Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015395

Physical Location & Seq

Genomic Coordinates Reverse (-)

12452383 .. 12452901

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGATTTCTTCCAACCTTCAAGCAACAATAACCGAATCCATCACAACAAGAAGAGGCTGACCCAAGACCAAGTGAAGCTCCTGGAGAGAAGCTTCAGCTCCAACAACAAGCTCGAGCCAGAACGGAAGCTTCTGCTGGCCAAACAGCTGGGAATCCCGGCCAGACAGGTTGCTATTTGGTACCAAAACAAGCGAGCCCGGTGGAAGACGCAGAGCCTCGAGGTTGGCTACAATGCTCTCCAGATGAAGCTGGACACTGCATTAGCGGAAAAGCGGAGACTGGAGAAAGATGTTGAGAGGCTTAAAGGAGAGTTAAACAGGGCTCATGAACTGTGTTTGGCTTTGAACAACCAGAGACAAGTGAGTAGTGGTGATAATCATCCTGTGGTTTGTTCAGTGTTTTCGTCTTCTTGTGATCAAGAGGGTGCTGCTAGCTCTAGTTTGCTTGGGGATCATGTGGTTAATCGTGAGATTAGGGAGTATGAGGACCTCTACGCTTGTTTGATCGGCATGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

173

Amino Acids

19.77

Weight (kDa)

9.1

Isoelectric Point (pI)

