RLG00000033388

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015395
Physical Location & Seq
Reverse (-)
26520806 .. 26525040
4235 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033388

Sequence Viewer

Length: 840 bp
ATGGATTTTTTCCAAACCCCAAGCAACAAGAACCAATTCCATCACAAGAAAAAGAGGCTAACCCAAGACCAAGTGAAGCTTCTGGAGAGAAGCTTCAGCTCCAACAACAAGCTCGAGCCAGACCGCAAGCTCCTGCTGGCCAAACAGCTCCGAATCCCGGCCAGACAGGTTGCCATTTGGTACCAAAACAAGCGAGCGCGGTGGAAGACGCAGAGCCTCGAGCTCGGCTACAATGCGATCCAAGTGCAGCTGGAGACTGCATTAGCGGAAAAGAGGAAACTGGAGAAAGATGTTGAGAGGCTTAAAGGAGAGTTAAACAGGGCTCATGAACTGTTGTTGGCTTTGAATAACCAAAGACAAGTAGGTGGTGATAATCATCCTGTGGTTTGCTCAGTGTTTTCAGCTTCTTGTGATCAAGAGGGTGCTGCTAGCTCTAGTTTGCAGCTTGGGGATCATGTTGTTAATCATGAGATTAAGGAGTTTGAGGAGCTCTATGCTTGTTTGATTGGCATGTCTCCTCCTCTTCTTATAGCATCGCTCATATCGCGATGGCATGGCCTGGTGTCGGTGTCAACCTTGGTCGCGCTGATGCTGTGGAGCTGTTGTTGGACGGGTGGCCGTTTTAGAGCTTGCTTTCAGGGCTGGGGGTGGATTTTGGCTTGGAGGCGAATCAATGGTGGTGTCGGTTTTGGATCTGGTCTCAATGCAGCGTTGAGGTGGTGTGGTCGTGAAGGGTTTCATGGGACTGCTAGGCGACGTGGGATGGTTCACCAGATGAAAATGACTGTGTGTTGGAGTAAAGTGGTTCACCAAAAGGTGGCGGCTATGCGTTGGTACTAA

Protein Analysis

280

Amino Acids

31.9

Weight (kDa)

9.9

Isoelectric Point (pI)

