Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0015395

Physical Location & Seq

Genomic Coordinates Forward (+)

36861229 .. 36861741

Gene Structure 513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1255700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGATTTTTTCCAGACCTCAAACCACAAAAACCAATTCCAACACAACAAAAAGAGGCTAACCCAAGACCAAGTGAAGCTCCTAGAGCGAAGCTTTGCCTCCAACAAGAAGCTTGAACCAGAGCGCAAGCTTCTGCTGGCCAAGCAGCTCGCAATCCCACCGAGACAGGTTGCGATTTGGTACCAGAACAAGCGCGCGCGGTGGAAGACGCAGAGCCTTGAGCTCAACTACAATGCAATCCAAGCGAAGCTGGAAAGTGCCCTAGCTGAAAAGAGGAGGCTTGAGAAAGATGTTGAGAGGCTTAGAGGCGAGCTTAAGAGGGCTCATGAAGTTGTGTTGGCCTTGAACCAACAAGCACAAGTGTTTCCTGCTAATCCTGTAATTTGTTCAGTGTTTGATTCTTCTAATTGTAGTGATGAGGTTGGTGTTGGAAGTTCTAGCATGCAGCCGCATGGGGATCATGCGGTTAAGCAACTTGAGGAGCTCTATGCTTGTTTGATTGGCATGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

171

Amino Acids

19.55

Weight (kDa)

