Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013914

Physical Location & Seq

Genomic Coordinates Reverse (-)

15087590 .. 15088907

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAACACTCGATGAACTCTATAATGGAAAAAGCTCGTTCTTCTTCTGAGTCTGAGGAAAGTAGTTGGACCATGTACTTGGAAGATTTCTTGACAAGCAGTCATCATCACGATGATCAACACCACAGTTCATCTTTCTCCTCCGGGTACGAAAACTCCATAGTCTCTGATGCTGCTTCTTCATTCAGCAATTTAGGTAATAACTGTAACGAAGAAGTCTTAGGGTTTAGCAACAGATCATCATCACCCAGCTGCATCATCAAAAGAAAAGCCAAAAAAGCTTTGCTTCATGATGATGCCTTGGAGGATACAGCTACTTCTCCTGCAAACAGTCCCAAGGTTTGTAATCTATACCATTCAGGAAATATGAAACAAAATCTGCAGAGAGATAATAGAGACATCATATCTAAGGAGAAAGGAAGTACTTCTGGCAATGTAGACGGGACAAGTCCTACTGAATTGGATTTTAATGGGAGGGAAAGTGACTGCACAGGGCTGAAGAAAAAAGGACTTTGCTTAGTTCCGTTTTCTATGGTCGCCAATTACTTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.18

Weight (kDa)