55.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 16 - 69 3.2e-14 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53980
fragaria_vesca FvH4_3g19270
malus_domestica MD03G1235200.v1.1 MD11G1255700.v1.1
pyrus_communis pycom03g18170 pycom11g22600
rosa_chinensis RchiOBHm_Chr5g0032341
rosa_laevigata RLG00000033388
rosa_multiflora Rmu_sc0002290.1_g000010
rosa_roxburghii Rroxscaffold_1G00048080
rosa_rugosa Rorug05G0131400
rosa_samantha Rh5AG224500 Rh5BG225400 Rh5CG251000 Rh5DG230100
rosa_wichuraiana Rw5G020510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 180
AccB7I CCANNNNNTGG 1 cut(s) 817
AccII CGCG 3 cut(s) 199, 547, 584
AciI CCGC 4 cut(s) 124, 199, 266, 821
AclWI GGATC 3 cut(s) 232, 459, 700
AcoI YGGCCR 3 cut(s) 138, 159, 616
AcuI CTGAAG 1 cut(s) 79
AfaI GTAC 2 cut(s) 182, 836
AfiI CCNNNNNNNGG 3 cut(s) 157, 565, 817
AgsI TTSAA 1 cut(s) 346
AjiI CACGTC 1 cut(s) 758
AjnI CCWGG 1 cut(s) 558
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
Alw21I GWGCWC 2 cut(s) 225, 492
Alw26I GTCTC 3 cut(s) 248, 519, 704
AlwI GGATC 3 cut(s) 232, 459, 700
Ama87I CYCGRG 2 cut(s) 113, 218
AoxI GGCC 4 cut(s) 138, 159, 556, 616
ApeKI GCWGC 4 cut(s) 247, 425, 442, 707
Asp700I GAANNNNTTC 2 cut(s) 35, 735
Asp718I GGTACC 1 cut(s) 180
AspLEI GCGC 2 cut(s) 199, 586
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 3 cut(s) 380, 761, 800
AsuNHI GCTAGC 1 cut(s) 428
AvaI CYCGRG 2 cut(s) 113, 218
BalI TGGCCA 1 cut(s) 140
BanI GGYRCC 1 cut(s) 180
BanII GRGCYC 3 cut(s) 225, 325, 492
BbsI GAAGAC 1 cut(s) 212
Bbv12I GWGCWC 2 cut(s) 225, 492
BbvI GCAGC 4 cut(s) 259, 412, 454, 719
BccI CCATC 3 cut(s) 48, 543, 757
BceAI ACGGC 1 cut(s) 603
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 1 cut(s) 560
BclI TGATCA 1 cut(s) 412
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 3 cut(s) 248, 519, 704
BfaI CTAG 3 cut(s) 429, 435, 750
BisI GCNGC 5 cut(s) 248, 426, 443, 708, 822
BlsI GCNGC 5 cut(s) 249, 427, 444, 709, 823
Bme1390I CCNGG 2 cut(s) 158, 560
BmeT110I CYCGRG 2 cut(s) 113, 218
BmgBI CACGTC 1 cut(s) 758
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 2 cut(s) 158, 560
BmsI GCATC 2 cut(s) 542, 579
BmtI GCTAGC 1 cut(s) 432
BpiI GAAGAC 1 cut(s) 212
BpmI CTGGAG 3 cut(s) 104, 272, 302
BpuMI CCSGG 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 704
BsaJI CCNNGG 1 cut(s) 576
BsaXI ACNNNNNCTCC 2 cut(s) 589, 619
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 565, 817
Bse1I ACTGG 1 cut(s) 285
Bse8I GATNNNNATC 1 cut(s) 375
BseBI CCWGG 1 cut(s) 560
BseDI CCNNGG 1 cut(s) 576
BseGI GGATG 2 cut(s) 376, 768
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 3 cut(s) 157, 565, 817
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 1 cut(s) 285
BseRI GAGGAG 3 cut(s) 500, 507, 510
BseXI GCAGC 4 cut(s) 259, 412, 454, 719
BseYI CCCAGC 1 cut(s) 642
BsgI GTGCAG 1 cut(s) 266
Bsh1236I CGCG 3 cut(s) 199, 547, 584
BshFI GGCC 4 cut(s) 140, 161, 558, 618
BshNI GGYRCC 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 225, 492
BsiHKCI CYCGRG 2 cut(s) 113, 218
BsiSI CCGG 1 cut(s) 158
BslFI GGGAC 1 cut(s) 757
BslI CCNNNNNNNGG 3 cut(s) 157, 565, 817
BsmAI GTCTC 3 cut(s) 248, 519, 704
BsmFI GGGAC 1 cut(s) 757
BsnI GGCC 4 cut(s) 140, 161, 558, 618
Bso31I GGTCTC 1 cut(s) 704
