC	3 cut(s)	32, 228, 296
EarI	CTCTTC	3 cut(s)	32, 228, 296
Eco47I	GGWCC	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	209, 320
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	182
FaeI	CATG	3 cut(s)	389, 446, 465
FaiI	YATR	4 cut(s)	86, 387, 444, 463
FatI	CATG	3 cut(s)	385, 442, 461
FbaI	TGATCA	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	243
GluI	GCNGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	89
Hin1II	CATG	3 cut(s)	389, 446, 465
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	4 cut(s)	16, 193, 313, 341
Hpy166II	GTNNAC	2 cut(s)	140, 330
Hpy188I	TCNGA	4 cut(s)	15, 111, 253, 470
Hpy188III	TCNNGA	4 cut(s)	190, 203, 338, 386
Hpy8I	GTNNAC	2 cut(s)	140, 330
Hpy99I	CGWCG	1 cut(s)	413
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	219, 280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 432
HpyF3I	CTNAG	2 cut(s)	12, 195
Hsp92II	CATG	3 cut(s)	389, 446, 465
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	5 cut(s)	52, 106, 382, 391, 446
LpnPI	CCDG	8 cut(s)	5, 53, 117, 143, 148, 169, 196, 360
Lsp1109I	GCAGC	1 cut(s)	254
LweI	GCATC	1 cut(s)	280
MalI	GATC	5 cut(s)	54, 108, 384, 393, 448
MboI	GATC	5 cut(s)	52, 106, 382, 391, 446
MboII	GAAGA	6 cut(s)	46, 49, 215, 313, 392, 441
MflI	RGATCY	2 cut(s)	106, 446
MluCI	AATT	2 cut(s)	7, 355
MlyI	GAGTC	2 cut(s)	25, 187
MmeI	TCCRAC	2 cut(s)	235, 276
MnlI	CCTC	4 cut(s)	33, 153, 199, 469
MroXI	GAANNNNTTC	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	277, 432
NdeII	GATC	5 cut(s)	52, 106, 382, 391, 446
NlaIII	CATG	3 cut(s)	389, 446, 465
NlaIV	GGNNCC	1 cut(s)	167
PagI	TCATGA	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	77
PfeI	GAWTC	2 cut(s)	313, 341
PflFI	GACNNNGTC	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	2 cut(s)	24, 187
PpsI	GAGTC	2 cut(s)	24, 187
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	1 cut(s)	208
PsuI	RGATCY	2 cut(s)	106, 446
PsyI	GACNNNGTC	1 cut(s)	196
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	5 cut(s)	52, 106, 382, 391, 446
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	2 cut(s)	25, 187
ScrFI	CCNGG	1 cut(s)	184
SfaNI	GCATC	1 cut(s)	280
SinI	GGWCC	1 cut(s)	208
SmlI	CTYRAG	2 cut(s)	98, 203
SmoI	CTYRAG	2 cut(s)	98, 203
Sse9I	AATT	2 cut(s)	7, 355
StyD4I	CCNGG	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	125, 408
TasI	AATT	2 cut(s)	7, 355
TfiI	GAWTC	2 cut(s)	313, 341
TscAI	CASTG	1 cut(s)	221
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	3 cut(s)	101, 393, 441
TspRI	CASTG	1 cut(s)	221
Tth111I	GACNNNGTC	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	1 cut(s)	7
XmiI	GTMKAC	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.