Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009906

Physical Location & Seq

Genomic Coordinates Reverse (-)

22276343 .. 22278423

Gene Structure 2081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCCGAGAAAGTCCATGAGATCGCCGGAAAGATAACTCCTTTCTGCCGGAAAATAGTTCACGTGAACAGAAAATGGAGAATCATCGAGAGGGTATCGATCTTTGGAGATTTCTTTAGGTTTCTATGGAGAAAAATTGTTTCTTGTTCAAGTATCATCGAAAAACCTATTCTTTACCGGCGAATCGTTCACAAGATTTCTTCCACCGCGGGCGATATCTTTGACGGAGACGACGATACTACGACAGAACCTACTGTTTCCGGTAGAAGGTTTGGTTCAAGTTCGGATTCGGATTTGGTTAGTCTCAAGATCAGTTTATTAGGCGATTGTCAAACAGGGAAGACTACTTTTGTAGTAAAATATGTTGGAGATGAGAATCAAAGTTTCTTGGAGATGACGGGTTTGAATTTGATGGACAAAACTTTTTATGTTCAAGGAGTTACTATTTCGTTTAGCATTTGGGATGTGGGAGGTGATGAAAAGAGATCAAAAGATCATATACCAATTGCTTGTAAAGATGCAGTAGCAATCTTGTTCATGTTTGATCTAACCAGTCGATCTACTCTTAACAGTGTCTTCGGGTGGTATAGCCAGGCAAGAAAATGGAACAAGACGGCAATTCCGATTCTAATAGGAACAAAATTCGATGACTTTGTTCGGCTCCCACCCAATCTTCAGTGGACCATCGTCACTCAGGCAAGAGCATATGCGAAGGTGATGAATGCGTCATTGTTCTTCTCAAGTGCGACACACAACATAAATGTGAACAAGATCTTCAAATTCATTTTGGCTAGACTTTTTAATTTGCCTTGGAAGATTGACAGAAATTTGACCTTAGGTGAACCCATTATCGACTACGATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000910 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005815 GO:0005816 GO:0005856 GO:0007049 GO:0007088 GO:0007096 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007346 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010973 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022402 GO:0023052 GO:0031028 GO:0031991 GO:0032465 GO:0032467 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032954 GO:0032955 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044732 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0065007 GO:0070727 GO:0090068 GO:0097159 GO:0097367 GO:0110020 GO:1901265 GO:1901363 GO:1901891 GO:1901893 GO:1901987 GO:1901990 GO:1902412 GO:1903436 GO:1903438 GO:1903490

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Ras

Protein Analysis

288

Amino Acids

32.83

Weight (kDa)

