Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0015395

Physical Location & Seq

Genomic Coordinates Forward (+)

19204190 .. 19204699

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g18170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGATTTTTTCCACACCTCAAACCACAAAAACCAATTCAAACACAGCAAAAAGAGGCTAACCCAAGACCAAGTGAAGCTCCTAGAGATAAGCTTTGCCTCCAACAACAAGCTCGAACCAGAGCGCAAGCTCCTGCTGGCCAAGCAGCTTGCAATCCCACCGAGACAGGTTGCGATTTGGTACCAGAACAAGCGCGCTCGGTGGAAGACACAAAGCCTCGAGTTTGACTACAGTGCTATCCAAGCGAAGTTGGAGAGTACCCTAGCTGAAAAGATGAGGCTTGAGAAAGATGTTGAGAGACTTAGAGGCGAGCTTAAGAAGGCTCATGAAATTGCTTTGGCCTTGAACCAACAATCACAAGTGTTTCCTGATAATCCTGTGATTTGTTCAGTATTTGATTCTTCTAACTGTAGTGATGAGGGTGTTGGGAGTTCTAGCTTGCAGCCGCATGAGGATGATGAGGTTAAGCAACTTGAGGAGCTCTATGCTTCTTTGATTGGCATGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

170

Amino Acids

19.48

Weight (kDa)