56.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	17 - 69	1.5e-15	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53980
fragaria_vesca	FvH4_3g19270
malus_domestica	MD03G1235200.v1.1 MD11G1255700.v1.1
pyrus_communis	pycom03g18170 pycom11g22600
rosa_chinensis	RchiOBHm_Chr5g0032341
rosa_laevigata	RLG00000033388
rosa_multiflora	Rmu_sc0002290.1_g000010
rosa_roxburghii	Rroxscaffold_1G00048080
rosa_rugosa	Rorug05G0131400
rosa_samantha	Rh5AG224500 Rh5BG225400 Rh5CG251000 Rh5DG230100
rosa_wichuraiana	Rw5G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	218
Acc65I	GGTACC	1 cut(s)	180
AccB1I	GGYRCC	1 cut(s)	180
AciI	CCGC	2 cut(s)	266, 274
AclWI	GGATC	1 cut(s)	459
AcoI	YGGCCR	2 cut(s)	138, 159
AcuI	CTGAAG	1 cut(s)	79
AfaI	GTAC	1 cut(s)	182
AgsI	TTSAA	2 cut(s)	21, 346
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	8 cut(s)	79, 93, 99, 112, 130, 148, 250, 435
AluI	AGCT	8 cut(s)	79, 93, 99, 112, 130, 148, 250, 435
Alw26I	GTCTC	2 cut(s)	271, 349
AlwI	GGATC	1 cut(s)	459
Ama87I	CYCGRG	2 cut(s)	113, 218
AoxI	GGCC	2 cut(s)	138, 159
ApeKI	GCWGC	1 cut(s)	428
Asp718I	GGTACC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	487
AsuC2I	CCSGG	2 cut(s)	158, 199
AsuHPI	GGTGA	1 cut(s)	383
AsuNHI	GCTAGC	1 cut(s)	431
AvaI	CYCGRG	2 cut(s)	113, 218
AvaII	GGWCC	1 cut(s)	487
BalI	TGGCCA	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	2 cut(s)	199, 325
BbsI	GAAGAC	2 cut(s)	212, 399
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	83
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	2 cut(s)	158, 199
BcoDI	GTCTC	2 cut(s)	271, 349
BfaI	CTAG	2 cut(s)	432, 438
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	3 cut(s)	83, 158, 199
Bme18I	GGWCC	1 cut(s)	487
BmeT110I	CYCGRG	2 cut(s)	113, 218
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	1 cut(s)	182
BmrFI	CCNGG	3 cut(s)	83, 158, 199
BmtI	GCTAGC	1 cut(s)	435
BpiI	GAAGAC	2 cut(s)	212, 399
BpmI	CTGGAG	3 cut(s)	104, 224, 302
BpuMI	CCSGG	2 cut(s)	158, 199
BsaBI	GATNNNNATC	1 cut(s)	378
Bse1I	ACTGG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	83
BseGI	GGATG	1 cut(s)	379
BseJI	GATNNNNATC	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	415
BseYI	CCCAGC	1 cut(s)	148
BshFI	GGCC	2 cut(s)	140, 161
BshNI	GGYRCC	1 cut(s)	180
BsiHKCI	CYCGRG	2 cut(s)	113, 218
BsiSI	CCGG	2 cut(s)	158, 199
BsmAI	GTCTC	2 cut(s)	271, 349
BsnI	GGCC	2 cut(s)	140, 161
BsoBI	CYCGRG	2 cut(s)	113, 218
Bsp1286I	GDGCHC	2 cut(s)	199, 325
Bsp143I	GATC	3 cut(s)	415, 451, 504
BspACI	CCGC	2 cut(s)	266, 274
BspANI	GGCC	2 cut(s)	140, 161
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	182
BspOI	GCTAGC	1 cut(s)	435
BspPI	GGATC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	285
BssMI	GATC	3 cut(s)	415, 451, 504
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	333
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	4 cut(s)	138, 195, 433, 512
BstF5I	GGATG	1 cut(s)	379
BstKTI	GATC	3 cut(s)	418, 454, 507
BstMAI	GTCTC	2 cut(s)	271, 349
BstMBI	GATC	3 cut(s)	415, 451, 504
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	3 cut(s)	81, 156, 197
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	2 cut(s)	212, 399
BstXI	CCANNNNNNTGG	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	140, 161
BtsCI	GGATG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	255, 402
Cac8I	GCNNGC	4 cut(s)	138, 195, 433, 512
CciI	TCATGA	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	487
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	3 cut(s)	326, 455, 511
CviQI	GTAC	1 cut(s)	181
DpnI	GATC	3 cut(s)	417, 453, 506
DpnII	GATC	3 cut(s)	415, 451, 504
EaeI	YGGCCR	2 cut(s)	138, 159
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco24I	GRGCYC	2 cut(s)	199, 325
Eco47I	GGWCC	1 cut(s)	487
Eco57I	CTGAAG	1 cut(s)	79
Eco88I	CYCGRG	2 cut(s)	113, 218
EcoO109I	RGGNCCY	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	81
EcoT38I	GRGCYC	2 cut(s)	199, 325
FaeI	CATG	3 cut(s)	329, 458, 514
FaiI	YATR	4 cut(s)	327, 456, 483, 512
FatI	CATG	3 cut(s)	325, 454, 510
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	1 cut(s)	366
FriOI	GRGCYC	2 cut(s)	199, 325
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	2 cut(s)	432, 438
GluI	GCNGC	1 cut(s)	429
GsaI	CCCAGC	1 cut(s)	152
GsuI	CTGGAG	3 cut(s)	104, 224, 302
HaeIII	GGCC	2 cut(s)	140, 161
HapII	CCGG	2 cut(s)	158, 199
HgaI	GACGC	1 cut(s)	217
Hin1II	CATG	3 cut(s)	329, 458, 514
HindIII	AAGCTT	2 cut(s)	91, 128
HinfI	GANTC	2 cut(s)	36, 153
HpaII	CCGG	2 cut(s)	158, 199
HphI	GGTGA	1 cut(s)	383
Hpy188III	TCNNGA	4 cut(s)	241, 326, 419, 467
HpyAV	CCTTC	1 cut(s)	27
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4V	TGCA	2 cut(s)	260, 514
Hsp92II	CATG	3 cut(s)	329, 458, 514
KpnI	GGTACC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	415, 451, 504
LmnI	GCTCC	2 cut(s)	84, 104
Lsp1109I	GCAGC	1 cut(s)	415
MaeI	CTAG	2 cut(s)	432, 438
MalI	GATC	3 cut(s)	417, 453, 506
MboI	GATC	3 cut(s)	415, 451, 504
MboII	GAAGA	3 cut(s)	64, 217, 399
MhlI	GDGCHC	2 cut(s)	199, 325
MlsI	TGGCCA	1 cut(s)	140
MluNI	TGGCCA	1 cut(s)	140
MmeI	TCCRAC	2 cut(s)	37, 126
MnlI	CCTC	7 cut(s)	48, 214, 227, 291, 415, 478, 500
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	3 cut(s)	303, 314, 462
Msp20I	TGGCCA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	2 cut(s)	158, 199
MspR9I	CCNGG	3 cut(s)	83, 158, 199
MvaI	CCWGG	1 cut(s)	83
NciI	CCSGG	2 cut(s)	158, 199
NdeII	GATC	3 cut(s)	415, 451, 504
NheI	GCTAGC	1 cut(s)	431
NlaIII	CATG	3 cut(s)	329, 458, 514
NlaIV	GGNNCC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	514
PaeI	GCATGC	1 cut(s)	514
PaeR7I	CTCGAG	2 cut(s)	113, 218
PagI	TCATGA	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	36, 153
PfoI	TCCNGGA	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	430
PpuMI	RGGWCCY	1 cut(s)	487
Psp5II	RGGWCCY	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	81
PspFI	CCCAGC	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	487
PspPPI	RGGWCCY	1 cut(s)	487
PspXI	VCTCGAGB	2 cut(s)	113, 218
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SaqAI	TTAA	3 cut(s)	303, 314, 462
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	3 cut(s)	415, 451, 504
Sau96I	GGNCC	1 cut(s)	487
ScrFI	CCNGG	3 cut(s)	83, 158, 199
SduI	GDGCHC	2 cut(s)	199, 325
Sfr274I	CTCGAG	2 cut(s)	113, 218
SinI	GGWCC	1 cut(s)	487
SlaI	CTCGAG	2 cut(s)	113, 218
SmlI	CTYRAG	2 cut(s)	113, 218
SmoI	CTYRAG	2 cut(s)	113, 218
SphI	GCATGC	1 cut(s)	514
SsiI	CCGC	2 cut(s)	266, 274
SspMI	CTAG	2 cut(s)	432, 438
StyD4I	CCNGG	3 cut(s)	81, 156, 197
TaaI	ACNGT	1 cut(s)	333
TaqI	TCGA	2 cut(s)	114, 219
TfiI	GAWTC	2 cut(s)	36, 153
Tru1I	TTAA	3 cut(s)	303, 314, 462
Tru9I	TTAA	3 cut(s)	303, 314, 462
TscAI	CASTG	2 cut(s)	262, 402
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	2 cut(s)	260, 342
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	2 cut(s)	262, 402
VpaK11BI	GGWCC	1 cut(s)	487
XceI	RCATGY	1 cut(s)	514
XhoI	CTCGAG	2 cut(s)	113, 218
XspI	CTAG	2 cut(s)	432, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.