pycom11g22600

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0015395
Physical Location & Seq
Forward (+)
25620638 .. 25621156
519 bp
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UTR
Exon/CDS
Intron
pycom11g22600.1

Sequence Viewer

Length: 519 bp
ATGGATTTTTTCCAGACCTCGAACCACAAAAACCAATTCCAACACAACAAAAAAAGGCTAACTCAAGACCAAGTGAAGCTCCTAGAGCGAAGCTTTGCCTTCAACAAGAAGCTTGAACCAGAGCGCAAGCTTCTGCTGGCCAAGCAGCTCGCAATCCCACCGAGACAGGTTGCAATTTGGTACCAGAACAAGCGCGCGCGGTGGAAGACGCAGAGCCTCGAGCTCAACTACAATGCAATCCAAGCGAAGCTGGAGAGTGCCCTAGCTGAAAAGAGGAGGCTTGAGAAAGATGTTGAGAGGCTTAGAGGCGAGCTTAAGAGGGCTCATGAAGTTGTGTTGGCCTTGAACCAACAAGTACAAGTGTTTCCACCTAATCCTGTAATTTGTTCAGTGTTTGATTCTTCTAATTGTAGTGATGAGGGTGGTGTTGGAAGTTCTAGCATGCAGGTGCAGCCTCATGGGGATCATGAGGTTAAGCAACTTGAGGAGCTTTATGCTTGTTTGATTGGCATGCAGTGA

Protein Analysis

173

Amino Acids

19.91

Weight (kDa)

9.3

Isoelectric Point (pI)