9.28

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	103 - 265	2e-20	Ras family
Roc	PF08477	103 - 216	8.3e-16	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54840 AT5G54840 AT5G54840
fragaria_vesca	FvH4_3g22110 FvH4_3g22110 FvH4_3g22110 FvH4_3g22110
malus_domestica	MD03G1208300.v1.1 MD11G1222500.v1.1
prunus_persica	Prupe.4G208400_v2.0.a1
pyrus_communis	pycom03g15700 pycom11g19630
rosa_chinensis	RchiOBHm_Chr5g0037931
rosa_laevigata	RLG00000033825
rosa_roxburghii	Rroxscaffold_1G00042930
rosa_rugosa	Rorug05G0169800
rosa_samantha	Rh5AG257800 Rh5BG260700 Rh5CG293200 Rh5DG270100
rosa_wichuraiana	Rw5G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	209
AciI	CCGC	2 cut(s)	207, 209
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	406, 641, 779, 826
AcuI	CTGAAG	1 cut(s)	659
AcvI	CACGTG	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgsI	TTSAA	5 cut(s)	150, 279, 406, 434, 778
AjnI	CCWGG	1 cut(s)	591
Alw26I	GTCTC	2 cut(s)	222, 308
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	4 cut(s)	406, 641, 779, 826
AspS9I	GGNCC	1 cut(s)	681
AsuHPI	GGTGA	3 cut(s)	485, 727, 851
AvaII	GGWCC	1 cut(s)	681
AxyI	CCTNAGG	1 cut(s)	835
BbrPI	CACGTG	1 cut(s)	64
BbsI	GAAGAC	2 cut(s)	347, 568
BccI	CCATC	2 cut(s)	406, 692
BceAI	ACGGC	1 cut(s)	630
BciT130I	CCWGG	1 cut(s)	593
BcoDI	GTCTC	2 cut(s)	222, 308
BfaI	CTAG	1 cut(s)	792
BglII	AGATCT	1 cut(s)	771
Bme1390I	CCNGG	1 cut(s)	593
Bme18I	GGWCC	1 cut(s)	681
BmgT120I	GGNCC	1 cut(s)	681
BmiI	GGNNCC	1 cut(s)	662
BmrFI	CCNGG	1 cut(s)	593
BmsI	GCATC	1 cut(s)	508
BoxI	GACNNNNGTC	1 cut(s)	686
BpiI	GAAGAC	2 cut(s)	347, 568
BpuEI	CTTGAG	2 cut(s)	290, 724
Bsa29I	ATCGAT	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	64
BsaBI	GATNNNNATC	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	207, 809
BsaWI	WCCGGW	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse118I	RCCGGY	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	552
Bse21I	CCTNAGG	1 cut(s)	835
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	593
BseCI	ATCGAT	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	207, 809
BseGI	GGATG	1 cut(s)	469
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	707
BseNI	ACTGG	1 cut(s)	552
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	27, 49, 178, 261
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	2 cut(s)	222, 308
BsmBI	CGTCTC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	8 cut(s)	21, 99, 309, 485, 493, 544, 557, 771
BspACI	CCGC	2 cut(s)	207, 209
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	706
BspDI	ATCGAT	1 cut(s)	98
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	662
BsrFI	RCCGGY	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	552
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	207, 809
BssMI	GATC	8 cut(s)	21, 99, 309, 485, 493, 544, 557, 771
BssT1I	CCWWGG	1 cut(s)	809
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	2 cut(s)	256, 572
BstBAI	YACGTR	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	2 cut(s)	693, 835
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	469
BstFNI	CGCG	1 cut(s)	209
BstKTI	GATC	8 cut(s)	24, 102, 312, 488, 496, 547, 560, 774
BstMAI	GTCTC	2 cut(s)	222, 308
BstMBI	GATC	8 cut(s)	21, 99, 309, 485, 493, 544, 557, 771
BstNI	CCWGG	1 cut(s)	593
BstPAI	GACNNNNGTC	1 cut(s)	686
BstSCI	CCNGG	1 cut(s)	591
BstUI	CGCG	1 cut(s)	209
BstV2I	GAAGAC	2 cut(s)	347, 568
BstX2I	RGATCY	1 cut(s)	771
BstYI	RGATCY	1 cut(s)	771
Bsu15I	ATCGAT	1 cut(s)	98
Bsu36I	CCTNAGG	1 cut(s)	835
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	98
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	469
BtsIMutI	CAGTG	2 cut(s)	577, 683
Cac8I	GCNNGC	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	681
Cfr42I	CCGCGG	1 cut(s)	210
ClaI	ATCGAT	1 cut(s)	98
CseI	GACGC	1 cut(s)	714
CviAII	CATG	2 cut(s)	17, 538
CviJI	RGCY	4 cut(s)	5, 591, 661, 791
CviKI_1	RGCY	4 cut(s)	5, 591, 661, 791
DdeI	CTNAG	2 cut(s)	693, 835
DpnI	GATC	8 cut(s)	23, 101, 311, 487, 495, 546, 559, 773
DpnII	GATC	8 cut(s)	21, 99, 309, 485, 493, 544, 557, 771
