Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002290.1

Orthogroup ID

OG0015395

Physical Location & Seq

Genomic Coordinates Reverse (-)

48245 .. 48760

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002290.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atggattttttccaaaccccaagcaacaagaaccaattccatcacaagaaaaagaggctaacccaagaccaagtgaagcttctggagagaagcttcagctccgacaacaagctcgagccagaccgcaagctcctgctggccaaacagctcggaatcccagccagacaggttgccatttggtaccaaaacaagcgagcgcggtggaagacgcagagcctcgagctcggctacaatgcgattcaagtgcagctggagactgcattagcggaaaaaaggaaactggagaaagatgttgagaggcttaaaggagagttaaacagggttcatgaactgttgttggatttgaataaccaaagacaagcaggtggtgataatcatcctgtggtttgctcagtgttttcagcttctagtgatcaagagggtgctgctagctctagtttgcagcttggggatcatgtggttaatcatgaggttaaggagtttgaggagctctatgcttgtttgattggcatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

171

Amino Acids

19.61

Weight (kDa)

8.51

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53980
fragaria_vesca	FvH4_3g19270
malus_domestica	MD03G1235200.v1.1 MD11G1255700.v1.1
pyrus_communis	pycom03g18170 pycom11g22600
rosa_chinensis	RchiOBHm_Chr5g0032341
rosa_laevigata	RLG00000033388
rosa_multiflora	Rmu_sc0002290.1_g000010
rosa_roxburghii	Rroxscaffold_1G00048080
rosa_rugosa	Rorug05G0131400
rosa_samantha	Rh5AG224500 Rh5BG225400 Rh5CG251000 Rh5DG230100
rosa_wichuraiana	Rw5G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	353
Acc65I	GGTACC	1 cut(s)	180
AccB1I	GGYRCC	1 cut(s)	180
AccII	CGCG	1 cut(s)	199
AciI	CCGC	3 cut(s)	124, 199, 266
AclWI	GGATC	1 cut(s)	459
AcoI	YGGCCR	1 cut(s)	138
AcuI	CTGAAG	1 cut(s)	79
AfaI	GTAC	1 cut(s)	182
AgsI	TTSAA	2 cut(s)	242, 346
AjuI	GAANNNNNNNTTGG	2 cut(s)	63, 95
Alw21I	GWGCWC	2 cut(s)	225, 492
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	459
Ama87I	CYCGRG	2 cut(s)	113, 218
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	3 cut(s)	247, 425, 442
Asp700I	GAANNNNTTC	1 cut(s)	35
Asp718I	GGTACC	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	380
AsuNHI	GCTAGC	1 cut(s)	428
AvaI	CYCGRG	2 cut(s)	113, 218
BalI	TGGCCA	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	2 cut(s)	225, 492
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	2 cut(s)	225, 492
BbvI	GCAGC	3 cut(s)	259, 412, 454
BccI	CCATC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	3 cut(s)	408, 429, 435
BfuAI	ACCTGC	1 cut(s)	353
BisI	GCNGC	3 cut(s)	248, 426, 443
BlsI	GCNGC	3 cut(s)	249, 427, 444
BmeT110I	CYCGRG	2 cut(s)	113, 218
BmiI	GGNNCC	1 cut(s)	182
BmtI	GCTAGC	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	3 cut(s)	104, 272, 302
BsaBI	GATNNNNATC	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	375
BseGI	GGATG	1 cut(s)	376
BseJI	GATNNNNATC	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	1 cut(s)	285
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	3 cut(s)	259, 412, 454
BseYI	CCCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	180
BsiHKAI	GWGCWC	2 cut(s)	225, 492
BsiHKCI	CYCGRG	2 cut(s)	113, 218
BsmAI	GTCTC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	140
BsoBI	CYCGRG	2 cut(s)	113, 218
Bsp1286I	GDGCHC	2 cut(s)	225, 492
Bsp143I	GATC	2 cut(s)	412, 451
BspACI	CCGC	3 cut(s)	124, 199, 266
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	404
BspFNI	CGCG	1 cut(s)	199
BspHI	TCATGA	2 cut(s)	325, 466
BspLI	GGNNCC	1 cut(s)	182
BspMI	ACCTGC	1 cut(s)	353
BspOI	GCTAGC	1 cut(s)	432
BspPI	GGATC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	285
BssMI	GATC	2 cut(s)	412, 451
Bst4CI	ACNGT	1 cut(s)	333
BstC8I	GCNNGC	4 cut(s)	128, 138, 195, 430
BstDEI	CTNAG	1 cut(s)	391
BstF5I	GGATG	1 cut(s)	376
BstFNI	CGCG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	2 cut(s)	415, 454
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	2 cut(s)	412, 451
BstNSI	RCATGY	1 cut(s)	514
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	3 cut(s)	259, 412, 454