53.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 16 - 69 1.4e-14 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53980
fragaria_vesca FvH4_3g19270
malus_domestica MD03G1235200.v1.1 MD11G1255700.v1.1
pyrus_communis pycom03g18170 pycom11g22600
rosa_chinensis RchiOBHm_Chr5g0032341
rosa_laevigata RLG00000033388
rosa_multiflora Rmu_sc0002290.1_g000010
rosa_roxburghii Rroxscaffold_1G00048080
rosa_rugosa Rorug05G0131400
rosa_samantha Rh5AG224500 Rh5BG225400 Rh5CG251000 Rh5DG230100
rosa_wichuraiana Rw5G020510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 436
Acc36I ACCTGC 1 cut(s) 436
Acc65I GGTACC 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 180
AccII CGCG 3 cut(s) 195, 197, 199
AciI CCGC 1 cut(s) 199
AclWI GGATC 1 cut(s) 471
AcoI YGGCCR 1 cut(s) 138
AfaI GTAC 2 cut(s) 182, 357
AflII CTTAAG 1 cut(s) 314
AgsI TTSAA 3 cut(s) 103, 116, 346
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 1 cut(s) 471
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 2 cut(s) 138, 339
ApeKI GCWGC 2 cut(s) 145, 451
Asp718I GGTACC 1 cut(s) 180
AspLEI GCGC 4 cut(s) 126, 195, 197, 199
AvaI CYCGRG 1 cut(s) 218
BaeGI GKGCMC 1 cut(s) 262
BalI TGGCCA 1 cut(s) 140
BanI GGYRCC 1 cut(s) 180
BanII GRGCYC 2 cut(s) 225, 325
BbsI GAAGAC 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 2 cut(s) 157, 463
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 3 cut(s) 83, 263, 438
BfrI CTTAAG 1 cut(s) 314
BfuAI ACCTGC 1 cut(s) 436
BisI GCNGC 2 cut(s) 146, 452
BlsI GCNGC 2 cut(s) 147, 453
BmeT110I CYCGRG 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 212
BpmI CTGGAG 1 cut(s) 272
BpuEI CTTGAG 3 cut(s) 48, 302, 503
BsePI GCGCGC 2 cut(s) 193, 195
BseRI GAGGAG 2 cut(s) 289, 500
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 2 cut(s) 157, 463
BsgI GTGCAG 1 cut(s) 470
Bsh1236I CGCG 3 cut(s) 195, 197, 199
BshFI GGCC 2 cut(s) 140, 341
BshNI GGYRCC 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 225
BsiHKCI CYCGRG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 157
BsnI GGCC 2 cut(s) 140, 341
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 3 cut(s) 225, 262, 325
Bsp143I GATC 1 cut(s) 463
BspACI CCGC 1 cut(s) 199
BspANI GGCC 2 cut(s) 140, 341
BspFNI CGCG 3 cut(s) 195, 197, 199
BspHI TCATGA 2 cut(s) 325, 466
BspLI GGNNCC 1 cut(s) 182
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 1 cut(s) 471
BspT107I GGYRCC 1 cut(s) 180
BspTI CTTAAG 1 cut(s) 314
BssHII GCGCGC 2 cut(s) 193, 195
BssMI GATC 1 cut(s) 463
BstAFI CTTAAG 1 cut(s) 314
BstC8I GCNNGC 8 cut(s) 128, 138, 150, 195, 197, 311, 443, 512
BstDEI CTNAG 1 cut(s) 302
BstFNI CGCG 3 cut(s) 195, 197, 199
BstHHI GCGC 4 cut(s) 126, 195, 197, 199
BstKTI GATC 1 cut(s) 466
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 1 cut(s) 463
BstMWI GCNNNNNNNGC 4 cut(s) 85, 142, 242, 451
BstNSI RCATGY 2 cut(s) 445, 514
BstSLI GKGCMC 1 cut(s) 262
BstUI CGCG 3 cut(s) 195, 197, 199
BstV1I GCAGC 2 cut(s) 157, 463
BstV2I GAAGAC 1 cut(s) 212
BsuRI GGCC 2 cut(s) 140, 341
BtsIMutI CAGTG 1 cut(s) 396
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 8 cut(s) 128, 138, 150, 195, 197, 311, 443, 512
CciI TCATGA 2 cut(s) 325, 466
CfoI GCGC 4 cut(s) 126, 195, 197, 199
CseI GACGC 1 cut(s) 217
Csp6I GTAC 2 cut(s) 181, 356
CviAII CATG 5 cut(s) 326, 442, 458, 467, 511
CviQI GTAC 2 cut(s) 181, 356
DdeI CTNAG 1 cut(s) 302
DpnI GATC 1 cut(s) 465
DpnII GATC 1 cut(s) 463