6.97

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	15 - 69	1.8e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0015395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53980
fragaria_vesca	FvH4_3g19270
malus_domestica	MD03G1235200.v1.1 MD11G1255700.v1.1
pyrus_communis	pycom03g18170 pycom11g22600
rosa_chinensis	RchiOBHm_Chr5g0032341
rosa_laevigata	RLG00000033388
rosa_multiflora	Rmu_sc0002290.1_g000010
rosa_roxburghii	Rroxscaffold_1G00048080
rosa_rugosa	Rorug05G0131400
rosa_samantha	Rh5AG224500 Rh5BG225400 Rh5CG251000 Rh5DG230100
rosa_wichuraiana	Rw5G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	180
AccB1I	GGYRCC	1 cut(s)	180
AccII	CGCG	1 cut(s)	195
AciI	CCGC	1 cut(s)	446
AcoI	YGGCCR	1 cut(s)	138
AfaI	GTAC	2 cut(s)	182, 259
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	40, 346
AluBI	AGCT	9 cut(s)	79, 93, 112, 130, 148, 266, 313, 438, 481
AluI	AGCT	9 cut(s)	79, 93, 112, 130, 148, 266, 313, 438, 481
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	2 cut(s)	157, 292
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	2 cut(s)	138, 339
ApeKI	GCWGC	2 cut(s)	145, 442
Asp718I	GGTACC	1 cut(s)	180
AspLEI	GCGC	3 cut(s)	126, 195, 197
AvaI	CYCGRG	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	2 cut(s)	157, 454
BcoDI	GTCTC	2 cut(s)	157, 292
BfaI	CTAG	3 cut(s)	83, 263, 435
BfmI	CTRYAG	2 cut(s)	229, 409
BfrI	CTTAAG	1 cut(s)	314
BisI	GCNGC	3 cut(s)	146, 443, 446
BlsI	GCNGC	3 cut(s)	147, 444, 447
BmeT110I	CYCGRG	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	212
BpuEI	CTTGAG	2 cut(s)	302, 494
BseGI	GGATG	1 cut(s)	460
BsePI	GCGCGC	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	2 cut(s)	157, 454
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	140, 341
BshNI	GGYRCC	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	483
BsiHKCI	CYCGRG	1 cut(s)	218
BsmAI	GTCTC	2 cut(s)	157, 292
BsnI	GGCC	2 cut(s)	140, 341
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	483
BspACI	CCGC	1 cut(s)	446
BspANI	GGCC	2 cut(s)	140, 341
BspFNI	CGCG	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	180
BspTI	CTTAAG	1 cut(s)	314
BssHII	GCGCGC	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	233, 410
BstAFI	CTTAAG	1 cut(s)	314
BstC8I	GCNNGC	7 cut(s)	128, 138, 150, 195, 311, 440, 503
BstDEI	CTNAG	1 cut(s)	302
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	195
BstHHI	GCGC	3 cut(s)	126, 195, 197
BstMAI	GTCTC	2 cut(s)	157, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 242
BstNSI	RCATGY	1 cut(s)	505
BstSFI	CTRYAG	2 cut(s)	229, 409
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	157, 454
BstV2I	GAAGAC	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	140, 341
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	7 cut(s)	128, 138, 150, 195, 311, 440, 503
CciI	TCATGA	1 cut(s)	325
CfoI	GCGC	3 cut(s)	126, 195, 197
Csp6I	GTAC	2 cut(s)	181, 258
CviAII	CATG	3 cut(s)	326, 449, 502
CviQI	GTAC	2 cut(s)	181, 258
DdeI	CTNAG	1 cut(s)	302
EaeI	YGGCCR	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	483
Eco53kI	GAGCTC	1 cut(s)	481
Eco88I	CYCGRG	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	483
FaeI	CATG	3 cut(s)	329, 452, 505
FaiI	YATR	4 cut(s)	327, 450, 486, 503
FatI	CATG	3 cut(s)	325, 448, 501
Fnu4HI	GCNGC	3 cut(s)	146, 443, 446
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	3 cut(s)	146, 443, 446
FspBI	CTAG	3 cut(s)	83, 263, 435
GlaI	GCGC	3 cut(s)	125, 194, 196
GluI	GCNGC	3 cut(s)	146, 443, 446
HaeIII	GGCC	2 cut(s)	140, 341
HhaI	GCGC	3 cut(s)	126, 195, 197
Hin1II	CATG	3 cut(s)	329, 452, 505
Hin6I	GCGC	3 cut(s)	124, 193, 195
HinP1I	GCGC	3 cut(s)	124, 193, 195
HindIII	AAGCTT	1 cut(s)	91
HinfI	GANTC	1 cut(s)	398
Hpy188III	TCNNGA	2 cut(s)	326, 368
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	2 cut(s)	233, 410
HpyCH4V	TGCA	3 cut(s)	152, 442, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 242
HpyF3I	CTNAG	1 cut(s)	302
Hsp92II	CATG	3 cut(s)	329, 452, 505
HspAI	GCGC	3 cut(s)	124, 193, 195
KpnI	GGTACC	1 cut(s)	184
LmnI	GCTCC	3 cut(s)	84, 135, 478
LpnPI	CCDG	7 cut(s)	122, 132, 146, 152, 197, 381, 390
Lsp1109I	GCAGC	2 cut(s)	157, 454
MaeI	CTAG	3 cut(s)	83, 263, 435
MboII	GAAGA	2 cut(s)	217, 393
MhlI	GDGCHC	1 cut(s)	483
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	2 cut(s)	35, 330
MluNI	TGGCCA	1 cut(s)	140
MmeI	TCCRAC	2 cut(s)	126, 231
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	2 cut(s)	315, 465
MslI	CAYNNNNRTG	1 cut(s)	453
Msp20I	TGGCCA	1 cut(s)	140
MspCI	CTTAAG	1 cut(s)	314
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	142, 242
NlaIII	CATG	3 cut(s)	329, 452, 505
NlaIV	GGNNCC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	505
PaeI	GCATGC	1 cut(s)	505
PaeR7I	CTCGAG	1 cut(s)	218
PagI	TCATGA	1 cut(s)	325
PauI	GCGCGC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	398
PkrI	GCNGC	3 cut(s)	147, 444, 447
Psp124BI	GAGCTC	1 cut(s)	483
PspN4I	GGNNCC	1 cut(s)	182
PspXI	VCTCGAGB	1 cut(s)	218
PteI	GCGCGC	1 cut(s)	193
RsaI	GTAC	2 cut(s)	182, 259
RsaNI	GTAC	2 cut(s)	181, 258
RseI	CAYNNNNRTG	1 cut(s)	453
SacI	GAGCTC	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	315, 465
SatI	GCNGC	3 cut(s)	146, 443, 446
SduI	GDGCHC	1 cut(s)	483
SfcI	CTRYAG	2 cut(s)	229, 409
Sfr274I	CTCGAG	1 cut(s)	218
SlaI	CTCGAG	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	4 cut(s)	218, 281, 314, 473
SmoI	CTYRAG	4 cut(s)	218, 281, 314, 473
SphI	GCATGC	1 cut(s)	505
Sse9I	AATT	2 cut(s)	35, 330
SsiI	CCGC	1 cut(s)	446
SspMI	CTAG	3 cut(s)	83, 263, 435
SstI	GAGCTC	1 cut(s)	483
TaaI	ACNGT	2 cut(s)	233, 410
TaqI	TCGA	2 cut(s)	114, 219
TasI	AATT	2 cut(s)	35, 330
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	2 cut(s)	315, 465
Tru9I	TTAA	2 cut(s)	315, 465
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	2 cut(s)	145, 442
TspDTI	ATGAA	1 cut(s)	342
TspRI	CASTG	1 cut(s)	238
Vha464I	CTTAAG	1 cut(s)	314
XceI	RCATGY	1 cut(s)	505
XhoI	CTCGAG	1 cut(s)	218
XspI	CTAG	3 cut(s)	83, 263, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.