5.57

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54790
fragaria_vesca	FvH4_3g22010 FvH4_3g22010
malus_domestica	MD03G1209200.v1.1 MD11G1224000.v1.1
prunus_persica	Prupe.4G205800_v2.0.a1 Prupe.4G205800_v2.0.a1
pyrus_communis	pycom03g15810 pycom11g19760
rosa_laevigata	RLG00000033818
rosa_roxburghii	Rroxscaffold_1G00043060
rosa_rugosa	Rorug05G0168200 Rorug05G0168200
rosa_samantha	Rh5BG259500 Rh5CG292500 Rh5DG269400
rosa_wichuraiana	Rw5G023840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	438
AcuI	CTGAAG	1 cut(s)	518
AfaI	GTAC	3 cut(s)	77, 149, 424
AhdI	GACNNNNNGTC	1 cut(s)	99
AluBI	AGCT	4 cut(s)	35, 252, 281, 314
AluI	AGCT	4 cut(s)	35, 252, 281, 314
Alw26I	GTCTC	2 cut(s)	169, 390
ApeKI	GCWGC	2 cut(s)	173, 252
Asp700I	GAANNNNTTC	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	69
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	160, 239
BciVI	GTATCC	1 cut(s)	301
BclI	TGATCA	1 cut(s)	115
BcnI	CCSGG	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	169, 390
BfmI	CTRYAG	1 cut(s)	380
BfuI	GTATCC	1 cut(s)	301
BisI	GCNGC	2 cut(s)	174, 253
BlsI	GCNGC	2 cut(s)	175, 254
BmcAI	AGTACT	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	69
BmeRI	GACNNNNNGTC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	3 cut(s)	160, 264, 286
BpuMI	CCSGG	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	241
BsaJI	CCNNGG	2 cut(s)	300, 336
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 466, 496
Bse3DI	GCAATG	1 cut(s)	439
Bse8I	GATNNNNATC	1 cut(s)	241
BseDI	CCNNGG	2 cut(s)	300, 336
BseJI	GATNNNNATC	1 cut(s)	241
BseMI	GCAATG	1 cut(s)	439
BseMII	CTCAG	2 cut(s)	39, 45
BseRI	GAGGAG	1 cut(s)	130
BseXI	GCAGC	2 cut(s)	160, 239
BseYI	CCCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	472
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	2 cut(s)	318, 457
BsmAI	GTCTC	2 cut(s)	169, 390
BsmFI	GGGAC	2 cut(s)	318, 457
Bsp143I	GATC	2 cut(s)	115, 236
BspCNI	CTCAG	2 cut(s)	40, 46
BspHI	TCATGA	1 cut(s)	289
BspMAI	CTGCAG	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	439
BssECI	CCNNGG	2 cut(s)	300, 336
BssMI	GATC	2 cut(s)	115, 236
BssT1I	CCWWGG	2 cut(s)	300, 336
Bst4CI	ACNGT	3 cut(s)	128, 206, 332
BstDEI	CTNAG	5 cut(s)	48, 54, 220, 408, 517
BstKTI	GATC	2 cut(s)	118, 239
BstMAI	GTCTC	2 cut(s)	169, 390
BstMBI	GATC	2 cut(s)	115, 236
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	143
BstSFI	CTRYAG	1 cut(s)	380
BstV1I	GCAGC	2 cut(s)	160, 239
BstXI	CCANNNNNNTGG	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	301
CciI	TCATGA	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	69
Csp6I	GTAC	3 cut(s)	76, 148, 423
CviAII	CATG	2 cut(s)	73, 290
CviJI	RGCY	6 cut(s)	35, 252, 272, 281, 314, 496
CviKI_1	RGCY	6 cut(s)	35, 252, 272, 281, 314, 496
CviQI	GTAC	3 cut(s)	76, 148, 423
DdeI	CTNAG	5 cut(s)	48, 54, 220, 408, 517
DpnI	GATC	2 cut(s)	117, 238
DpnII	GATC	2 cut(s)	115, 236
DriI	GACNNNNNGTC	1 cut(s)	99
Eam1105I	GACNNNNNGTC	1 cut(s)	99
Eco130I	CCWWGG	2 cut(s)	300, 336
Eco47I	GGWCC	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	518
EcoT14I	CCWWGG	2 cut(s)	300, 336
ErhI	CCWWGG	2 cut(s)	300, 336
FaeI	CATG	2 cut(s)	76, 293
FaiI	YATR	8 cut(s)	23, 74, 161, 291, 352, 368, 404, 533
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	2 cut(s)	318, 457
FatI	CATG	2 cut(s)	72, 289
FbaI	TGATCA	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	2 cut(s)	174, 253
Fsp4HI	GCNGC	2 cut(s)	174, 253
GluI	GCNGC	2 cut(s)	174, 253
GsaI	CCCAGC	1 cut(s)	252
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	2 cut(s)	76, 293
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	1 cut(s)	50
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	1 cut(s)	237
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	3 cut(s)	49, 55, 169
Hpy188III	TCNNGA	4 cut(s)	91, 110, 290, 360
Hpy8I	GTNNAC	1 cut(s)	439
HpyCH4III	ACNGT	3 cut(s)	128, 206, 332
HpyCH4V	TGCA	4 cut(s)	255, 326, 382, 489
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	5 cut(s)	48, 54, 220, 408, 517
Hsp92II	CATG	2 cut(s)	76, 293
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	115, 236
LpnPI	CCDG	6 cut(s)	157, 262, 336, 345, 414, 477
Lsp1109I	GCAGC	2 cut(s)	160, 239
LweI	GCATC	3 cut(s)	160, 264, 286
MaeIII	GTNAC	2 cut(s)	206, 482
MalI	GATC	2 cut(s)	117, 238
MboI	GATC	2 cut(s)	115, 236
MboII	GAAGA	6 cut(s)	33, 36, 95, 171, 224, 511
MluCI	AATT	3 cut(s)	190, 458, 541
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	4 cut(s)	49, 151, 298, 468
MroXI	GAANNNNTTC	1 cut(s)	424
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	2 cut(s)	111, 294
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	278
NciI	CCSGG	1 cut(s)	145
NdeII	GATC	2 cut(s)	115, 236
NlaIII	CATG	2 cut(s)	76, 293
NmuCI	GTSAC	1 cut(s)	482
PagI	TCATGA	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	424
PkrI	GCNGC	2 cut(s)	175, 254
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	248
PspPI	GGNCC	1 cut(s)	69
PstI	CTGCAG	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	252
RsaI	GTAC	3 cut(s)	77, 149, 424
RsaNI	GTAC	3 cut(s)	76, 148, 423
RseI	CAYNNNNRTG	2 cut(s)	111, 294
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	2 cut(s)	174, 253
Sau3AI	GATC	2 cut(s)	115, 236
Sau96I	GGNCC	1 cut(s)	69
ScaI	AGTACT	1 cut(s)	424
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	145
SetI	ASST	6 cut(s)	37, 199, 254, 283, 316, 342
SfaNI	GCATC	3 cut(s)	160, 264, 286
SfcI	CTRYAG	1 cut(s)	380
SinI	GGWCC	1 cut(s)	69
SmiMI	CAYNNNNRTG	2 cut(s)	111, 294
Sse9I	AATT	3 cut(s)	190, 458, 541
StyD4I	CCNGG	1 cut(s)	143
StyI	CCWWGG	2 cut(s)	300, 336
TaaI	ACNGT	3 cut(s)	128, 206, 332
TaqI	TCGA	1 cut(s)	11
TasI	AATT	3 cut(s)	190, 458, 541
TatI	WGTACW	2 cut(s)	75, 422
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	2 cut(s)	173, 252
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	5 cut(s)	29, 120, 171, 278, 383
TspGWI	ACGGA	1 cut(s)	513
VpaK11BI	GGWCC	1 cut(s)	69
XmiI	GTMKAC	1 cut(s)	438
XmnI	GAANNNNTTC	1 cut(s)	424
ZrmI	AGTACT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.