RLG00000033818

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013914
Physical Location & Seq
Reverse (-)
32577956 .. 32578769
814 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033818

Sequence Viewer

Length: 537 bp
ATGGAAAAAGCTTGTTCTTCTTCTGAGTCGCCTGAGGAGAGTAGTTGGACCATGTACTTGGAAGATTTCTTGACAAACAGTCATCATAATGACGATCAACAGCACAGTTCATCTTTCTCCTCCGGGTACAAAAACCATTCCATAGTCTCTGATGCTGCTTCTTCGATCAGCAAAAATTTAAGTAATATCTGTAACGAAGAAGTTTTAGGGTTTAGCAACAGATCATCACCCAGCTGCATCATCAAAAGAAAAGCCAAAAAAGCTTTACTTCATGATGATGCCTTGGAGGATACAGCTACTTCTCCTGTAAATAGTCCCAAGGTTTGTAATCTATACCATTCAGCAGATATGAAACAAAATCTGCAGAACGATAATAGAGACATCATTTCTAAGGAGAAAGGAAGTACTTCTGGCAATGTAGATGCGACAAGTCCTTCTGAATTGGATTTTAATAGGAGGGAAAGTGACTGCACAGAGCTGAAGAAAAAAGGACTTTGCTTAGTTCCATTTTCTATGGTCGCCAACTACTTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

19.64

Weight (kDa)

5.48

Isoelectric Point (pI)

