pycom03g15810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0013914
Physical Location & Seq
Forward (+)
17066748 .. 17067776
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g15810.2

Sequence Viewer

Length: 648 bp
ATGATCAAGAATATTGATCAGATACCCGCTCTCCTCTGGACGTCTTTTCTTCAACTTCCCAACAGTTTACTACCAACACCATATTCCTATATTTCCCTGTTCTATTTTCATCATCTTATTAATTCAAAAAGCACTACACAGATGGAAGATCGCTCCAGAAACTCTATGATCGGAAGAGGTAATTCTTCTGATACAAGAACCACTCCTCAAGAGTCCCCTGAGGAGAGTAGTTGGACTATGTACTTGCAAGATTTCATGACAACCAATAGTCAAGACGATGACGATGACGAACGCAGTTCTTTCTCCTCATACGGTTATGAGAATTGTTCCATAATCTCCGACGCCGGTTCTTCAGTCACCCGAAAGTTTACTATTAATGGAGAAGTTTTAGGGTTTGGCGTGGTTGGAGGTTATAATAGATCTGGCGTCATGTTTAAGAGACAACCCAAAGAAGTTTTGCTTGATGATGCTTTGGAGGACACAGCTACTTCTCCAGTAAATAGTCCCAAGGAGAAAGGAAGTACTTCTGGCCGGGTGGATGAGAGAAATGAATCGGGATTTATTGGGAGAGAGAGTGACTGCACAGAACTGAAGAAAAGAGGACTTTGCTTGGTTCCATTTTCTACGGTAGCAAACTATTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

24.02

Weight (kDa)

