Rh5CG251000

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0015395
Physical Location & Seq
Reverse (-)
26413612 .. 26414913
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG251000.1

Sequence Viewer

Length: 708 bp
ATGCAGGTAGATCAAGTTGAAGTAGGGCCATTCCCACGTGAAACCCACAGGGCGGGGCAAGAACTCTGTCTCTCTCTCAAGTTCAACTTCAAACCCTTACAAGAAAGCATAAAACCCACCTGCTTGTCGAAACATGCCTCACCCTCATCACTAATCTTCATCTCTCAAAATCTCCAAGCTCCGGAAACTAACATGGATTTTTTCCAAACCCCAAGCAACAAGAACCAATTCCATCACAAGAAAAAGAGGCTAACCCAAGACCAAGTGAAGCTTCTGGAGAGAAGCTTCAGCTCCGACAACAAGCTCGAGCCAGACCGCAAGCTCCTGCTGGCCAAACAGCTCGGAATCCCGGCCAGACAGGTTGCCATTTGGTACCAAAACAAGCGAGCGCGGTGGAAGACGCAGAGCCTCGAGCTCGGCTACAATGCGATTCAAGTGCAGCTGGAGACTGCATTAGCGGAAAAGAGGAAACTGGAGAAAGATGTTGAGAGGCTTAAGGGAGAGTTAAACAGGGCTCATGAACTGTTGTTGGATTTGAATAACCAAAGACAAGTAGGTGGTGATAATCATCCTGTGGTTTGCTCAGTGTTTTCAGCTTCTTGTGATCAAGATGGTGCTGCTAGCTCTAGTTTGCAGCTTGGGGATCATGTGGTTAATCATGAGGTTAAGGAGTTTGAGGAGCTCTATGCTTGTTTGATTGGCATGTAG

Protein Analysis

235

Amino Acids

26.76

Weight (kDa)