BsoBI CYCGRG 2 cut(s) 113, 218
Bsp1286I GDGCHC 3 cut(s) 225, 325, 492
Bsp143I GATC 4 cut(s) 237, 412, 451, 692
Bsp68I TCGCGA 1 cut(s) 547
BspACI CCGC 4 cut(s) 124, 199, 266, 821
BspANI GGCC 4 cut(s) 140, 161, 558, 618
BspCNI CTCAG 1 cut(s) 404
BspFNI CGCG 3 cut(s) 199, 547, 584
BspHI TCATGA 2 cut(s) 325, 466
BspLI GGNNCC 1 cut(s) 182
BspOI GCTAGC 1 cut(s) 432
BspPI GGATC 3 cut(s) 232, 459, 700
BspT107I GGYRCC 1 cut(s) 180
BspTNI GGTCTC 1 cut(s) 704
BsrI ACTGG 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 576
BssMI GATC 4 cut(s) 237, 412, 451, 692
BssT1I CCWWGG 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 560
Bst4CI ACNGT 2 cut(s) 333, 787
Bst6I CTCTTC 1 cut(s) 528
BstC8I GCNNGC 5 cut(s) 128, 138, 195, 430, 631
BstDEI CTNAG 1 cut(s) 391
BstF5I GGATG 2 cut(s) 376, 768
BstFNI CGCG 3 cut(s) 199, 547, 584
BstHHI GCGC 2 cut(s) 199, 586
BstKTI GATC 4 cut(s) 240, 415, 454, 695
BstMAI GTCTC 3 cut(s) 248, 519, 704
BstMBI GATC 4 cut(s) 237, 412, 451, 692
BstMWI GCNNNNNNNGC 2 cut(s) 544, 639
BstNI CCWGG 1 cut(s) 560
BstNSI RCATGY 1 cut(s) 514
BstSCI CCNGG 2 cut(s) 156, 558
BstUI CGCG 3 cut(s) 199, 547, 584
BstV1I GCAGC 4 cut(s) 259, 412, 454, 719
BstV2I GAAGAC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 692
BstYI RGATCY 1 cut(s) 692
BsuRI GGCC 4 cut(s) 140, 161, 558, 618
BtgZI GCGATG 2 cut(s) 519, 562
BtrI CACGTC 1 cut(s) 758
BtsCI GGATG 2 cut(s) 376, 768
BtsIMutI CAGTG 1 cut(s) 399
BtuMI TCGCGA 1 cut(s) 547
Cac8I GCNNGC 5 cut(s) 128, 138, 195, 430, 631
CciI TCATGA 2 cut(s) 325, 466
CfoI GCGC 2 cut(s) 199, 586
CseI GACGC 1 cut(s) 217
Csp6I GTAC 2 cut(s) 181, 835
CviAII CATG 6 cut(s) 326, 455, 467, 511, 554, 740
CviQI GTAC 2 cut(s) 181, 835
DdeI CTNAG 1 cut(s) 391
DpnI GATC 4 cut(s) 239, 414, 453, 694
DpnII GATC 4 cut(s) 237, 412, 451, 692
EaeI YGGCCR 3 cut(s) 138, 159, 616
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Ecl136II GAGCTC 2 cut(s) 223, 490
Eco130I CCWWGG 1 cut(s) 576
Eco24I GRGCYC 3 cut(s) 225, 325, 492
Eco31I GGTCTC 1 cut(s) 704
Eco53kI GAGCTC 2 cut(s) 223, 490
Eco57I CTGAAG 1 cut(s) 79
Eco88I CYCGRG 2 cut(s) 113, 218
EcoICRI GAGCTC 2 cut(s) 223, 490
EcoRII CCWGG 1 cut(s) 558
EcoT14I CCWWGG 1 cut(s) 576
EcoT38I GRGCYC 3 cut(s) 225, 325, 492
ErhI CCWWGG 1 cut(s) 576
FaeI CATG 6 cut(s) 329, 458, 470, 514, 557, 743
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FaqI GGGAC 1 cut(s) 757
FatI CATG 6 cut(s) 325, 454, 466, 510, 553, 739
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 5 cut(s) 248, 426, 443, 708, 822
FokI GGATG 2 cut(s) 363, 775
FriOI GRGCYC 3 cut(s) 225, 325, 492
Fsp4HI GCNGC 5 cut(s) 248, 426, 443, 708, 822
FspBI CTAG 3 cut(s) 429, 435, 750
GlaI GCGC 2 cut(s) 198, 585
GluI GCNGC 5 cut(s) 248, 426, 443, 708, 822
GsaI CCCAGC 1 cut(s) 646
GsuI CTGGAG 3 cut(s) 104, 272, 302
HaeIII GGCC 4 cut(s) 140, 161, 558, 618
HapII CCGG 1 cut(s) 158
HgaI GACGC 1 cut(s) 217
HhaI GCGC 2 cut(s) 199, 586
Hin1II CATG 6 cut(s) 329, 458, 470, 514, 557, 743
Hin6I GCGC 2 cut(s) 197, 584
HinP1I GCGC 2 cut(s) 197, 584
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HindIII AAGCTT 2 cut(s) 77, 91
HinfI GANTC 2 cut(s) 153, 669
HpaII CCGG 1 cut(s) 158
HphI GGTGA 3 cut(s) 380, 761, 800
Hpy166II GTNNAC 3 cut(s) 573, 769, 808
Hpy188I TCNGA 1 cut(s) 152
