Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013914

Physical Location & Seq

Genomic Coordinates Reverse (-)

22253986 .. 22255663

Gene Structure 1678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAGAGTTCAATGAACAATGCCTTCATTATGAGCAAACATGAAACGGCCATGTTTACAGACGACCAAAATCCAGAAGAAAGTAGCTGGACGATGTACTTTGAGGATTTCTTCGAGGCTTCTTCAAGCATAGTTGACGTCGGAGATTTCAGCTCTTCCTCTGTCTCCGACGCAGCGTCATTCGTGGCCACTAAGAAGACCCTCAACGTGTCGAAGCAAGAAGGATCTAATTTGGACATCAAGAGGACAAGAAATAGAGAGATTCCTTTTGGCCGTCATCATGATCTTGAAGACACTGCCTCTTCTCCTTCTGGTAGCCCTAACGTCTATAGCATGATGAACCTACAAGACAACAACACTAGACACGGGGGTGGTATTGTGGGTGATGATGAGAAAAGAGTGAGTGCAGTGCCAAACCAAGGTGGACTACCAATAGACTTGAAGAAAAAAGGGCTTTGTTTAGTTCCTTTGTCTATGGTCACCAATTTTCTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009825 GO:0009987 GO:0016049 GO:0040007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.06

Weight (kDa)

