Rroxscaffold_1G00043060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013914
Physical Location & Seq
Forward (+)
61370158 .. 61371500
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00043060.1

Sequence Viewer

Length: 489 bp
ATGGAAGACTCGCTGAACTCTATGATGGAAAAAGCTCGTTCTTCTTCTGAGTCACCTGAGGAGAGTAGTTGGACCATGTACTTGGAAGATTTCTTGACAAACAGTCATCATCACGACGATCAACAGCACAGTTCATCTTTCTCCTCCGGGTACGAAAACCATTCCATAGTCTCTGATGCTGCTTCTTCGATCAGCAAAAATTTAAGTAATATCTGTAACGAAGAAGCTTTAGGGTTTAGCAACAGATCATCACCCAGCTGCATCATCAAAAGAAAATCCAAAAAAGCTTTACTTCATGATGATGCCTTGGAGGATACAGCTACTTCTCCTGTAAATAGTCCCAAGGAGAAAGGAAGTACTTCTGGCAATGTAGATGCGACAAGTCCTACTGAATTGGATTTTAATAGGAGGGAAAGTGACTGCACAGAGCTGAAGAAAAAAGGACTTTGCTTAGTTCCATTTTCTATGGTCGCCAACTACTTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.82

Weight (kDa)

5.07

Isoelectric Point (pI)

