Rorug05G0131400

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015395
Physical Location & Seq
Reverse (-)
11714918 .. 11715651
734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0131400.1

Sequence Viewer

Length: 591 bp
ATGAACGACGAGCTCTGCAACCCCCTACTCTGGTCCACCAATTCCTCTGCCGCCGTCGCTGCTGCTACCACAGCAAACGGACATTCTTCGCTCTCAAACGGCGCCGTTCATAGCGATTCGTCTTCTTCTAACAACACAAATACCCAAAATCACGGAGACTCGAGCGGCGGCGGCGGTCTTGGAAATGGCGGAGCTCTTGAGGAGGCTCGGTTTCGGTATAGGAACTCCGTGACGGTGCTCCGGGCTGTTCTGGCAGAAATTCCTAATTCTCAGAAGCAATGCTTCGTATCCGCGAATAAGTACATGGAGTCGTGGGTGGTGATGGAGAGTTCGAAGGCACAGGGCTTGTGGAGGACATCCTCGGTGCCTTTAACGGGTGAGGCAGGGGATGAGGAAGAGGTTGCTGGAGATGAGGTGGAGAGAAAGATGCCGGAGATTCGGAAGATGAAGAAGAGAAAAGCAGCAGTAGCGGCGGCGGCTCCCAAGAGCGCCGGCGACGGTGAAGGCGGTGGAGAATCGGAGGAGGGAAGGAAGGATGATGACGGCAGAGGCGGAGCGAGGAAGGTGGCGACGCTGCGAAGGTTGCAGTGA

Protein Analysis

196

Amino Acids

20.56

Weight (kDa)

