Prupe.4G205800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013914
Physical Location & Seq
Reverse (-)
12838442 .. 12839747
1306 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G205800.1

Sequence Viewer

Length: 573 bp
ATGGAAGATCATCACTCTATGAACTCTATGATGAGAAAATCTGTGTCTTCTGAAAATACAAGAGCCACTTCTCATGAGTCCCCTGAGGAGAGTAGTTGGACTATGTACTTGGAAGATTTCTTGACAAGCAATAATGATGATGGGGATGATGATGAACGCAGTTCCTCCTCACATGGTTATGAAAACTCTTCCACAATCTCCGATGCTGCTTCTGCGGTTACCAGAAAGTTGAGTGCTATTAATGGAGAAGTTTTAGGGTTCGATAATAGATCGAGTTTCGAATTCGAAAGGAGAAAAACGAAAGAAGATTTGCTTGATGATGCTTTGGAGGATACGGCTAGCTCTCCGGTAAATAGTCCCAAGGTTTTTAATCTAAACCAGTCAGATGTGAGACTAACACAGCAAAACAATAACACAGACATATCTTATACGGAGAAAGGAAGTACTTCTGGGCTGGTAGTAGATGAGAGAAATGAATTGGGCTTTATTGGGAGGGAAAGTGACTGCACAGACCTGAAGAAAAGAGGACTTTGCTTAGTTCCTTTCTCTGTGGTAGCAAACTATTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.13

Weight (kDa)