4.89

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54790
fragaria_vesca	FvH4_3g22010 FvH4_3g22010
malus_domestica	MD03G1209200.v1.1 MD11G1224000.v1.1
prunus_persica	Prupe.4G205800_v2.0.a1 Prupe.4G205800_v2.0.a1
pyrus_communis	pycom03g15810 pycom11g19760
rosa_laevigata	RLG00000033818
rosa_roxburghii	Rroxscaffold_1G00043060
rosa_rugosa	Rorug05G0168200 Rorug05G0168200
rosa_samantha	Rh5BG259500 Rh5CG292500 Rh5DG269400
rosa_wichuraiana	Rw5G023840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
AclWI	GGATC	1 cut(s)	232
AcoI	YGGCCR	3 cut(s)	48, 186, 271
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	419
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	4 cut(s)	12, 126, 290, 442
AhdI	GACNNNNNGTC	1 cut(s)	175
AleI	CACNNNNGTG	1 cut(s)	369
AluBI	AGCT	2 cut(s)	87, 153
AluI	AGCT	2 cut(s)	87, 153
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	3 cut(s)	48, 186, 271
ApeKI	GCWGC	1 cut(s)	173
AsuHPI	GGTGA	2 cut(s)	395, 472
BalI	TGGCCA	1 cut(s)	188
BbsI	GAAGAC	2 cut(s)	203, 297
BbvI	GCAGC	1 cut(s)	185
BceAI	ACGGC	2 cut(s)	63, 258
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	328
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
BmeRI	GACNNNNNGTC	1 cut(s)	175
BpiI	GAAGAC	2 cut(s)	203, 297
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	418
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseXI	GCAGC	1 cut(s)	185
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	3 cut(s)	50, 188, 273
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmAI	GTCTC	1 cut(s)	169
BsnI	GGCC	3 cut(s)	50, 188, 273
Bsp143I	GATC	2 cut(s)	224, 283
BspANI	GGCC	3 cut(s)	50, 188, 273
BspHI	TCATGA	1 cut(s)	280
BspPI	GGATC	1 cut(s)	232
BspQI	GCTCTTC	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	2 cut(s)	224, 283
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	418
Bst6I	CTCTTC	2 cut(s)	160, 307
BstACI	GRCGYC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	192
BstEII	GGTNACC	1 cut(s)	478
BstKTI	GATC	2 cut(s)	227, 286
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	2 cut(s)	224, 283
BstPI	GGTNACC	1 cut(s)	478
BstSFI	CTRYAG	1 cut(s)	328
BstV1I	GCAGC	1 cut(s)	185
BstV2I	GAAGAC	2 cut(s)	203, 297
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
BsuRI	GGCC	3 cut(s)	50, 188, 273
BtsI	GCAGTG	2 cut(s)	294, 414
BtsIMutI	CAGTG	2 cut(s)	294, 414
CciI	TCATGA	1 cut(s)	280
CseI	GACGC	2 cut(s)	165, 179
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	4 cut(s)	41, 52, 281, 334
CviJI	RGCY	8 cut(s)	50, 87, 119, 153, 188, 273, 318, 454
CviKI_1	RGCY	8 cut(s)	50, 87, 119, 153, 188, 273, 318, 454
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	2 cut(s)	226, 285
DpnII	GATC	2 cut(s)	224, 283
DriI	GACNNNNNGTC	1 cut(s)	175
EaeI	YGGCCR	3 cut(s)	48, 186, 271
Eam1104I	CTCTTC	2 cut(s)	160, 307
Eam1105I	GACNNNNNGTC	1 cut(s)	175
EarI	CTCTTC	2 cut(s)	160, 307
Eco130I	CCWWGG	1 cut(s)	418
Eco91I	GGTNACC	1 cut(s)	478
EcoO65I	GGTNACC	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	4 cut(s)	44, 55, 284, 337
FaiI	YATR	8 cut(s)	32, 42, 53, 131, 282, 330, 335, 476
FatI	CATG	4 cut(s)	40, 51, 280, 333
Fnu4HI	GCNGC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	1 cut(s)	174
HaeIII	GGCC	3 cut(s)	50, 188, 273
HgaI	GACGC	2 cut(s)	165, 179
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	4 cut(s)	44, 55, 284, 337
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	1 cut(s)	262
HphI	GGTGA	2 cut(s)	395, 472
Hpy166II	GTNNAC	3 cut(s)	57, 136, 425
Hpy188I	TCNGA	2 cut(s)	143, 169
Hpy188III	TCNNGA	4 cut(s)	74, 241, 281, 287
Hpy8I	GTNNAC	3 cut(s)	57, 136, 425
Hpy99I	CGWCG	2 cut(s)	143, 173
HpyAV	CCTTC	3 cut(s)	34, 215, 318
HpyCH4IV	ACGT	3 cut(s)	138, 207, 324
HpyCH4V	TGCA	1 cut(s)	407
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	3 cut(s)	138, 207, 324
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	4 cut(s)	44, 55, 284, 337
Kzo9I	GATC	2 cut(s)	224, 283
LguI	GCTCTTC	1 cut(s)	160
LpnPI	CCDG	3 cut(s)	73, 87, 297
Lsp1109I	GCAGC	1 cut(s)	185
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	3 cut(s)	138, 207, 324
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	2 cut(s)	226, 285
MboI	GATC	2 cut(s)	224, 283
MboII	GAAGA	8 cut(s)	89, 103, 114, 147, 208, 294, 302, 454
MflI	RGATCY	1 cut(s)	224
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	2 cut(s)	229, 484
MluNI	TGGCCA	1 cut(s)	188
MmeI	TCCRAC	2 cut(s)	121, 192
MnlI	CCTC	6 cut(s)	97, 109, 169, 212, 237, 310
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	188
NdeII	GATC	2 cut(s)	224, 283
NlaIII	CATG	4 cut(s)	44, 55, 284, 337
NmuCI	GTSAC	1 cut(s)	478
OliI	CACNNNNGTG	1 cut(s)	369
PagI	TCATGA	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	175
PspEI	GGTNACC	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	224
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	369
SapI	GCTCTTC	1 cut(s)	160
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	224, 283
SetI	ASST	7 cut(s)	89, 141, 155, 210, 327, 345, 424
SfcI	CTRYAG	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	369
Sse9I	AATT	2 cut(s)	229, 484
SspMI	CTAG	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	418
TaiI	ACGT	3 cut(s)	141, 210, 327
TaqI	TCGA	2 cut(s)	114, 212
TasI	AATT	2 cut(s)	229, 484
TatI	WGTACW	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	262
TscAI	CASTG	2 cut(s)	301, 414
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	4 cut(s)	16, 29, 57, 353
TspRI	CASTG	2 cut(s)	301, 414
XspI	CTAG	1 cut(s)	360
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.