8.23

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 80 - 133 4.3e-15 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53980
fragaria_vesca FvH4_3g19270
malus_domestica MD03G1235200.v1.1 MD11G1255700.v1.1
pyrus_communis pycom03g18170 pycom11g22600
rosa_chinensis RchiOBHm_Chr5g0032341
rosa_laevigata RLG00000033388
rosa_multiflora Rmu_sc0002290.1_g000010
rosa_roxburghii Rroxscaffold_1G00048080
rosa_rugosa Rorug05G0131400
rosa_samantha Rh5AG224500 Rh5BG225400 Rh5CG251000 Rh5DG230100
rosa_wichuraiana Rw5G020510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 128
Acc36I ACCTGC 1 cut(s) 128
Acc65I GGTACC 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 372
AccII CGCG 1 cut(s) 391
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 4 cut(s) 53, 316, 391, 458
AclWI GGATC 1 cut(s) 651
AcoI YGGCCR 2 cut(s) 330, 351
AcuI CTGAAG 1 cut(s) 271
AcvI CACGTG 1 cut(s) 38
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 2 cut(s) 52, 181
AflII CTTAAG 1 cut(s) 494
AgsI TTSAA 5 cut(s) 20, 85, 91, 434, 538
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
Alw21I GWGCWC 2 cut(s) 417, 684
Alw26I GTCTC 2 cut(s) 74, 440
AlwI GGATC 1 cut(s) 651
Ama87I CYCGRG 2 cut(s) 305, 410
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 3 cut(s) 26, 330, 351
ApeKI GCWGC 3 cut(s) 439, 617, 634
Asp700I GAANNNNTTC 1 cut(s) 227
Asp718I GGTACC 1 cut(s) 372
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 1 cut(s) 26
AsuC2I CCSGG 1 cut(s) 350
AsuHPI GGTGA 2 cut(s) 132, 572
AsuNHI GCTAGC 1 cut(s) 620
AvaI CYCGRG 2 cut(s) 305, 410
BalI TGGCCA 1 cut(s) 332
BanI GGYRCC 1 cut(s) 372
BanII GRGCYC 3 cut(s) 417, 517, 684
BbrPI CACGTG 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 404
Bbv12I GWGCWC 2 cut(s) 417, 684
BbvI GCAGC 3 cut(s) 451, 604, 646
BccI CCATC 2 cut(s) 240, 605
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BclI TGATCA 1 cut(s) 604
BcnI CCSGG 1 cut(s) 350
BcoDI GTCTC 2 cut(s) 74, 440
BfaI CTAG 2 cut(s) 621, 627
BfrI CTTAAG 1 cut(s) 494
BfuAI ACCTGC 1 cut(s) 128
BisI GCNGC 3 cut(s) 440, 618, 635
BlsI GCNGC 3 cut(s) 441, 619, 636
Bme1390I CCNGG 1 cut(s) 350
BmeT110I CYCGRG 2 cut(s) 305, 410
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 374
BmrFI CCNGG 1 cut(s) 350
BmtI GCTAGC 1 cut(s) 624
BpiI GAAGAC 1 cut(s) 404
BpmI CTGGAG 3 cut(s) 296, 464, 494
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 350
BsaAI YACGTR 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 567
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 181
Bse1I ACTGG 1 cut(s) 477
Bse8I GATNNNNATC 1 cut(s) 567
BseAI TCCGGA 1 cut(s) 181
BseGI GGATG 1 cut(s) 568
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 2 cut(s) 52, 181
BseMII CTCAG 1 cut(s) 597
BseNI ACTGG 1 cut(s) 477
BseRI GAGGAG 1 cut(s) 692
BseXI GCAGC 3 cut(s) 451, 604, 646
BsgI GTGCAG 1 cut(s) 458
Bsh1236I CGCG 1 cut(s) 391
BshFI GGCC 3 cut(s) 28, 332, 353
BshNI GGYRCC 1 cut(s) 372