5.98

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53980
fragaria_vesca FvH4_3g19270
malus_domestica MD03G1235200.v1.1 MD11G1255700.v1.1
pyrus_communis pycom03g18170 pycom11g22600
rosa_chinensis RchiOBHm_Chr5g0032341
rosa_laevigata RLG00000033388
rosa_multiflora Rmu_sc0002290.1_g000010
rosa_roxburghii Rroxscaffold_1G00048080
rosa_rugosa Rorug05G0131400
rosa_samantha Rh5AG224500 Rh5BG225400 Rh5CG251000 Rh5DG230100
rosa_wichuraiana Rw5G020510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 101, 364
AccBSI CCGCTC 1 cut(s) 165
AccII CGCG 1 cut(s) 293
AcsI RAATTY 1 cut(s) 258
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 2 cut(s) 30, 374
AluBI AGCT 2 cut(s) 13, 194
AluI AGCT 2 cut(s) 13, 194
Alw21I GWGCWC 3 cut(s) 15, 196, 240
Alw26I GTCTC 1 cut(s) 150
Ama87I CYCGRG 1 cut(s) 160
ApeKI GCWGC 4 cut(s) 59, 62, 461, 574
ApoI RAATTY 1 cut(s) 258
AspLEI GCGC 2 cut(s) 104, 491
AspS9I GGNCC 1 cut(s) 33
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 3 cut(s) 331, 389, 512
AsuII TTCGAA 1 cut(s) 332
AvaI CYCGRG 1 cut(s) 160
AvaII GGWCC 1 cut(s) 33
BanI GGYRCC 2 cut(s) 101, 364
BanII GRGCYC 2 cut(s) 15, 196
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 3 cut(s) 15, 196, 240
BbvI GCAGC 4 cut(s) 46, 49, 473, 561
BccI CCATC 1 cut(s) 316
BceAI ACGGC 4 cut(s) 38, 89, 115, 559
BciVI GTATCC 1 cut(s) 298
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 150
BfoI RGCGCY 2 cut(s) 105, 492
BfuI GTATCC 1 cut(s) 298
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 33
BmeT110I CYCGRG 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 3 cut(s) 103, 366, 480
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 417
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 426
Bpu14I TTCGAA 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 360
BsaXI ACNNNNNCTCC 4 cut(s) 194, 224, 399, 429
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 374
Bse118I RCCGGY 1 cut(s) 491
Bse3DI GCAATG 1 cut(s) 284
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 3 cut(s) 356, 394, 541
BseLI CCNNNNNNNGG 2 cut(s) 30, 374
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 284
BseRI GAGGAG 2 cut(s) 215, 536
BseXI GCAGC 4 cut(s) 46, 49, 473, 561
Bsh1236I CGCG 1 cut(s) 293
BshNI GGYRCC 2 cut(s) 101, 364
BsiHKAI GWGCWC 3 cut(s) 15, 196, 240
BsiHKCI CYCGRG 1 cut(s) 160
BsiSI CCGG 3 cut(s) 241, 431, 492
BslI CCNNNNNNNGG 2 cut(s) 30, 374
BsmAI GTCTC 1 cut(s) 150
BsoBI CYCGRG 1 cut(s) 160
Bsp119I TTCGAA 1 cut(s) 332
Bsp1286I GDGCHC 3 cut(s) 15, 196, 240
BspCNI CTCAG 1 cut(s) 283
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 3 cut(s) 103, 366, 480
BspT104I TTCGAA 1 cut(s) 332
BspT107I GGYRCC 2 cut(s) 101, 364
BsrBI CCGCTC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 284
BsrFI RCCGGY 1 cut(s) 491
BssAI RCCGGY 1 cut(s) 491
BssECI CCNNGG 1 cut(s) 360
BssNI GRCGYC 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 235, 500
Bst6I CTCTTC 2 cut(s) 390, 446
BstACI GRCGYC 1 cut(s) 102
BstBI TTCGAA 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 493
BstDEI CTNAG 1 cut(s) 270
BstF5I GGATG 3 cut(s) 356, 394, 541
BstFNI CGCG 1 cut(s) 293
BstH2I RGCGCY 2 cut(s) 105, 492
BstHHI GCGC 2 cut(s) 104, 491
BstMAI GTCTC 1 cut(s) 150
BstMWI GCNNNNNNNGC 9 cut(s) 56, 59, 71, 171, 251, 467, 470, 476, 583
BstSCI CCNGG 1 cut(s) 240
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 4 cut(s) 46, 49, 473, 561
BstV2I GAAGAC 1 cut(s) 114
BsuI GTATCC 1 cut(s) 298
BtsCI GGATG 3 cut(s) 356, 394, 541
Cac8I GCNNGC 1 cut(s) 493
CfoI GCGC 2 cut(s) 104, 491
Cfr10I RCCGGY 1 cut(s) 491
Cfr13I GGNCC 1 cut(s) 33
CseI GACGC 1 cut(s) 580
Csp6I GTAC 1 cut(s) 301
CviAII CATG 1 cut(s) 304
CviJI RGCY 6 cut(s) 13, 194, 206, 245, 345, 479
CviKI_1 RGCY 6 cut(s) 13, 194, 206, 245, 345, 479
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 1 cut(s) 270
DinI GGCGCC 1 cut(s) 103
Eam1104I CTCTTC 2 cut(s) 390, 446