BstV2I	GAAGAC	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	399
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	4 cut(s)	128, 138, 195, 430
CciI	TCATGA	2 cut(s)	325, 466
CfoI	GCGC	1 cut(s)	199
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	4 cut(s)	326, 455, 467, 511
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	391
DpnI	GATC	2 cut(s)	414, 453
DpnII	GATC	2 cut(s)	412, 451
EaeI	YGGCCR	1 cut(s)	138
Ecl136II	GAGCTC	2 cut(s)	223, 490
Eco24I	GRGCYC	2 cut(s)	225, 492
Eco53kI	GAGCTC	2 cut(s)	223, 490
Eco57I	CTGAAG	1 cut(s)	79
Eco88I	CYCGRG	2 cut(s)	113, 218
EcoICRI	GAGCTC	2 cut(s)	223, 490
EcoT38I	GRGCYC	2 cut(s)	225, 492
FaeI	CATG	4 cut(s)	329, 458, 470, 514
FaiI	YATR	5 cut(s)	327, 456, 468, 495, 512
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FatI	CATG	4 cut(s)	325, 454, 466, 510
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	3 cut(s)	248, 426, 443
FokI	GGATG	1 cut(s)	363
FriOI	GRGCYC	2 cut(s)	225, 492
Fsp4HI	GCNGC	3 cut(s)	248, 426, 443
FspBI	CTAG	3 cut(s)	408, 429, 435
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	3 cut(s)	248, 426, 443
GsaI	CCCAGC	1 cut(s)	161
GsuI	CTGGAG	3 cut(s)	104, 272, 302
HaeIII	GGCC	1 cut(s)	140
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	4 cut(s)	329, 458, 470, 514
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HindIII	AAGCTT	2 cut(s)	77, 91
HinfI	GANTC	2 cut(s)	153, 238
HphI	GGTGA	1 cut(s)	380
Hpy188I	TCNGA	2 cut(s)	103, 152
Hpy188III	TCNNGA	4 cut(s)	83, 326, 416, 467
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4V	TGCA	3 cut(s)	247, 260, 442
HpyF3I	CTNAG	1 cut(s)	391
Hsp92II	CATG	4 cut(s)	329, 458, 470, 514
HspAI	GCGC	1 cut(s)	197
KpnI	GGTACC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	412, 451
LmnI	GCTCC	3 cut(s)	104, 135, 487
Lsp1109I	GCAGC	3 cut(s)	259, 412, 454
MaeI	CTAG	3 cut(s)	408, 429, 435
MalI	GATC	2 cut(s)	414, 453
MboI	GATC	2 cut(s)	412, 451
MboII	GAAGA	1 cut(s)	217
MhlI	GDGCHC	2 cut(s)	225, 492
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	1 cut(s)	35
MluNI	TGGCCA	1 cut(s)	140
MmeI	TCCRAC	2 cut(s)	126, 318
MnlI	CCTC	6 cut(s)	48, 227, 291, 412, 463, 478
Mox20I	TGGCCA	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	4 cut(s)	303, 314, 462, 474
Msp20I	TGGCCA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	250
MvnI	CGCG	1 cut(s)	199
NdeII	GATC	2 cut(s)	412, 451
NheI	GCTAGC	1 cut(s)	428
NlaIII	CATG	4 cut(s)	329, 458, 470, 514
NlaIV	GGNNCC	1 cut(s)	182
NmeAIII	GCCGAG	1 cut(s)	204
NspI	RCATGY	1 cut(s)	514
PaeR7I	CTCGAG	2 cut(s)	113, 218
PagI	TCATGA	2 cut(s)	325, 466
PaqCI	CACCTGC	1 cut(s)	353
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	2 cut(s)	153, 238
PkrI	GCNGC	3 cut(s)	249, 427, 444
Psp124BI	GAGCTC	2 cut(s)	225, 492
PspFI	CCCAGC	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	182
PspXI	VCTCGAGB	2 cut(s)	113, 218
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SacI	GAGCTC	2 cut(s)	225, 492
SaqAI	TTAA	4 cut(s)	303, 314, 462, 474
SatI	GCNGC	3 cut(s)	248, 426, 443
Sau3AI	GATC	2 cut(s)	412, 451
SduI	GDGCHC	2 cut(s)	225, 492
Sfr274I	CTCGAG	2 cut(s)	113, 218
SlaI	CTCGAG	2 cut(s)	113, 218
SmlI	CTYRAG	2 cut(s)	113, 218
SmoI	CTYRAG	2 cut(s)	113, 218
Sse9I	AATT	1 cut(s)	35
SsiI	CCGC	3 cut(s)	124, 199, 266
SspMI	CTAG	3 cut(s)	408, 429, 435
SstI	GAGCTC	2 cut(s)	225, 492
TaaI	ACNGT	1 cut(s)	333
TaqI	TCGA	2 cut(s)	114, 219
TasI	AATT	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	153, 238
Tru1I	TTAA	4 cut(s)	303, 314, 462, 474
Tru9I	TTAA	4 cut(s)	303, 314, 462, 474
TscAI	CASTG	1 cut(s)	399
TseI	GCWGC	3 cut(s)	247, 425, 442
TspDTI	ATGAA	2 cut(s)	314, 342
TspRI	CASTG	1 cut(s)	399
XceI	RCATGY	1 cut(s)	514
XhoI	CTCGAG	2 cut(s)	113, 218
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	3 cut(s)	408, 429, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.