BsiHKAI GWGCWC 2 cut(s) 417, 684
BsiHKCI CYCGRG 2 cut(s) 305, 410
BsiSI CCGG 2 cut(s) 182, 350
BslI CCNNNNNNNGG 2 cut(s) 52, 181
BsmAI GTCTC 2 cut(s) 74, 440
BsnI GGCC 3 cut(s) 28, 332, 353
BsoBI CYCGRG 2 cut(s) 305, 410
Bsp1286I GDGCHC 3 cut(s) 417, 517, 684
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 3 cut(s) 10, 604, 643
BspACI CCGC 4 cut(s) 53, 316, 391, 458
BspANI GGCC 3 cut(s) 28, 332, 353
BspCNI CTCAG 1 cut(s) 596
BspEI TCCGGA 1 cut(s) 181
BspFNI CGCG 1 cut(s) 391
BspHI TCATGA 2 cut(s) 517, 658
BspLI GGNNCC 1 cut(s) 374
BspMI ACCTGC 1 cut(s) 128
BspOI GCTAGC 1 cut(s) 624
BspPI GGATC 1 cut(s) 651
BspT107I GGYRCC 1 cut(s) 372
BspTI CTTAAG 1 cut(s) 494
BsrI ACTGG 1 cut(s) 477
BssMI GATC 3 cut(s) 10, 604, 643
Bst4CI ACNGT 1 cut(s) 525
BstAFI CTTAAG 1 cut(s) 494
BstBAI YACGTR 1 cut(s) 38
BstC8I GCNNGC 4 cut(s) 320, 330, 387, 622
BstDEI CTNAG 1 cut(s) 583
BstF5I GGATG 1 cut(s) 568
BstFNI CGCG 1 cut(s) 391
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 3 cut(s) 13, 607, 646
BstMAI GTCTC 2 cut(s) 74, 440
BstMBI GATC 3 cut(s) 10, 604, 643
BstNSI RCATGY 2 cut(s) 137, 706
BstSCI CCNGG 1 cut(s) 348
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 3 cut(s) 451, 604, 646
BstV2I GAAGAC 1 cut(s) 404
BsuRI GGCC 3 cut(s) 28, 332, 353
BtsCI GGATG 1 cut(s) 568
BtsIMutI CAGTG 1 cut(s) 591
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 4 cut(s) 320, 330, 387, 622
CciI TCATGA 2 cut(s) 517, 658
CfoI GCGC 1 cut(s) 391
Cfr13I GGNCC 1 cut(s) 26
CseI GACGC 1 cut(s) 409
Csp6I GTAC 1 cut(s) 373
CviAII CATG 6 cut(s) 134, 193, 518, 647, 659, 703
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 1 cut(s) 583
DpnI GATC 3 cut(s) 12, 606, 645
DpnII GATC 3 cut(s) 10, 604, 643
EaeI YGGCCR 2 cut(s) 330, 351
Ecl136II GAGCTC 2 cut(s) 415, 682
Eco24I GRGCYC 3 cut(s) 417, 517, 684
Eco53kI GAGCTC 2 cut(s) 415, 682
Eco57I CTGAAG 1 cut(s) 271
Eco72I CACGTG 1 cut(s) 38
Eco88I CYCGRG 2 cut(s) 305, 410
EcoICRI GAGCTC 2 cut(s) 415, 682
EcoT38I GRGCYC 3 cut(s) 417, 517, 684
FaeI CATG 6 cut(s) 137, 196, 521, 650, 662, 706
FaiI YATR 8 cut(s) 110, 135, 194, 519, 648, 660, 687, 704
FalI AAGNNNNNCTT 4 cut(s) 71, 103, 255, 287
FatI CATG 6 cut(s) 133, 192, 517, 646, 658, 702
FauI CCCGC 1 cut(s) 46
FbaI TGATCA 1 cut(s) 604
Fnu4HI GCNGC 3 cut(s) 440, 618, 635
FokI GGATG 1 cut(s) 555
FriOI GRGCYC 3 cut(s) 417, 517, 684
Fsp4HI GCNGC 3 cut(s) 440, 618, 635
FspBI CTAG 2 cut(s) 621, 627
GlaI GCGC 1 cut(s) 390
GluI GCNGC 3 cut(s) 440, 618, 635
GsuI CTGGAG 3 cut(s) 296, 464, 494
HaeIII GGCC 3 cut(s) 28, 332, 353
HapII CCGG 2 cut(s) 182, 350
HgaI GACGC 1 cut(s) 409
HhaI GCGC 1 cut(s) 391
Hin1II CATG 6 cut(s) 137, 196, 521, 650, 662, 706
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HindIII AAGCTT 2 cut(s) 269, 283
HinfI GANTC 2 cut(s) 345, 430
HpaII CCGG 2 cut(s) 182, 350
HphI GGTGA 2 cut(s) 132, 572
Hpy188I TCNGA 2 cut(s) 295, 344