EarI CTCTTC 2 cut(s) 390, 446
EciI GGCGGA 2 cut(s) 204, 567
Ecl136II GAGCTC 2 cut(s) 13, 194
Eco24I GRGCYC 2 cut(s) 15, 196
Eco47I GGWCC 1 cut(s) 33
Eco53kI GAGCTC 2 cut(s) 13, 194
Eco88I CYCGRG 1 cut(s) 160
EcoICRI GAGCTC 2 cut(s) 13, 194
EcoT38I GRGCYC 2 cut(s) 15, 196
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
FaeI CATG 1 cut(s) 307
FaiI YATR 3 cut(s) 111, 219, 305
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 1 cut(s) 303
FokI GGATG 3 cut(s) 343, 401, 548
FriOI GRGCYC 2 cut(s) 15, 196
GlaI GCGC 2 cut(s) 103, 490
GsuI CTGGAG 1 cut(s) 426
HaeII RGCGCY 2 cut(s) 105, 492
HapII CCGG 3 cut(s) 241, 431, 492
HgaI GACGC 1 cut(s) 580
HhaI GCGC 2 cut(s) 104, 491
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 1 cut(s) 307
Hin6I GCGC 2 cut(s) 102, 489
HinP1I GCGC 2 cut(s) 102, 489
HinfI GANTC 5 cut(s) 116, 158, 308, 436, 515
HpaII CCGG 3 cut(s) 241, 431, 492
HphI GGTGA 3 cut(s) 331, 389, 512
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 3 cut(s) 273, 441, 520
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 36
Hpy99I CGWCG 4 cut(s) 11, 59, 500, 574
HpyAV CCTTC 6 cut(s) 328, 497, 522, 526, 556, 573
HpyCH4III ACNGT 2 cut(s) 235, 500
HpyCH4V TGCA 2 cut(s) 18, 586
HpyF10VI GCNNNNNNNGC 9 cut(s) 56, 59, 71, 171, 251, 467, 470, 476, 583
HpyF3I CTNAG 1 cut(s) 270
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 1 cut(s) 307
HspAI GCGC 2 cut(s) 102, 489
KasI GGCGCC 1 cut(s) 101
KroI GCCGGC 1 cut(s) 491
KroNI GCCGGC 1 cut(s) 493
LmnI GCTCC 4 cut(s) 191, 243, 484, 554
LpnPI CCDG 8 cut(s) 16, 236, 254, 326, 369, 390, 444, 505
Lsp1109I GCAGC 4 cut(s) 46, 49, 473, 561
LweI GCATC 1 cut(s) 417
MaeIII GTNAC 1 cut(s) 229
MbiI CCGCTC 1 cut(s) 165
MboII GAAGA 7 cut(s) 78, 114, 117, 407, 454, 460, 463
MhlI GDGCHC 3 cut(s) 15, 196, 240
MluCI AATT 3 cut(s) 40, 258, 265
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 2 cut(s) 152, 317
MreI CGCCGGCG 1 cut(s) 491
MroNI GCCGGC 1 cut(s) 491
MseI TTAA 1 cut(s) 371
MspI CCGG 3 cut(s) 241, 431, 492
MspR9I CCNGG 1 cut(s) 242
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 9 cut(s) 56, 59, 71, 171, 251, 467, 470, 476, 583
NaeI GCCGGC 1 cut(s) 493
NarI GGCGCC 1 cut(s) 102
NciI CCSGG 1 cut(s) 242
NgoMIV GCCGGC 1 cut(s) 491
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 3 cut(s) 103, 366, 480
NmuCI GTSAC 1 cut(s) 229
NspV TTCGAA 1 cut(s) 332
PaeR7I CTCGAG 1 cut(s) 160
PdiI GCCGGC 1 cut(s) 493
PfeI GAWTC 3 cut(s) 116, 436, 515
PleI GAGTC 2 cut(s) 152, 316
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 2 cut(s) 152, 316
Psp124BI GAGCTC 2 cut(s) 15, 196
PspN4I GGNNCC 3 cut(s) 103, 366, 480
PspPI GGNCC 1 cut(s) 33
PspXI VCTCGAGB 1 cut(s) 160
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SacI GAGCTC 2 cut(s) 15, 196
SaqAI TTAA 1 cut(s) 371
Sau96I GGNCC 1 cut(s) 33
SchI GAGTC 2 cut(s) 152, 317
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 3 cut(s) 15, 196, 240
SetI ASST 6 cut(s) 15, 196, 402, 417, 567, 584
SfaNI GCATC 1 cut(s) 417
SfoI GGCGCC 1 cut(s) 103
Sfr274I CTCGAG 1 cut(s) 160
SfuI TTCGAA 1 cut(s) 332
SgrAI CRCCGGYG 1 cut(s) 491
SinI GGWCC 1 cut(s) 33
SlaI CTCGAG 1 cut(s) 160
SmlI CTYRAG 2 cut(s) 160, 197
SmoI CTYRAG 2 cut(s) 160, 197
Sse9I AATT 3 cut(s) 40, 258, 265
SspDI GGCGCC 1 cut(s) 101
SstI GAGCTC 2 cut(s) 15, 196
StyD4I CCNGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 235, 500
TaqI TCGA 2 cut(s) 161, 332
TasI AATT 3 cut(s) 40, 258, 265
TatI WGTACW 1 cut(s) 300
TauI GCSGC 7 cut(s) 53, 168, 171, 174, 473, 476, 479
TfiI GAWTC 3 cut(s) 116, 436, 515
Tru1I TTAA 1 cut(s) 371
Tru9I TTAA 1 cut(s) 371
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 4 cut(s) 59, 62, 461, 574
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 3 cut(s) 17, 98, 461
TspGWI ACGGA 3 cut(s) 93, 168, 217
VpaK11BI GGWCC 1 cut(s) 33
XapI RAATTY 1 cut(s) 258
XhoI CTCGAG 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.