9.43

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	16 - 69	5e-15	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53980
fragaria_vesca	FvH4_3g19270
malus_domestica	MD03G1235200.v1.1 MD11G1255700.v1.1
pyrus_communis	pycom03g18170 pycom11g22600
rosa_chinensis	RchiOBHm_Chr5g0032341
rosa_laevigata	RLG00000033388
rosa_multiflora	Rmu_sc0002290.1_g000010
rosa_roxburghii	Rroxscaffold_1G00048080
rosa_rugosa	Rorug05G0131400
rosa_samantha	Rh5AG224500 Rh5BG225400 Rh5CG251000 Rh5DG230100
rosa_wichuraiana	Rw5G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	180
AccB1I	GGYRCC	1 cut(s)	180
AccII	CGCG	3 cut(s)	195, 197, 199
AciI	CCGC	3 cut(s)	199, 449, 464
AclWI	GGATC	1 cut(s)	465
AcoI	YGGCCR	1 cut(s)	138
AfaI	GTAC	1 cut(s)	182
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	116, 346
Alw21I	GWGCWC	2 cut(s)	225, 486
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	465
AoxI	GGCC	2 cut(s)	138, 339
ApeKI	GCWGC	2 cut(s)	145, 445
Asp718I	GGTACC	1 cut(s)	180
AspLEI	GCGC	4 cut(s)	126, 195, 197, 199
BaeGI	GKGCMC	1 cut(s)	262
BalI	TGGCCA	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	3 cut(s)	225, 325, 486
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	2 cut(s)	225, 486
BbvI	GCAGC	2 cut(s)	157, 457
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	3 cut(s)	83, 263, 438
BfrI	CTTAAG	1 cut(s)	314
BisI	GCNGC	3 cut(s)	146, 446, 449
BlsI	GCNGC	3 cut(s)	147, 447, 450
BmiI	GGNNCC	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	212
BpuEI	CTTGAG	3 cut(s)	239, 302, 497
BsePI	GCGCGC	2 cut(s)	193, 195
BseRI	GAGGAG	2 cut(s)	289, 494
BseSI	GKGCMC	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	157, 457
Bsh1236I	CGCG	3 cut(s)	195, 197, 199
BshFI	GGCC	2 cut(s)	140, 341
BshNI	GGYRCC	1 cut(s)	180
BsiHKAI	GWGCWC	2 cut(s)	225, 486
BsmAI	GTCTC	1 cut(s)	157
BsnI	GGCC	2 cut(s)	140, 341
Bsp1286I	GDGCHC	4 cut(s)	225, 262, 325, 486
Bsp143I	GATC	1 cut(s)	457
BspACI	CCGC	3 cut(s)	199, 449, 464
BspANI	GGCC	2 cut(s)	140, 341
BspFNI	CGCG	3 cut(s)	195, 197, 199
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	465
BspT107I	GGYRCC	1 cut(s)	180
BspTI	CTTAAG	1 cut(s)	314
BssHII	GCGCGC	2 cut(s)	193, 195
BssMI	GATC	1 cut(s)	457
BstAFI	CTTAAG	1 cut(s)	314
BstC8I	GCNNGC	8 cut(s)	128, 138, 150, 195, 197, 311, 443, 506
BstDEI	CTNAG	1 cut(s)	302
BstFNI	CGCG	3 cut(s)	195, 197, 199
BstHHI	GCGC	4 cut(s)	126, 195, 197, 199
BstKTI	GATC	1 cut(s)	460
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 142, 242
BstNSI	RCATGY	2 cut(s)	445, 508
BstSLI	GKGCMC	1 cut(s)	262
BstUI	CGCG	3 cut(s)	195, 197, 199
BstV1I	GCAGC	2 cut(s)	157, 457
BstV2I	GAAGAC	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	140, 341
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	8 cut(s)	128, 138, 150, 195, 197, 311, 443, 506
CciI	TCATGA	1 cut(s)	325
CfoI	GCGC	4 cut(s)	126, 195, 197, 199
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	5 cut(s)	326, 442, 452, 461, 505
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	302
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	138
Ecl136II	GAGCTC	2 cut(s)	223, 484
Eco24I	GRGCYC	3 cut(s)	225, 325, 486
Eco53kI	GAGCTC	2 cut(s)	223, 484
EcoICRI	GAGCTC	2 cut(s)	223, 484
EcoT38I	GRGCYC	3 cut(s)	225, 325, 486
FaeI	CATG	5 cut(s)	329, 445, 455, 464, 508
FaiI	YATR	6 cut(s)	327, 443, 453, 462, 489, 506
FatI	CATG	5 cut(s)	325, 441, 451, 460, 504
Fnu4HI	GCNGC	3 cut(s)	146, 446, 449
FriOI	GRGCYC	3 cut(s)	225, 325, 486
Fsp4HI	GCNGC	3 cut(s)	146, 446, 449
FspBI	CTAG	3 cut(s)	83, 263, 438
GlaI	GCGC	4 cut(s)	125, 194, 196, 198
GluI	GCNGC	3 cut(s)	146, 446, 449
HaeIII	GGCC	2 cut(s)	140, 341
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	4 cut(s)	126, 195, 197, 199
Hin1II	CATG	5 cut(s)	329, 445, 455, 464, 508
Hin6I	GCGC	4 cut(s)	124, 193, 195, 197
HinP1I	GCGC	4 cut(s)	124, 193, 195, 197
HindIII	AAGCTT	3 cut(s)	91, 110, 128
HinfI	GANTC	1 cut(s)	398
Hpy188III	TCNNGA	2 cut(s)	13, 326
HpyCH4V	TGCA	3 cut(s)	236, 445, 508
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 142, 242
HpyF3I	CTNAG	1 cut(s)	302
Hsp92II	CATG	5 cut(s)	329, 445, 455, 464, 508
HspAI	GCGC	4 cut(s)	124, 193, 195, 197
KpnI	GGTACC	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	457
LmnI	GCTCC	2 cut(s)	84, 481
LpnPI	CCDG	8 cut(s)	26, 122, 132, 152, 197, 236, 381, 390
Lsp1109I	GCAGC	2 cut(s)	157, 457
MaeI	CTAG	3 cut(s)	83, 263, 438
MalI	GATC	1 cut(s)	459
MauBI	CGCGCGCG	1 cut(s)	195
MboI	GATC	1 cut(s)	457
MboII	GAAGA	2 cut(s)	217, 393
MhlI	GDGCHC	4 cut(s)	225, 262, 325, 486
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	3 cut(s)	35, 381, 406
MluNI	TGGCCA	1 cut(s)	140
MmeI	TCCRAC	3 cut(s)	64, 126, 409
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	2 cut(s)	315, 468
Msp20I	TGGCCA	1 cut(s)	140
MspCI	CTTAAG	1 cut(s)	314
MvnI	CGCG	3 cut(s)	195, 197, 199
MwoI	GCNNNNNNNGC	3 cut(s)	85, 142, 242
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	5 cut(s)	329, 445, 455, 464, 508
NlaIV	GGNNCC	1 cut(s)	182
NspI	RCATGY	2 cut(s)	445, 508
PaeI	GCATGC	2 cut(s)	445, 508
PagI	TCATGA	1 cut(s)	325
PauI	GCGCGC	2 cut(s)	193, 195
PfeI	GAWTC	1 cut(s)	398
PkrI	GCNGC	3 cut(s)	147, 447, 450
Psp124BI	GAGCTC	2 cut(s)	225, 486
PspN4I	GGNNCC	1 cut(s)	182
PteI	GCGCGC	2 cut(s)	193, 195
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SacI	GAGCTC	2 cut(s)	225, 486
SaqAI	TTAA	2 cut(s)	315, 468
SatI	GCNGC	3 cut(s)	146, 446, 449
Sau3AI	GATC	1 cut(s)	457
SduI	GDGCHC	4 cut(s)	225, 262, 325, 486
SmlI	CTYRAG	4 cut(s)	218, 281, 314, 476
SmoI	CTYRAG	4 cut(s)	218, 281, 314, 476
SphI	GCATGC	2 cut(s)	445, 508
Sse9I	AATT	3 cut(s)	35, 381, 406
SsiI	CCGC	3 cut(s)	199, 449, 464
SspMI	CTAG	3 cut(s)	83, 263, 438
SstI	GAGCTC	2 cut(s)	225, 486
TasI	AATT	3 cut(s)	35, 381, 406
TauI	GCSGC	1 cut(s)	451
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	2 cut(s)	315, 468
Tru9I	TTAA	2 cut(s)	315, 468
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	2 cut(s)	145, 445
TspDTI	ATGAA	1 cut(s)	342
TspRI	CASTG	1 cut(s)	396
Vha464I	CTTAAG	1 cut(s)	314
XceI	RCATGY	2 cut(s)	445, 508
XspI	CTAG	3 cut(s)	83, 263, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.