67.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54790
fragaria_vesca FvH4_3g22010 FvH4_3g22010
malus_domestica MD03G1209200.v1.1 MD11G1224000.v1.1
prunus_persica Prupe.4G205800_v2.0.a1 Prupe.4G205800_v2.0.a1
pyrus_communis pycom03g15810 pycom11g19760
rosa_laevigata RLG00000033818
rosa_roxburghii Rroxscaffold_1G00043060
rosa_rugosa Rorug05G0168200 Rorug05G0168200
rosa_samantha Rh5BG259500 Rh5CG292500 Rh5DG269400
rosa_wichuraiana Rw5G023840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 452
AfaI GTAC 3 cut(s) 80, 152, 358
AhdI GACNNNNNGTC 1 cut(s) 102
AluBI AGCT 6 cut(s) 35, 227, 258, 287, 320, 430
AluI AGCT 6 cut(s) 35, 227, 258, 287, 320, 430
Alw26I GTCTC 1 cut(s) 175
ApeKI GCWGC 2 cut(s) 179, 258
ApoI RAATTY 1 cut(s) 199
Asp700I GAANNNNTTC 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 45, 243
AvaII GGWCC 1 cut(s) 72
AxyI CCTNAGG 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 166, 245
BccI CCATC 1 cut(s) 19
BciVI GTATCC 1 cut(s) 307
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 175
BfuI GTATCC 1 cut(s) 307
BisI GCNGC 2 cut(s) 180, 259
BlsI GCNGC 2 cut(s) 181, 260
BmcAI AGTACT 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 1 cut(s) 72
BmeRI GACNNNNNGTC 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 4 cut(s) 166, 270, 292, 364
BpiI GAAGAC 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 148
BsaJI CCNNGG 2 cut(s) 306, 342
BsaXI ACNNNNNCTCC 2 cut(s) 400, 430
Bse21I CCTNAGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 373
BseDI CCNNGG 2 cut(s) 306, 342
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 2 cut(s) 39, 48
BseRI GAGGAG 2 cut(s) 74, 133
BseXI GCAGC 2 cut(s) 166, 245
BseYI CCCAGC 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 406
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 324
BsmAI GTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 324
Bsp143I GATC 3 cut(s) 118, 189, 245
BspCNI CTCAG 2 cut(s) 40, 49
BspHI TCATGA 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 373
BssECI CCNNGG 2 cut(s) 306, 342
BssMI GATC 3 cut(s) 118, 189, 245
BssT1I CCWWGG 2 cut(s) 306, 342
Bst4CI ACNGT 2 cut(s) 104, 131
BstDEI CTNAG 3 cut(s) 48, 57, 451
BstKTI GATC 3 cut(s) 121, 192, 248
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 3 cut(s) 118, 189, 245
BstSCI CCNGG 1 cut(s) 146
BstV1I GCAGC 2 cut(s) 166, 245
BstV2I GAAGAC 1 cut(s) 12
BstXI CCANNNNNNTGG 1 cut(s) 82
Bsu36I CCTNAGG 1 cut(s) 57
BsuI GTATCC 1 cut(s) 307
CciI TCATGA 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 3 cut(s) 79, 151, 357
CviAII CATG 2 cut(s) 76, 296
CviJI RGCY 6 cut(s) 35, 227, 258, 287, 320, 430
CviKI_1 RGCY 6 cut(s) 35, 227, 258, 287, 320, 430
CviQI GTAC 3 cut(s) 79, 151, 357
DdeI CTNAG 3 cut(s) 48, 57, 451
DpnI GATC 3 cut(s) 120, 191, 247
DpnII GATC 3 cut(s) 118, 189, 245
DriI GACNNNNNGTC 1 cut(s) 102
Eam1105I GACNNNNNGTC 1 cut(s) 102
Eco130I CCWWGG 2 cut(s) 306, 342
Eco47I GGWCC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 452
Eco81I CCTNAGG 1 cut(s) 57
EcoT14I CCWWGG 2 cut(s) 306, 342
ErhI CCWWGG 2 cut(s) 306, 342
FaeI CATG 2 cut(s) 79, 299
FaiI YATR 5 cut(s) 23, 77, 167, 297, 467
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 1 cut(s) 324
FatI CATG 2 cut(s) 75, 295
Fnu4HI GCNGC 2 cut(s) 180, 259
Fsp4HI GCNGC 2 cut(s) 180, 259
GluI GCNGC 2 cut(s) 180, 259
GsaI CCCAGC 1 cut(s) 258
HapII CCGG 1 cut(s) 147
Hin1II CATG 2 cut(s) 79, 299
HindIII AAGCTT 2 cut(s) 225, 285
HinfI GANTC 2 cut(s) 8, 50
HpaII CCGG 1 cut(s) 147
HphI GGTGA 2 cut(s) 45, 243
Hpy188I TCNGA 2 cut(s) 49, 175
Hpy188III TCNNGA 3 cut(s) 94, 113, 296
Hpy99I CGWCG 1 cut(s) 119
HpyCH4III ACNGT 2 cut(s) 104, 131
HpyCH4V TGCA 2 cut(s) 261, 423
HpyF3I CTNAG 3 cut(s) 48, 57, 451
Hsp92II CATG 2 cut(s) 79, 299
Kzo9I GATC 3 cut(s) 118, 189, 245
LpnPI CCDG 5 cut(s) 69, 160, 268, 342, 348
Lsp1109I GCAGC 2 cut(s) 166, 245
LweI GCATC 4 cut(s) 166, 270, 292, 364
MaeIII GTNAC 3 cut(s) 51, 215, 416
MalI GATC 3 cut(s) 120, 191, 247
MboI GATC 3 cut(s) 118, 189, 245
MboII GAAGA 7 cut(s) 17, 33, 36, 98, 177, 233, 445
MluCI AATT 2 cut(s) 199, 392
MlyI GAGTC 2 cut(s) 2, 59
MmeI TCCRAC 1 cut(s) 50
MnlI CCTC 4 cut(s) 52, 154, 304, 402
MroXI GAANNNNTTC 1 cut(s) 358
MseI TTAA 2 cut(s) 203, 402
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 148
NciI CCSGG 1 cut(s) 148
NdeII GATC 3 cut(s) 118, 189, 245
NlaIII CATG 2 cut(s) 79, 299
NmuCI GTSAC 2 cut(s) 51, 416
PagI TCATGA 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 358
PkrI GCNGC 2 cut(s) 181, 260
PleI GAGTC 2 cut(s) 2, 58
PpsI GAGTC 2 cut(s) 2, 58
PspFI CCCAGC 1 cut(s) 254
PspPI GGNCC 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 258
RsaI GTAC 3 cut(s) 80, 152, 358
RsaNI GTAC 3 cut(s) 79, 151, 357
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 2 cut(s) 203, 402
SatI GCNGC 2 cut(s) 180, 259
Sau3AI GATC 3 cut(s) 118, 189, 245
Sau96I GGNCC 1 cut(s) 72
ScaI AGTACT 1 cut(s) 358
SchI GAGTC 2 cut(s) 2, 59
ScrFI CCNGG 1 cut(s) 148
SetI ASST 7 cut(s) 37, 58, 229, 260, 289, 322, 432
SfaNI GCATC 4 cut(s) 166, 270, 292, 364
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 2 cut(s) 199, 392
StyD4I CCNGG 1 cut(s) 146
StyI CCWWGG 2 cut(s) 306, 342
TaaI ACNGT 2 cut(s) 104, 131
TaqI TCGA 1 cut(s) 188
TasI AATT 2 cut(s) 199, 392
TatI WGTACW 2 cut(s) 78, 356
Tru1I TTAA 2 cut(s) 203, 402
Tru9I TTAA 2 cut(s) 203, 402
TseFI GTSAC 2 cut(s) 51, 416
TseI GCWGC 2 cut(s) 179, 258
Tsp45I GTSAC 2 cut(s) 51, 416
TspDTI ATGAA 2 cut(s) 123, 284
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 1 cut(s) 199
XmnI GAANNNNTTC 1 cut(s) 358
ZrmI AGTACT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.