4.54

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54790
fragaria_vesca FvH4_3g22010 FvH4_3g22010
malus_domestica MD03G1209200.v1.1 MD11G1224000.v1.1
prunus_persica Prupe.4G205800_v2.0.a1 Prupe.4G205800_v2.0.a1
pyrus_communis pycom03g15810 pycom11g19760
rosa_laevigata RLG00000033818
rosa_roxburghii Rroxscaffold_1G00043060
rosa_rugosa Rorug05G0168200 Rorug05G0168200
rosa_samantha Rh5BG259500 Rh5CG292500 Rh5DG269400
rosa_wichuraiana Rw5G023840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 215
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 536
AfaI GTAC 2 cut(s) 107, 445
AluBI AGCT 1 cut(s) 342
AluI AGCT 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 385
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 281
AseI ATTAAT 1 cut(s) 240
Asp700I GAANNNNTTC 1 cut(s) 445
AsuII TTCGAA 2 cut(s) 279, 285
AsuNHI GCTAGC 1 cut(s) 338
AxyI CCTNAGG 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 193
BccI CCATC 1 cut(s) 134
BceAI ACGGC 1 cut(s) 351
BciVI GTATCC 1 cut(s) 325
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 1 cut(s) 339
BfuI GTATCC 1 cut(s) 325
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmcAI AGTACT 1 cut(s) 445
BmsI GCATC 2 cut(s) 193, 310
BmtI GCTAGC 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 39
Bpu14I TTCGAA 2 cut(s) 279, 285
BsaJI CCNNGG 1 cut(s) 360
BsaWI WCCGGW 1 cut(s) 346
BsaXI ACNNNNNCTCC 2 cut(s) 484, 514
Bse1I ACTGG 1 cut(s) 379
Bse21I CCTNAGG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 379
BseRI GAGGAG 2 cut(s) 101, 157
BseXI GCAGC 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 490
BsiSI CCGG 1 cut(s) 347
BslFI GGGAC 2 cut(s) 64, 342
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 2 cut(s) 64, 342
Bsp119I TTCGAA 2 cut(s) 279, 285
Bsp143I GATC 2 cut(s) 7, 269
BspACI CCGC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 76
BspHI TCATGA 1 cut(s) 73
BspOI GCTAGC 1 cut(s) 342
BspT104I TTCGAA 2 cut(s) 279, 285
BsrI ACTGG 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 2 cut(s) 7, 269
BssT1I CCWWGG 1 cut(s) 360
Bst6I CTCTTC 1 cut(s) 193
BstBI TTCGAA 2 cut(s) 279, 285
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 2 cut(s) 84, 535
BstEII GGTNACC 1 cut(s) 217
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 2 cut(s) 10, 272
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 2 cut(s) 7, 269
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstPI GGTNACC 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 84
BsuI GTATCC 1 cut(s) 325
BtsCI GGATG 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 340
CciI TCATGA 1 cut(s) 73
Csp6I GTAC 2 cut(s) 106, 444
CviAII CATG 2 cut(s) 74, 173
CviJI RGCY 5 cut(s) 65, 338, 342, 454, 483
CviKI_1 RGCY 5 cut(s) 65, 338, 342, 454, 483
CviQI GTAC 2 cut(s) 106, 444
DdeI CTNAG 2 cut(s) 84, 535
DpnI GATC 2 cut(s) 9, 271
DpnII GATC 2 cut(s) 7, 269
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 536
Eco81I CCTNAGG 1 cut(s) 84
Eco91I GGTNACC 1 cut(s) 217
EcoO65I GGTNACC 1 cut(s) 217
EcoRI GAATTC 1 cut(s) 281
EcoT14I CCWWGG 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 2 cut(s) 77, 176
FaiI YATR 8 cut(s) 20, 29, 75, 104, 174, 180, 422, 429
FalI AAGNNNNNCTT 4 cut(s) 52, 84, 297, 329
FaqI GGGAC 2 cut(s) 64, 342
FatI CATG 2 cut(s) 73, 172
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 339
GluI GCNGC 1 cut(s) 207
HapII CCGG 1 cut(s) 347
Hin1II CATG 2 cut(s) 77, 176
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 347
Hpy188I TCNGA 3 cut(s) 52, 202, 385
Hpy188III TCNNGA 2 cut(s) 74, 121
HpyCH4V TGCA 1 cut(s) 507
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 2 cut(s) 84, 535
Hsp92II CATG 2 cut(s) 77, 176
Kzo9I GATC 2 cut(s) 7, 269
LpnPI CCDG 7 cut(s) 96, 235, 360, 392, 435, 440, 527
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 2 cut(s) 193, 310
MaeI CTAG 1 cut(s) 339
MaeIII GTNAC 2 cut(s) 217, 500
MalI GATC 2 cut(s) 9, 271
MboI GATC 2 cut(s) 7, 269
MboII GAAGA 6 cut(s) 17, 39, 125, 180, 317, 529
MluCI AATT 2 cut(s) 281, 476
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 6 cut(s) 79, 175, 178, 322, 486, 518
MroXI GAANNNNTTC 1 cut(s) 445
MseI TTAA 2 cut(s) 240, 369
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeII GATC 2 cut(s) 7, 269
NheI GCTAGC 1 cut(s) 338
NlaIII CATG 2 cut(s) 77, 176
NmuCI GTSAC 1 cut(s) 500
NspV TTCGAA 2 cut(s) 279, 285
PagI TCATGA 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 445
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PshBI ATTAAT 1 cut(s) 240
PspEI GGTNACC 1 cut(s) 217
RsaI GTAC 2 cut(s) 107, 445
RsaNI GTAC 2 cut(s) 106, 444
RseI CAYNNNNRTG 1 cut(s) 177
SaqAI TTAA 2 cut(s) 240, 369
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 2 cut(s) 7, 269
ScaI AGTACT 1 cut(s) 445
SchI GAGTC 1 cut(s) 86
SetI ASST 3 cut(s) 344, 366, 516
SfaNI GCATC 2 cut(s) 193, 310
SfuI TTCGAA 2 cut(s) 279, 285
SmiMI CAYNNNNRTG 1 cut(s) 177
Sse9I AATT 2 cut(s) 281, 476
SsiI CCGC 1 cut(s) 215
SspMI CTAG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 360
TaqI TCGA 4 cut(s) 261, 272, 279, 285
TasI AATT 2 cut(s) 281, 476
TatI WGTACW 2 cut(s) 105, 443
Tru1I TTAA 2 cut(s) 240, 369
Tru9I TTAA 2 cut(s) 240, 369
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 4 cut(s) 35, 168, 195, 489
TspGWI ACGGA 1 cut(s) 446
VspI ATTAAT 1 cut(s) 240
XapI RAATTY 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 445
XspI CTAG 1 cut(s) 339
ZrmI AGTACT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.