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	809
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	681
Eco57I	CTGAAG	1 cut(s)	659
Eco72I	CACGTG	1 cut(s)	64
Eco81I	CCTNAGG	1 cut(s)	835
EcoRII	CCWGG	1 cut(s)	591
EcoRV	GATATC	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	809
ErhI	CCWWGG	1 cut(s)	809
Esp3I	CGTCTC	1 cut(s)	222
FaeI	CATG	2 cut(s)	20, 541
FatI	CATG	2 cut(s)	16, 537
FauI	CCCGC	1 cut(s)	202
FauNDI	CATATG	1 cut(s)	706
FokI	GGATG	1 cut(s)	476
FspBI	CTAG	1 cut(s)	792
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	27, 49, 178, 261
HgaI	GACGC	1 cut(s)	714
Hin1II	CATG	2 cut(s)	20, 541
HinfI	GANTC	6 cut(s)	81, 183, 287, 376, 625, 860
HpaII	CCGG	4 cut(s)	27, 49, 178, 261
HphI	GGTGA	3 cut(s)	485, 727, 851
Hpy166II	GTNNAC	6 cut(s)	61, 67, 190, 681, 766, 842
Hpy188I	TCNGA	3 cut(s)	286, 292, 624
Hpy188III	TCNNGA	2 cut(s)	88, 307
Hpy8I	GTNNAC	6 cut(s)	61, 67, 190, 681, 766, 842
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	261, 706
HpyCH4III	ACNGT	2 cut(s)	256, 572
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	521
HpyF3I	CTNAG	2 cut(s)	693, 835
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	20, 541
KspI	CCGCGG	1 cut(s)	210
Kzo9I	GATC	8 cut(s)	21, 99, 309, 485, 493, 544, 557, 771
LmnI	GCTCC	1 cut(s)	666
LpnPI	CCDG	9 cut(s)	40, 62, 191, 274, 321, 565, 578, 605, 680
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	1 cut(s)	792
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	439, 688
MalI	GATC	8 cut(s)	23, 101, 311, 487, 495, 546, 559, 773
MboI	GATC	8 cut(s)	21, 99, 309, 485, 493, 544, 557, 771
MboII	GAAGA	7 cut(s)	192, 352, 568, 665, 727, 766, 826
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	1 cut(s)	771
MluCI	AATT	8 cut(s)	135, 406, 504, 618, 641, 779, 802, 826
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	2 cut(s)	84, 464
MseI	TTAA	2 cut(s)	567, 801
MslI	CAYNNNNRTG	1 cut(s)	761
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	4 cut(s)	27, 49, 178, 261
MspR9I	CCNGG	1 cut(s)	593
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	1 cut(s)	593
MvnI	CGCG	1 cut(s)	209
NdeI	CATATG	1 cut(s)	706
NdeII	GATC	8 cut(s)	21, 99, 309, 485, 493, 544, 557, 771
NlaIII	CATG	2 cut(s)	20, 541
NlaIV	GGNNCC	1 cut(s)	662
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	688
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 620
PctI	GAATGC	1 cut(s)	727
PfeI	GAWTC	6 cut(s)	81, 183, 287, 376, 625, 860
PmaCI	CACGTG	1 cut(s)	64
PmlI	CACGTG	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	64
PshAI	GACNNNNGTC	1 cut(s)	686
Psp6I	CCWGG	1 cut(s)	591
PspCI	CACGTG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	1 cut(s)	662
PspPI	GGNCC	1 cut(s)	681
PsuI	RGATCY	1 cut(s)	771
RseI	CAYNNNNRTG	1 cut(s)	761
SacII	CCGCGG	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	567, 801
Sau3AI	GATC	8 cut(s)	21, 99, 309, 485, 493, 544, 557, 771
Sau96I	GGNCC	1 cut(s)	681
ScrFI	CCNGG	1 cut(s)	593
SetI	ASST	9 cut(s)	66, 122, 169, 253, 272, 475, 717, 836, 841
SfaNI	GCATC	1 cut(s)	508
Sfr303I	CCGCGG	1 cut(s)	210
SgrBI	CCGCGG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	681
SmiMI	CAYNNNNRTG	1 cut(s)	761
SmlI	CTYRAG	2 cut(s)	305, 739
SmoI	CTYRAG	2 cut(s)	305, 739
Sse9I	AATT	8 cut(s)	135, 406, 504, 618, 641, 779, 802, 826
SsiI	CCGC	2 cut(s)	207, 209
SspMI	CTAG	1 cut(s)	792
StyD4I	CCNGG	1 cut(s)	591
StyI	CCWWGG	1 cut(s)	809
TaaI	ACNGT	2 cut(s)	256, 572
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	6 cut(s)	87, 98, 159, 556, 645, 852
TasI	AATT	8 cut(s)	135, 406, 504, 618, 641, 779, 802, 826
TfiI	GAWTC	6 cut(s)	81, 183, 287, 376, 625, 860
Tru1I	TTAA	2 cut(s)	567, 801
Tru9I	TTAA	2 cut(s)	567, 801
TscAI	CASTG	2 cut(s)	577, 683
TseFI	GTSAC	1 cut(s)	688
Tsp45I	GTSAC	1 cut(s)	688
TspDTI	ATGAA	4 cut(s)	492, 526, 734, 772
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	2 cut(s)	577, 683
VpaK11BI	GGWCC	1 cut(s)	681
XapI	RAATTY	4 cut(s)	406, 641, 779, 826
XspI	CTAG	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.