65.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54790
fragaria_vesca FvH4_3g22010 FvH4_3g22010
malus_domestica MD03G1209200.v1.1 MD11G1224000.v1.1
prunus_persica Prupe.4G205800_v2.0.a1 Prupe.4G205800_v2.0.a1
pyrus_communis pycom03g15810 pycom11g19760
rosa_laevigata RLG00000033818
rosa_roxburghii Rroxscaffold_1G00043060
rosa_rugosa Rorug05G0168200 Rorug05G0168200
rosa_samantha Rh5BG259500 Rh5CG292500 Rh5DG269400
rosa_wichuraiana Rw5G023840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 175
AcuI CTGAAG 1 cut(s) 500
AfaI GTAC 3 cut(s) 56, 128, 406
AhdI GACNNNNNGTC 1 cut(s) 78
AluBI AGCT 5 cut(s) 11, 234, 263, 296, 478
AluI AGCT 5 cut(s) 11, 234, 263, 296, 478
Alw26I GTCTC 2 cut(s) 151, 372
ApeKI GCWGC 2 cut(s) 155, 234
ApoI RAATTY 1 cut(s) 175
Asp700I GAANNNNTTC 1 cut(s) 406
AspS9I GGNCC 1 cut(s) 48
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 219
AvaII GGWCC 1 cut(s) 48
AxyI CCTNAGG 1 cut(s) 33
BbvI GCAGC 2 cut(s) 142, 221
BciVI GTATCC 1 cut(s) 283
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 2 cut(s) 151, 372
BfmI CTRYAG 1 cut(s) 362
BfuI GTATCC 1 cut(s) 283
BisI GCNGC 2 cut(s) 156, 235
BlsI GCNGC 2 cut(s) 157, 236
BmcAI AGTACT 1 cut(s) 406
Bme1390I CCNGG 1 cut(s) 124
Bme18I GGWCC 1 cut(s) 48
BmeRI GACNNNNNGTC 1 cut(s) 78
BmgT120I GGNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 124
BmsI GCATC 4 cut(s) 142, 246, 268, 412
BpuMI CCSGG 1 cut(s) 124
BsaJI CCNNGG 2 cut(s) 282, 318
BsaXI ACNNNNNCTCC 2 cut(s) 448, 478
Bse21I CCTNAGG 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 421
BseDI CCNNGG 2 cut(s) 282, 318
BseMI GCAATG 1 cut(s) 421
BseMII CTCAG 2 cut(s) 15, 24
BseRI GAGGAG 2 cut(s) 50, 109
BseXI GCAGC 2 cut(s) 142, 221
BseYI CCCAGC 1 cut(s) 230
BsgI GTGCAG 1 cut(s) 454
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 300
BsmAI GTCTC 2 cut(s) 151, 372
BsmFI GGGAC 1 cut(s) 300
Bsp143I GATC 3 cut(s) 94, 165, 221
BspCNI CTCAG 2 cut(s) 16, 25
BspHI TCATGA 1 cut(s) 271
BspMAI CTGCAG 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 421
BssECI CCNNGG 2 cut(s) 282, 318
BssMI GATC 3 cut(s) 94, 165, 221
BssT1I CCWWGG 2 cut(s) 282, 318
Bst4CI ACNGT 2 cut(s) 80, 107
BstDEI CTNAG 4 cut(s) 24, 33, 390, 499
BstKTI GATC 3 cut(s) 97, 168, 224
BstMAI GTCTC 2 cut(s) 151, 372
BstMBI GATC 3 cut(s) 94, 165, 221
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 362
BstV1I GCAGC 2 cut(s) 142, 221
BstXI CCANNNNNNTGG 1 cut(s) 58
Bsu36I CCTNAGG 1 cut(s) 33
BsuI GTATCC 1 cut(s) 283
CciI TCATGA 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 48
Csp6I GTAC 3 cut(s) 55, 127, 405
CviAII CATG 2 cut(s) 52, 272
CviJI RGCY 6 cut(s) 11, 234, 254, 263, 296, 478
CviKI_1 RGCY 6 cut(s) 11, 234, 254, 263, 296, 478
CviQI GTAC 3 cut(s) 55, 127, 405
DdeI CTNAG 4 cut(s) 24, 33, 390, 499
DpnI GATC 3 cut(s) 96, 167, 223
DpnII GATC 3 cut(s) 94, 165, 221
DriI GACNNNNNGTC 1 cut(s) 78
Eam1105I GACNNNNNGTC 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 282, 318
Eco47I GGWCC 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 500
Eco81I CCTNAGG 1 cut(s) 33
EcoT14I CCWWGG 2 cut(s) 282, 318
ErhI CCWWGG 2 cut(s) 282, 318
FaeI CATG 2 cut(s) 55, 275
FaiI YATR 7 cut(s) 53, 87, 143, 273, 334, 350, 515
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FaqI GGGAC 1 cut(s) 300
FatI CATG 2 cut(s) 51, 271
Fnu4HI GCNGC 2 cut(s) 156, 235
Fsp4HI GCNGC 2 cut(s) 156, 235
GluI GCNGC 2 cut(s) 156, 235
GsaI CCCAGC 1 cut(s) 234
HapII CCGG 1 cut(s) 123
Hin1II CATG 2 cut(s) 55, 275
HindIII AAGCTT 2 cut(s) 9, 261
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 219
Hpy188I TCNGA 3 cut(s) 25, 151, 439
Hpy188III TCNNGA 2 cut(s) 70, 272
HpyAV CCTTC 1 cut(s) 444
HpyCH4III ACNGT 2 cut(s) 80, 107
HpyCH4V TGCA 3 cut(s) 237, 364, 471
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 4 cut(s) 24, 33, 390, 499
Hsp92II CATG 2 cut(s) 55, 275
Kzo9I GATC 3 cut(s) 94, 165, 221
LpnPI CCDG 5 cut(s) 45, 136, 244, 318, 396
Lsp1109I GCAGC 2 cut(s) 142, 221
LweI GCATC 4 cut(s) 142, 246, 268, 412
MaeIII GTNAC 2 cut(s) 191, 464
MalI GATC 3 cut(s) 96, 167, 223
MboI GATC 3 cut(s) 94, 165, 221
MboII GAAGA 6 cut(s) 9, 12, 74, 153, 209, 493
MluCI AATT 2 cut(s) 175, 440
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 4 cut(s) 28, 130, 280, 450
MroXI GAANNNNTTC 1 cut(s) 406
MseI TTAA 2 cut(s) 179, 450
MslI CAYNNNNRTG 2 cut(s) 87, 276
MspA1I CMGCKG 1 cut(s) 234
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 260
NciI CCSGG 1 cut(s) 124
NdeII GATC 3 cut(s) 94, 165, 221
NlaIII CATG 2 cut(s) 55, 275
NmuCI GTSAC 1 cut(s) 464
PagI TCATGA 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 406
PkrI GCNGC 2 cut(s) 157, 236
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 48
PstI CTGCAG 1 cut(s) 366
PvuII CAGCTG 1 cut(s) 234
RsaI GTAC 3 cut(s) 56, 128, 406
RsaNI GTAC 3 cut(s) 55, 127, 405
RseI CAYNNNNRTG 2 cut(s) 87, 276
SaqAI TTAA 2 cut(s) 179, 450
SatI GCNGC 2 cut(s) 156, 235
Sau3AI GATC 3 cut(s) 94, 165, 221
Sau96I GGNCC 1 cut(s) 48
ScaI AGTACT 1 cut(s) 406
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 124
SetI ASST 6 cut(s) 13, 236, 265, 298, 324, 480
SfaNI GCATC 4 cut(s) 142, 246, 268, 412
SfcI CTRYAG 1 cut(s) 362
SinI GGWCC 1 cut(s) 48
SmiMI CAYNNNNRTG 2 cut(s) 87, 276
Sse9I AATT 2 cut(s) 175, 440
StyD4I CCNGG 1 cut(s) 122
StyI CCWWGG 2 cut(s) 282, 318
TaaI ACNGT 2 cut(s) 80, 107
TaqI TCGA 1 cut(s) 164
TasI AATT 2 cut(s) 175, 440
TatI WGTACW 2 cut(s) 54, 404
Tru1I TTAA 2 cut(s) 179, 450
Tru9I TTAA 2 cut(s) 179, 450
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 2 cut(s) 155, 234
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 3 cut(s) 99, 260, 365
VpaK11BI GGWCC 1 cut(s) 48
XapI RAATTY 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 406
ZrmI AGTACT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.