Hpy188III TCNNGA 6 cut(s) 83, 326, 416, 467, 546, 728
Hpy8I GTNNAC 3 cut(s) 573, 769, 808
Hpy99I CGWCG 1 cut(s) 759
HpyAV CCTTC 1 cut(s) 725
HpyCH4III ACNGT 2 cut(s) 333, 787
HpyCH4IV ACGT 1 cut(s) 757
HpyCH4V TGCA 4 cut(s) 247, 260, 442, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 544, 639
HpyF3I CTNAG 1 cut(s) 391
HpySE526I ACGT 1 cut(s) 757
Hsp92II CATG 6 cut(s) 329, 458, 470, 514, 557, 743
HspAI GCGC 2 cut(s) 197, 584
KpnI GGTACC 1 cut(s) 184
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 4 cut(s) 237, 412, 451, 692
LmnI GCTCC 5 cut(s) 104, 135, 153, 487, 597
Lsp1109I GCAGC 4 cut(s) 259, 412, 454, 719
LweI GCATC 2 cut(s) 542, 579
MaeI CTAG 3 cut(s) 429, 435, 750
MaeII ACGT 1 cut(s) 757
MalI GATC 4 cut(s) 239, 414, 453, 694
MboI GATC 4 cut(s) 237, 412, 451, 692
MboII GAAGA 2 cut(s) 217, 515
MflI RGATCY 1 cut(s) 692
MhlI GDGCHC 3 cut(s) 225, 325, 492
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 1 cut(s) 35
MluNI TGGCCA 1 cut(s) 140
MmeI TCCRAC 3 cut(s) 126, 587, 773
Mox20I TGGCCA 1 cut(s) 140
MroXI GAANNNNTTC 2 cut(s) 35, 735
MscI TGGCCA 1 cut(s) 140
MseI TTAA 4 cut(s) 303, 314, 462, 474
Msp20I TGGCCA 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 250
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 2 cut(s) 158, 560
MvaI CCWGG 1 cut(s) 560
MvnI CGCG 3 cut(s) 199, 547, 584
MwoI GCNNNNNNNGC 2 cut(s) 544, 639
NciI CCSGG 1 cut(s) 158
NdeII GATC 4 cut(s) 237, 412, 451, 692
NheI GCTAGC 1 cut(s) 428
NlaIII CATG 6 cut(s) 329, 458, 470, 514, 557, 743
NlaIV GGNNCC 1 cut(s) 182
NmeAIII GCCGAG 1 cut(s) 204
NruI TCGCGA 1 cut(s) 547
NspI RCATGY 1 cut(s) 514
PaeR7I CTCGAG 2 cut(s) 113, 218
PagI TCATGA 2 cut(s) 325, 466
PdmI GAANNNNTTC 2 cut(s) 35, 735
PfeI GAWTC 2 cut(s) 153, 669
PflMI CCANNNNNTGG 1 cut(s) 817
PkrI GCNGC 5 cut(s) 249, 427, 444, 709, 823
Psp124BI GAGCTC 2 cut(s) 225, 492
Psp6I CCWGG 1 cut(s) 558
PspFI CCCAGC 1 cut(s) 642
PspGI CCWGG 1 cut(s) 558
PspN4I GGNNCC 1 cut(s) 182
PspXI VCTCGAGB 2 cut(s) 113, 218
PsuI RGATCY 1 cut(s) 692
PvuII CAGCTG 1 cut(s) 250
RruI TCGCGA 1 cut(s) 547
RsaI GTAC 2 cut(s) 182, 836
RsaNI GTAC 2 cut(s) 181, 835
SacI GAGCTC 2 cut(s) 225, 492
SaqAI TTAA 4 cut(s) 303, 314, 462, 474
SatI GCNGC 5 cut(s) 248, 426, 443, 708, 822
Sau3AI GATC 4 cut(s) 237, 412, 451, 692
ScrFI CCNGG 2 cut(s) 158, 560
SduI GDGCHC 3 cut(s) 225, 325, 492
SfaNI GCATC 2 cut(s) 542, 579
Sfr274I CTCGAG 2 cut(s) 113, 218
SlaI CTCGAG 2 cut(s) 113, 218
SmlI CTYRAG 2 cut(s) 113, 218
SmoI CTYRAG 2 cut(s) 113, 218
Sse9I AATT 1 cut(s) 35
SsiI CCGC 4 cut(s) 124, 199, 266, 821
SspMI CTAG 3 cut(s) 429, 435, 750
SstI GAGCTC 2 cut(s) 225, 492
StyD4I CCNGG 2 cut(s) 156, 558
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 2 cut(s) 333, 787
TaiI ACGT 1 cut(s) 760
TaqI TCGA 2 cut(s) 114, 219
TasI AATT 1 cut(s) 35
TauI GCSGC 1 cut(s) 824
TfiI GAWTC 2 cut(s) 153, 669
Tru1I TTAA 4 cut(s) 303, 314, 462, 474
Tru9I TTAA 4 cut(s) 303, 314, 462, 474
TscAI CASTG 1 cut(s) 399
TseI GCWGC 4 cut(s) 247, 425, 442, 707
TspDTI ATGAA 3 cut(s) 342, 728, 791
TspRI CASTG 1 cut(s) 399
Van91I CCANNNNNTGG 1 cut(s) 817
XceI RCATGY 1 cut(s) 514
XhoI CTCGAG 2 cut(s) 113, 218
XmnI GAANNNNTTC 2 cut(s) 35, 735
XspI CTAG 3 cut(s) 429, 435, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.