Rh5DG269400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0013914
Physical Location & Seq
Reverse (-)
32638633 .. 32639967
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG269400.1

Sequence Viewer

Length: 534 bp
ATGGAAGACTCGCTGAACTCTATGATGGAAAAAGCTCGTTCTTCTTCTGAGTCGCCTGAGGAGAGTAGTTGGACCATGTACTTGGAAGATTTCTTGACAAACAGTCATCATCACGACGATCACCAGCACAGTTCATCTTTCTCCTCCGGGTACGAAAACCATTCCATAGTCTCTGATGCTGCTTCTTCGATCAGCAAAAATTTAAGTAATATCTGTAACGAAGAAGTTTTAGGGTTTAGCAACAGATCATCATCCAGCTGCATCATCAAAAGAAAAGCCAAAAAAGCTTTACTTCATGATGATGCCTTGGAGGATACAGCTACTTCTCCTGTAAATAGTCCCAAGGTTTGTAATCTATACCATTCAGCATATATGAAACAAAATCTGCAGAACGATAATACAGACATCATTTCTAAGGTAACAGTACATACAGCGATTAAACACATTCCATTTTCTTCATTGGTTTCCTCATCATTATTGTATTTTACTTATGTGGGGGCAGTAAGTTTATATTTTTCACCTGATGGGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.65

Weight (kDa)

5.74

Isoelectric Point (pI)

