Rh5CG292500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0013914
Physical Location & Seq
Reverse (-)
32169769 .. 32170608
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG292500.1

Sequence Viewer

Length: 561 bp
ATGGAAGACTCGCTGAATTCTATGATGGAAAAAGCTCGTTCTTCTTCTGAGTCGCCTGAGGAGAGTAGTTGGACCATGTACTTGGAAGATTTCTTGACAAACAGTCATCATCGCGACGATCAACAGCACAGTTCATCTTTCTCCTCCGGGTACGAAAACCATTCCATAGTCTCTGATGCTGCTTCTTCGATCAGCAAAAATTTAAGTAATATCTGTAACGAAGAAGTTTTAGGGTTTAGCAACAGATCATCACCCAGCTGCATCATCAAAAGAAAAGCCAAAAAAGCTTTACTTCATGATGATGCCTTGGAGGATACAGCTACTTCTCCTGTAAATAGTCCCAAGGTTTGTAATCTATACCATTCAGCAGATATGAAACAAAATCTGCAGAACGATAATAGAGACATCATTTCTAAGGAAAAAGGAAGTACTTCTGGCAATGTAGATGCGACAAGTCCTACTGAATTGGATTTTAATAGGAGGGAAAGTGACTGCACAGAGCTGAAGAAAAAAGGACTTTGCTTAGTTCCATTTTCTATGGTCGCCAACTACTTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.66

Weight (kDa)

5.22

Isoelectric Point (pI)