EaeI YGGCCR 1 cut(s) 138
Ecl136II GAGCTC 1 cut(s) 223
Eco24I GRGCYC 2 cut(s) 225, 325
Eco53kI GAGCTC 1 cut(s) 223
Eco88I CYCGRG 1 cut(s) 218
EcoICRI GAGCTC 1 cut(s) 223
EcoT38I GRGCYC 2 cut(s) 225, 325
FaeI CATG 5 cut(s) 329, 445, 461, 470, 514
FaiI YATR 6 cut(s) 327, 443, 459, 468, 495, 512
FatI CATG 5 cut(s) 325, 441, 457, 466, 510
Fnu4HI GCNGC 2 cut(s) 146, 452
FriOI GRGCYC 2 cut(s) 225, 325
Fsp4HI GCNGC 2 cut(s) 146, 452
FspBI CTAG 3 cut(s) 83, 263, 438
GlaI GCGC 4 cut(s) 125, 194, 196, 198
GluI GCNGC 2 cut(s) 146, 452
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 2 cut(s) 140, 341
HgaI GACGC 1 cut(s) 217
HhaI GCGC 4 cut(s) 126, 195, 197, 199
Hin1II CATG 5 cut(s) 329, 445, 461, 470, 514
Hin6I GCGC 4 cut(s) 124, 193, 195, 197
HinP1I GCGC 4 cut(s) 124, 193, 195, 197
HindIII AAGCTT 3 cut(s) 91, 110, 128
HinfI GANTC 1 cut(s) 398
Hpy188III TCNNGA 4 cut(s) 13, 65, 326, 467
HpyAV CCTTC 1 cut(s) 109
HpyCH4V TGCA 5 cut(s) 173, 236, 445, 451, 514
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 142, 242, 451
HpyF3I CTNAG 1 cut(s) 302
Hsp92II CATG 5 cut(s) 329, 445, 461, 470, 514
HspAI GCGC 4 cut(s) 124, 193, 195, 197
KpnI GGTACC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 463
LmnI GCTCC 2 cut(s) 84, 487
LpnPI CCDG 8 cut(s) 26, 122, 132, 152, 197, 236, 390, 431
Lsp1109I GCAGC 2 cut(s) 157, 463
MaeI CTAG 3 cut(s) 83, 263, 438
MalI GATC 1 cut(s) 465
MauBI CGCGCGCG 1 cut(s) 195
MboI GATC 1 cut(s) 463
MboII GAAGA 2 cut(s) 217, 393
MhlI GDGCHC 3 cut(s) 225, 262, 325
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 4 cut(s) 35, 174, 381, 406
MluNI TGGCCA 1 cut(s) 140
MmeI TCCRAC 2 cut(s) 64, 409
Mox20I TGGCCA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 140
MseI TTAA 2 cut(s) 315, 474
MslI CAYNNNNRTG 1 cut(s) 446
Msp20I TGGCCA 1 cut(s) 140
MspCI CTTAAG 1 cut(s) 314
MvnI CGCG 3 cut(s) 195, 197, 199
MwoI GCNNNNNNNGC 4 cut(s) 85, 142, 242, 451
NdeII GATC 1 cut(s) 463
NlaIII CATG 5 cut(s) 329, 445, 461, 470, 514
NlaIV GGNNCC 1 cut(s) 182
NspI RCATGY 2 cut(s) 445, 514
PaeI GCATGC 2 cut(s) 445, 514
PaeR7I CTCGAG 1 cut(s) 218
PagI TCATGA 2 cut(s) 325, 466
PaqCI CACCTGC 1 cut(s) 436
PauI GCGCGC 2 cut(s) 193, 195
PfeI GAWTC 1 cut(s) 398
PkrI GCNGC 2 cut(s) 147, 453
Psp124BI GAGCTC 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 182
PspXI VCTCGAGB 1 cut(s) 218
PteI GCGCGC 2 cut(s) 193, 195
RsaI GTAC 2 cut(s) 182, 357
RsaNI GTAC 2 cut(s) 181, 356
RseI CAYNNNNRTG 1 cut(s) 446
SacI GAGCTC 1 cut(s) 225
SaqAI TTAA 2 cut(s) 315, 474
SatI GCNGC 2 cut(s) 146, 452
Sau3AI GATC 1 cut(s) 463
SduI GDGCHC 3 cut(s) 225, 262, 325
Sfr274I CTCGAG 1 cut(s) 218
SlaI CTCGAG 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 446
SmlI CTYRAG 5 cut(s) 63, 218, 281, 314, 482
SmoI CTYRAG 5 cut(s) 63, 218, 281, 314, 482
SphI GCATGC 2 cut(s) 445, 514
Sse9I AATT 4 cut(s) 35, 174, 381, 406
SsiI CCGC 1 cut(s) 199
SspMI CTAG 3 cut(s) 83, 263, 438
SstI GAGCTC 1 cut(s) 225
TaqI TCGA 2 cut(s) 20, 219
TasI AATT 4 cut(s) 35, 174, 381, 406
TatI WGTACW 1 cut(s) 355
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 2 cut(s) 315, 474
Tru9I TTAA 2 cut(s) 315, 474
TscAI CASTG 1 cut(s) 396
TseI GCWGC 2 cut(s) 145, 451
TspDTI ATGAA 1 cut(s) 342
TspRI CASTG 1 cut(s) 396
Vha464I CTTAAG 1 cut(s) 314
XceI RCATGY 2 cut(s) 445, 514
XhoI CTCGAG 1 cut(s) 218
XspI CTAG 3 cut(s) 83, 263, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.