60.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54790
fragaria_vesca FvH4_3g22010 FvH4_3g22010
malus_domestica MD03G1209200.v1.1 MD11G1224000.v1.1
prunus_persica Prupe.4G205800_v2.0.a1 Prupe.4G205800_v2.0.a1
pyrus_communis pycom03g15810 pycom11g19760
rosa_laevigata RLG00000033818
rosa_roxburghii Rroxscaffold_1G00043060
rosa_rugosa Rorug05G0168200 Rorug05G0168200
rosa_samantha Rh5BG259500 Rh5CG292500 Rh5DG269400
rosa_wichuraiana Rw5G023840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 199
AfaI GTAC 3 cut(s) 80, 152, 426
AhdI GACNNNNNGTC 1 cut(s) 102
AluBI AGCT 4 cut(s) 35, 258, 287, 320
AluI AGCT 4 cut(s) 35, 258, 287, 320
Alw26I GTCTC 1 cut(s) 175
ApeKI GCWGC 2 cut(s) 179, 258
ApoI RAATTY 1 cut(s) 199
AspLEI GCGC 1 cut(s) 531
AspS9I GGNCC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 113, 510
AvaII GGWCC 1 cut(s) 72
AxyI CCTNAGG 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 166, 245
BccI CCATC 2 cut(s) 19, 518
BciVI GTATCC 1 cut(s) 307
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 175
BfmI CTRYAG 1 cut(s) 386
BfoI RGCGCY 1 cut(s) 532
BfuI GTATCC 1 cut(s) 307
BisI GCNGC 2 cut(s) 180, 259
BlsI GCNGC 2 cut(s) 181, 260
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 1 cut(s) 72
BmeRI GACNNNNNGTC 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 3 cut(s) 166, 270, 292
BpiI GAAGAC 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 148
BsaBI GATNNNNATC 1 cut(s) 250
BsaJI CCNNGG 2 cut(s) 306, 342
Bse21I CCTNAGG 1 cut(s) 57
Bse8I GATNNNNATC 1 cut(s) 250
BseDI CCNNGG 2 cut(s) 306, 342
BseGI GGATG 1 cut(s) 251
BseJI GATNNNNATC 1 cut(s) 250
BseMII CTCAG 2 cut(s) 39, 48
BseRI GAGGAG 2 cut(s) 74, 133
BseXI GCAGC 2 cut(s) 166, 245
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 324
BsmAI GTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 324
Bsp143I GATC 3 cut(s) 118, 189, 245
BspCNI CTCAG 2 cut(s) 40, 49
BspHI TCATGA 1 cut(s) 295
BspMAI CTGCAG 1 cut(s) 390
BssECI CCNNGG 2 cut(s) 306, 342
BssMI GATC 3 cut(s) 118, 189, 245
BssT1I CCWWGG 2 cut(s) 306, 342
Bst4CI ACNGT 3 cut(s) 104, 131, 424
BstDEI CTNAG 3 cut(s) 48, 57, 414
BstF5I GGATG 1 cut(s) 251
BstH2I RGCGCY 1 cut(s) 532
BstHHI GCGC 1 cut(s) 531
BstKTI GATC 3 cut(s) 121, 192, 248
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 3 cut(s) 118, 189, 245
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 146
BstSFI CTRYAG 1 cut(s) 386
BstV1I GCAGC 2 cut(s) 166, 245
BstV2I GAAGAC 1 cut(s) 12
BstXI CCANNNNNNTGG 1 cut(s) 82
Bsu36I CCTNAGG 1 cut(s) 57
BsuI GTATCC 1 cut(s) 307
BtsCI GGATG 1 cut(s) 251
CciI TCATGA 1 cut(s) 295
CfoI GCGC 1 cut(s) 531
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 3 cut(s) 79, 151, 425
CviAII CATG 2 cut(s) 76, 296
CviJI RGCY 5 cut(s) 35, 258, 278, 287, 320
CviKI_1 RGCY 5 cut(s) 35, 258, 278, 287, 320
CviQI GTAC 3 cut(s) 79, 151, 425
DdeI CTNAG 3 cut(s) 48, 57, 414
DpnI GATC 3 cut(s) 120, 191, 247
DpnII GATC 3 cut(s) 118, 189, 245
DriI GACNNNNNGTC 1 cut(s) 102
Eam1105I GACNNNNNGTC 1 cut(s) 102
Eco130I CCWWGG 2 cut(s) 306, 342
Eco47I GGWCC 1 cut(s) 72
Eco81I CCTNAGG 1 cut(s) 57
EcoT14I CCWWGG 2 cut(s) 306, 342
ErhI CCWWGG 2 cut(s) 306, 342
FaeI CATG 2 cut(s) 79, 299
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 1 cut(s) 324
FatI CATG 2 cut(s) 75, 295
Fnu4HI GCNGC 2 cut(s) 180, 259
FokI GGATG 1 cut(s) 238
Fsp4HI GCNGC 2 cut(s) 180, 259
GlaI GCGC 1 cut(s) 530
GluI GCNGC 2 cut(s) 180, 259
HaeII RGCGCY 1 cut(s) 532
HapII CCGG 1 cut(s) 147
HhaI GCGC 1 cut(s) 531
Hin1II CATG 2 cut(s) 79, 299
Hin6I GCGC 1 cut(s) 529
HinP1I GCGC 1 cut(s) 529
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 2 cut(s) 8, 50
HpaII CCGG 1 cut(s) 147
HphI GGTGA 2 cut(s) 113, 510
Hpy188I TCNGA 2 cut(s) 49, 175
Hpy188III TCNNGA 3 cut(s) 94, 113, 296
Hpy99I CGWCG 1 cut(s) 119
HpyCH4III ACNGT 3 cut(s) 104, 131, 424
HpyCH4V TGCA 2 cut(s) 261, 388
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 3 cut(s) 48, 57, 414
Hsp92II CATG 2 cut(s) 79, 299
HspAI GCGC 1 cut(s) 529
Kzo9I GATC 3 cut(s) 118, 189, 245
LpnPI CCDG 5 cut(s) 69, 137, 160, 268, 342
Lsp1109I GCAGC 2 cut(s) 166, 245
LweI GCATC 3 cut(s) 166, 270, 292
MaeIII GTNAC 2 cut(s) 215, 418
MalI GATC 3 cut(s) 120, 191, 247
MboI GATC 3 cut(s) 118, 189, 245
MboII GAAGA 7 cut(s) 17, 33, 36, 98, 177, 233, 447
MluCI AATT 1 cut(s) 199
MlyI GAGTC 2 cut(s) 2, 59
MmeI TCCRAC 1 cut(s) 50
MnlI CCTC 4 cut(s) 52, 154, 304, 478
MseI TTAA 2 cut(s) 203, 438
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 284
NciI CCSGG 1 cut(s) 148
NdeII GATC 3 cut(s) 118, 189, 245
NlaIII CATG 2 cut(s) 79, 299
PagI TCATGA 1 cut(s) 295
PkrI GCNGC 2 cut(s) 181, 260
PleI GAGTC 2 cut(s) 2, 58
PpsI GAGTC 2 cut(s) 2, 58
PspPI GGNCC 1 cut(s) 72
PstI CTGCAG 1 cut(s) 390
PvuII CAGCTG 1 cut(s) 258
RsaI GTAC 3 cut(s) 80, 152, 426
RsaNI GTAC 3 cut(s) 79, 151, 425
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 2 cut(s) 203, 438
SatI GCNGC 2 cut(s) 180, 259
Sau3AI GATC 3 cut(s) 118, 189, 245
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 2 cut(s) 2, 59
ScrFI CCNGG 1 cut(s) 148
SetI ASST 7 cut(s) 37, 260, 289, 322, 348, 420, 523
SfaNI GCATC 3 cut(s) 166, 270, 292
SfcI CTRYAG 1 cut(s) 386
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 1 cut(s) 199
StyD4I CCNGG 1 cut(s) 146
StyI CCWWGG 2 cut(s) 306, 342
TaaI ACNGT 3 cut(s) 104, 131, 424
TaqI TCGA 1 cut(s) 188
TasI AATT 1 cut(s) 199
TatI WGTACW 2 cut(s) 78, 424
Tru1I TTAA 2 cut(s) 203, 438
Tru9I TTAA 2 cut(s) 203, 438
TseI GCWGC 2 cut(s) 179, 258
TspDTI ATGAA 4 cut(s) 123, 284, 389, 447
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.