Hpy188III TCNNGA 5 cut(s) 182, 275, 518, 608, 659
HpyCH4III ACNGT 1 cut(s) 525
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 4 cut(s) 4, 439, 452, 634
HpyF3I CTNAG 1 cut(s) 583
HpySE526I ACGT 1 cut(s) 37
Hsp92II CATG 6 cut(s) 137, 196, 521, 650, 662, 706
HspAI GCGC 1 cut(s) 389
Kpn2I TCCGGA 1 cut(s) 181
KpnI GGTACC 1 cut(s) 376
Ksp22I TGATCA 1 cut(s) 604
Kzo9I GATC 3 cut(s) 10, 604, 643
LmnI GCTCC 4 cut(s) 184, 296, 327, 679
Lsp1109I GCAGC 3 cut(s) 451, 604, 646
MaeI CTAG 2 cut(s) 621, 627
MaeII ACGT 1 cut(s) 37
MalI GATC 3 cut(s) 12, 606, 645
MboI GATC 3 cut(s) 10, 604, 643
MboII GAAGA 2 cut(s) 148, 409
MhlI GDGCHC 3 cut(s) 417, 517, 684
MlsI TGGCCA 1 cut(s) 332
MluCI AATT 1 cut(s) 227
MluNI TGGCCA 1 cut(s) 332
MmeI TCCRAC 2 cut(s) 318, 510
MnlI CCTC 8 cut(s) 148, 154, 240, 419, 459, 483, 655, 670
Mox20I TGGCCA 1 cut(s) 332
MroI TCCGGA 1 cut(s) 181
MroXI GAANNNNTTC 1 cut(s) 227
MscI TGGCCA 1 cut(s) 332
MseI TTAA 4 cut(s) 495, 506, 654, 666
Msp20I TGGCCA 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 442
MspCI CTTAAG 1 cut(s) 494
MspI CCGG 2 cut(s) 182, 350
MspR9I CCNGG 1 cut(s) 350
MvnI CGCG 1 cut(s) 391
NciI CCSGG 1 cut(s) 350
NdeII GATC 3 cut(s) 10, 604, 643
NheI GCTAGC 1 cut(s) 620
NlaIII CATG 6 cut(s) 137, 196, 521, 650, 662, 706
NlaIV GGNNCC 1 cut(s) 374
NmeAIII GCCGAG 1 cut(s) 396
NspI RCATGY 2 cut(s) 137, 706
PaeR7I CTCGAG 2 cut(s) 305, 410
PagI TCATGA 2 cut(s) 517, 658
PaqCI CACCTGC 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 2 cut(s) 345, 430
PkrI GCNGC 3 cut(s) 441, 619, 636
PmaCI CACGTG 1 cut(s) 38
PmlI CACGTG 1 cut(s) 38
Ppu21I YACGTR 1 cut(s) 38
Psp124BI GAGCTC 2 cut(s) 417, 684
PspCI CACGTG 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 374
PspPI GGNCC 1 cut(s) 26
PspXI VCTCGAGB 2 cut(s) 305, 410
PvuII CAGCTG 1 cut(s) 442
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SacI GAGCTC 2 cut(s) 417, 684
SaqAI TTAA 4 cut(s) 495, 506, 654, 666
SatI GCNGC 3 cut(s) 440, 618, 635
Sau3AI GATC 3 cut(s) 10, 604, 643
Sau96I GGNCC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 3 cut(s) 417, 517, 684
Sfr274I CTCGAG 2 cut(s) 305, 410
SlaI CTCGAG 2 cut(s) 305, 410
SmlI CTYRAG 4 cut(s) 77, 305, 410, 494
SmoI CTYRAG 4 cut(s) 77, 305, 410, 494
Sse9I AATT 1 cut(s) 227
SsiI CCGC 4 cut(s) 53, 316, 391, 458
SspMI CTAG 2 cut(s) 621, 627
SstI GAGCTC 2 cut(s) 417, 684
StyD4I CCNGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 525
TaiI ACGT 1 cut(s) 40
TaqI TCGA 3 cut(s) 128, 306, 411
TasI AATT 1 cut(s) 227
TfiI GAWTC 2 cut(s) 345, 430
Tru1I TTAA 4 cut(s) 495, 506, 654, 666
Tru9I TTAA 4 cut(s) 495, 506, 654, 666
TscAI CASTG 1 cut(s) 591
TseI GCWGC 3 cut(s) 439, 617, 634
TspDTI ATGAA 2 cut(s) 148, 534
TspRI CASTG 1 cut(s) 591
Vha464I CTTAAG 1 cut(s) 494
XceI RCATGY 2 cut(s) 137, 706
XhoI CTCGAG 2 cut(s) 305, 410
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 2 cut(s) 621, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.