4.84

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54790
fragaria_vesca FvH4_3g22010 FvH4_3g22010
malus_domestica MD03G1209200.v1.1 MD11G1224000.v1.1
prunus_persica Prupe.4G205800_v2.0.a1 Prupe.4G205800_v2.0.a1
pyrus_communis pycom03g15810 pycom11g19760
rosa_laevigata RLG00000033818
rosa_roxburghii Rroxscaffold_1G00043060
rosa_rugosa Rorug05G0168200 Rorug05G0168200
rosa_samantha Rh5BG259500 Rh5CG292500 Rh5DG269400
rosa_wichuraiana Rw5G023840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 414
AatII GACGTC 1 cut(s) 44
AccBSI CCGCTC 1 cut(s) 29
AciI CCGC 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 529
AcuI CTGAAG 2 cut(s) 336, 611
AcyI GRCGYC 3 cut(s) 41, 342, 426
AfaI GTAC 2 cut(s) 242, 523
AgsI TTSAA 2 cut(s) 53, 126
AjuI GAANNNNNNNTTGG 2 cut(s) 67, 99
AluBI AGCT 1 cut(s) 485
AluI AGCT 1 cut(s) 485
Alw26I GTCTC 1 cut(s) 433
AoxI GGCC 1 cut(s) 529
AseI ATTAAT 2 cut(s) 120, 375
Asp700I GAANNNNTTC 1 cut(s) 523
AsuC2I CCSGG 1 cut(s) 533
AsuHPI GGTGA 1 cut(s) 349
AxyI CCTNAGG 1 cut(s) 219
BccI CCATC 1 cut(s) 136
BclI TGATCA 2 cut(s) 3, 16
BcnI CCSGG 1 cut(s) 533
BcoDI GTCTC 1 cut(s) 433
BglII AGATCT 1 cut(s) 419
BmcAI AGTACT 1 cut(s) 523
Bme1390I CCNGG 1 cut(s) 533
BmiI GGNNCC 1 cut(s) 615
BmrFI CCNGG 1 cut(s) 533
BmsI GCATC 1 cut(s) 457
BpmI CTGGAG 2 cut(s) 139, 477
BpuEI CTTGAG 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 533
BsaHI GRCGYC 3 cut(s) 41, 342, 426
BsaJI CCNNGG 1 cut(s) 507
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 559, 589
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 1 cut(s) 494
Bse21I CCTNAGG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 507
BseGI GGATG 1 cut(s) 544
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 494
BseRI GAGGAG 4 cut(s) 23, 195, 236, 295
BsgI GTGCAG 1 cut(s) 565
BshFI GGCC 1 cut(s) 531
BsiSI CCGG 2 cut(s) 345, 532
BslFI GGGAC 2 cut(s) 199, 489
BsmAI GTCTC 1 cut(s) 433
BsmFI GGGAC 2 cut(s) 199, 489
BsnI GGCC 1 cut(s) 531
Bsp143I GATC 5 cut(s) 3, 16, 148, 168, 419
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 531
BspCNI CTCAG 1 cut(s) 211
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 615
BsrBI CCGCTC 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 344
BsrI ACTGG 1 cut(s) 494
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 507
BssMI GATC 5 cut(s) 3, 16, 148, 168, 419
BssNI GRCGYC 3 cut(s) 41, 342, 426
BssT1I CCWWGG 1 cut(s) 507
Bst4CI ACNGT 3 cut(s) 65, 314, 628
Bst6I CTCTTC 1 cut(s) 169
BstACI GRCGYC 3 cut(s) 41, 342, 426
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 544
BstKTI GATC 5 cut(s) 6, 19, 151, 171, 422
BstMAI GTCTC 1 cut(s) 433
BstMBI GATC 5 cut(s) 3, 16, 148, 168, 419
BstSCI CCNGG 1 cut(s) 531
BstX2I RGATCY 1 cut(s) 419
BstYI RGATCY 1 cut(s) 419
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 1 cut(s) 531
BtsCI GGATG 1 cut(s) 544
CciI TCATGA 1 cut(s) 255
Cfr10I RCCGGY 1 cut(s) 344
CseI GACGC 2 cut(s) 350, 415
Csp6I GTAC 2 cut(s) 241, 522
CviAII CATG 2 cut(s) 256, 430
CviJI RGCY 2 cut(s) 485, 531
CviKI_1 RGCY 2 cut(s) 485, 531
CviQI GTAC 2 cut(s) 241, 522
DdeI CTNAG 1 cut(s) 219
DpnI GATC 5 cut(s) 5, 18, 150, 170, 421
DpnII GATC 5 cut(s) 3, 16, 148, 168, 419
EaeI YGGCCR 1 cut(s) 529
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 507
Eco57I CTGAAG 2 cut(s) 336, 611
Eco81I CCTNAGG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 507
FaeI CATG 2 cut(s) 259, 433
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 2 cut(s) 199, 489
FatI CATG 2 cut(s) 255, 429
FauI CCCGC 1 cut(s) 34
FbaI TGATCA 2 cut(s) 3, 16
FokI GGATG 1 cut(s) 551
GsuI CTGGAG 2 cut(s) 139, 477
HaeIII GGCC 1 cut(s) 531
HapII CCGG 2 cut(s) 345, 532
HgaI GACGC 2 cut(s) 350, 415
Hin1I GRCGYC 3 cut(s) 41, 342, 426
Hin1II CATG 2 cut(s) 259, 433
HinfI GANTC 2 cut(s) 212, 551
HpaII CCGG 2 cut(s) 345, 532
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 2 cut(s) 68, 369
Hpy188I TCNGA 4 cut(s) 21, 173, 190, 340
Hpy188III TCNNGA 7 cut(s) 7, 37, 156, 209, 256, 272, 555
Hpy8I GTNNAC 2 cut(s) 68, 369
Hpy99I CGWCG 1 cut(s) 344
HpyCH4III ACNGT 3 cut(s) 65, 314, 628
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 247, 582
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 1 cut(s) 41
Hsp92I GRCGYC 3 cut(s) 41, 342, 426
Hsp92II CATG 2 cut(s) 259, 433
Ksp22I TGATCA 2 cut(s) 3, 16
Kzo9I GATC 5 cut(s) 3, 16, 148, 168, 419
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 9 cut(s) 22, 110, 169, 231, 358, 408, 507, 513, 545
LweI GCATC 1 cut(s) 457
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 2 cut(s) 355, 575
MalI GATC 5 cut(s) 5, 18, 150, 170, 421
MbiI CCGCTC 1 cut(s) 29
MboI GATC 5 cut(s) 3, 16, 148, 168, 419
MboII GAAGA 6 cut(s) 41, 158, 177, 186, 342, 604
MflI RGATCY 1 cut(s) 419
MluCI AATT 3 cut(s) 121, 181, 322
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 3 cut(s) 212, 363, 385
MnlI CCTC 8 cut(s) 44, 170, 214, 216, 316, 401, 469, 593
MroXI GAANNNNTTC 1 cut(s) 523
MseI TTAA 3 cut(s) 120, 375, 435
MspI CCGG 2 cut(s) 345, 532
MspR9I CCNGG 1 cut(s) 533
NciI CCSGG 1 cut(s) 533
NdeII GATC 5 cut(s) 3, 16, 148, 168, 419
NlaIII CATG 2 cut(s) 259, 433
NlaIV GGNNCC 1 cut(s) 615
NmuCI GTSAC 2 cut(s) 355, 575
PagI TCATGA 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 523
PfeI GAWTC 1 cut(s) 551
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PshBI ATTAAT 2 cut(s) 120, 375
PsiI TTATAA 1 cut(s) 414
PspN4I GGNNCC 1 cut(s) 615
PsuI RGATCY 1 cut(s) 419
RsaI GTAC 2 cut(s) 242, 523
RsaNI GTAC 2 cut(s) 241, 522
SaqAI TTAA 3 cut(s) 120, 375, 435
Sau3AI GATC 5 cut(s) 3, 16, 148, 168, 419
ScaI AGTACT 1 cut(s) 523
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 533
SetI ASST 4 cut(s) 44, 181, 412, 487
SfaNI GCATC 1 cut(s) 457
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
Sse9I AATT 3 cut(s) 121, 181, 322
SsiI CCGC 1 cut(s) 27
SspI AATATT 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 531
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 3 cut(s) 65, 314, 628
TaiI ACGT 1 cut(s) 44
TasI AATT 3 cut(s) 121, 181, 322
TatI WGTACW 2 cut(s) 240, 521
TfiI GAWTC 1 cut(s) 551
Tru1I TTAA 3 cut(s) 120, 375, 435
Tru9I TTAA 3 cut(s) 120, 375, 435
TseFI GTSAC 2 cut(s) 355, 575
Tsp45I GTSAC 2 cut(s) 355, 575
TspDTI ATGAA 3 cut(s) 98, 244, 564
VspI ATTAAT 2 cut(s) 120, 375
XmnI GAANNNNTTC 1 cut(s) 523
ZraI GACGTC 1 cut(s) 42
ZrmI AGTACT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.