62.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54790
fragaria_vesca FvH4_3g22010 FvH4_3g22010
malus_domestica MD03G1209200.v1.1 MD11G1224000.v1.1
prunus_persica Prupe.4G205800_v2.0.a1 Prupe.4G205800_v2.0.a1
pyrus_communis pycom03g15810 pycom11g19760
rosa_laevigata RLG00000033818
rosa_roxburghii Rroxscaffold_1G00043060
rosa_rugosa Rorug05G0168200 Rorug05G0168200
rosa_samantha Rh5BG259500 Rh5CG292500 Rh5DG269400
rosa_wichuraiana Rw5G023840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 114
AcsI RAATTY 2 cut(s) 16, 199
AcuI CTGAAG 1 cut(s) 524
AfaI GTAC 3 cut(s) 80, 152, 430
AhdI GACNNNNNGTC 1 cut(s) 102
AluBI AGCT 5 cut(s) 35, 258, 287, 320, 502
AluI AGCT 5 cut(s) 35, 258, 287, 320, 502
Alw26I GTCTC 2 cut(s) 175, 396
ApeKI GCWGC 2 cut(s) 179, 258
ApoI RAATTY 2 cut(s) 16, 199
Asp700I GAANNNNTTC 1 cut(s) 430
AspS9I GGNCC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 243
AvaII GGWCC 1 cut(s) 72
AxyI CCTNAGG 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 166, 245
BccI CCATC 1 cut(s) 19
BciVI GTATCC 1 cut(s) 307
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 175, 396
BfmI CTRYAG 1 cut(s) 386
BfuI GTATCC 1 cut(s) 307
BisI GCNGC 2 cut(s) 180, 259
BlsI GCNGC 2 cut(s) 181, 260
BmcAI AGTACT 1 cut(s) 430
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 1 cut(s) 72
BmeRI GACNNNNNGTC 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 4 cut(s) 166, 270, 292, 436
BpiI GAAGAC 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 148
BsaJI CCNNGG 2 cut(s) 306, 342
BsaXI ACNNNNNCTCC 2 cut(s) 472, 502
Bse21I CCTNAGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 445
BseDI CCNNGG 2 cut(s) 306, 342
BseMI GCAATG 1 cut(s) 445
BseMII CTCAG 2 cut(s) 39, 48
BseRI GAGGAG 2 cut(s) 74, 133
BseXI GCAGC 2 cut(s) 166, 245
BseYI CCCAGC 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 478
Bsh1236I CGCG 1 cut(s) 114
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 324
BsmAI GTCTC 2 cut(s) 175, 396
BsmFI GGGAC 1 cut(s) 324
Bsp143I GATC 3 cut(s) 118, 189, 245
Bsp68I TCGCGA 1 cut(s) 114
BspCNI CTCAG 2 cut(s) 40, 49
BspFNI CGCG 1 cut(s) 114
BspHI TCATGA 1 cut(s) 295
BspMAI CTGCAG 1 cut(s) 390
BsrDI GCAATG 1 cut(s) 445
BssECI CCNNGG 2 cut(s) 306, 342
BssMI GATC 3 cut(s) 118, 189, 245
BssT1I CCWWGG 2 cut(s) 306, 342
Bst4CI ACNGT 2 cut(s) 104, 131
BstDEI CTNAG 4 cut(s) 48, 57, 414, 523
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 3 cut(s) 121, 192, 248
BstMAI GTCTC 2 cut(s) 175, 396
BstMBI GATC 3 cut(s) 118, 189, 245
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 146
BstSFI CTRYAG 1 cut(s) 386
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 166, 245
BstV2I GAAGAC 1 cut(s) 12
BstXI CCANNNNNNTGG 1 cut(s) 82
Bsu36I CCTNAGG 1 cut(s) 57
BsuI GTATCC 1 cut(s) 307
BtgZI GCGATG 1 cut(s) 95
BtuMI TCGCGA 1 cut(s) 114
CciI TCATGA 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 3 cut(s) 79, 151, 429
CviAII CATG 2 cut(s) 76, 296
CviJI RGCY 6 cut(s) 35, 258, 278, 287, 320, 502
CviKI_1 RGCY 6 cut(s) 35, 258, 278, 287, 320, 502
CviQI GTAC 3 cut(s) 79, 151, 429
DdeI CTNAG 4 cut(s) 48, 57, 414, 523
DpnI GATC 3 cut(s) 120, 191, 247
DpnII GATC 3 cut(s) 118, 189, 245
DriI GACNNNNNGTC 1 cut(s) 102
Eam1105I GACNNNNNGTC 1 cut(s) 102
Eco130I CCWWGG 2 cut(s) 306, 342
Eco47I GGWCC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 524
Eco81I CCTNAGG 1 cut(s) 57
EcoRI GAATTC 1 cut(s) 16
EcoT14I CCWWGG 2 cut(s) 306, 342
ErhI CCWWGG 2 cut(s) 306, 342
FaeI CATG 2 cut(s) 79, 299
FaiI YATR 7 cut(s) 23, 77, 167, 297, 358, 374, 539
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 1 cut(s) 324
FatI CATG 2 cut(s) 75, 295
Fnu4HI GCNGC 2 cut(s) 180, 259
Fsp4HI GCNGC 2 cut(s) 180, 259
GluI GCNGC 2 cut(s) 180, 259
GsaI CCCAGC 1 cut(s) 258
HapII CCGG 1 cut(s) 147
Hin1II CATG 2 cut(s) 79, 299
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 2 cut(s) 8, 50
HpaII CCGG 1 cut(s) 147
HphI GGTGA 1 cut(s) 243
Hpy188I TCNGA 2 cut(s) 49, 175
Hpy188III TCNNGA 3 cut(s) 94, 113, 296
Hpy99I CGWCG 1 cut(s) 119
HpyCH4III ACNGT 2 cut(s) 104, 131
HpyCH4V TGCA 3 cut(s) 261, 388, 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 4 cut(s) 48, 57, 414, 523
Hsp92II CATG 2 cut(s) 79, 299
Kzo9I GATC 3 cut(s) 118, 189, 245
LpnPI CCDG 5 cut(s) 69, 160, 268, 342, 420
Lsp1109I GCAGC 2 cut(s) 166, 245
LweI GCATC 4 cut(s) 166, 270, 292, 436
MaeIII GTNAC 2 cut(s) 215, 488
MalI GATC 3 cut(s) 120, 191, 247
MboI GATC 3 cut(s) 118, 189, 245
MboII GAAGA 7 cut(s) 17, 33, 36, 98, 177, 233, 517
MluCI AATT 3 cut(s) 16, 199, 464
MlyI GAGTC 2 cut(s) 2, 59
MmeI TCCRAC 1 cut(s) 50
MnlI CCTC 4 cut(s) 52, 154, 304, 474
MroXI GAANNNNTTC 1 cut(s) 430
MseI TTAA 2 cut(s) 203, 474
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 148
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 284
NciI CCSGG 1 cut(s) 148
NdeII GATC 3 cut(s) 118, 189, 245
NlaIII CATG 2 cut(s) 79, 299
NmuCI GTSAC 1 cut(s) 488
NruI TCGCGA 1 cut(s) 114
PagI TCATGA 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 430
PkrI GCNGC 2 cut(s) 181, 260
PleI GAGTC 2 cut(s) 2, 58
PpsI GAGTC 2 cut(s) 2, 58
PspFI CCCAGC 1 cut(s) 254
PspPI GGNCC 1 cut(s) 72
PstI CTGCAG 1 cut(s) 390
PvuII CAGCTG 1 cut(s) 258
RruI TCGCGA 1 cut(s) 114
RsaI GTAC 3 cut(s) 80, 152, 430
RsaNI GTAC 3 cut(s) 79, 151, 429
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 2 cut(s) 203, 474
SatI GCNGC 2 cut(s) 180, 259
Sau3AI GATC 3 cut(s) 118, 189, 245
Sau96I GGNCC 1 cut(s) 72
ScaI AGTACT 1 cut(s) 430
SchI GAGTC 2 cut(s) 2, 59
ScrFI CCNGG 1 cut(s) 148
SetI ASST 6 cut(s) 37, 260, 289, 322, 348, 504
SfaNI GCATC 4 cut(s) 166, 270, 292, 436
SfcI CTRYAG 1 cut(s) 386
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 3 cut(s) 16, 199, 464
StyD4I CCNGG 1 cut(s) 146
StyI CCWWGG 2 cut(s) 306, 342
TaaI ACNGT 2 cut(s) 104, 131
TaqI TCGA 1 cut(s) 188
TasI AATT 3 cut(s) 16, 199, 464
TatI WGTACW 2 cut(s) 78, 428
Tru1I TTAA 2 cut(s) 203, 474
Tru9I TTAA 2 cut(s) 203, 474
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 2 cut(s) 179, 258
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 3 cut(s) 123, 284, 389
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 2 cut(s) 16, 199
XmnI GAANNNNTTC 1 cut(s) 430
ZrmI AGTACT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.