Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009906

Physical Location & Seq

Genomic Coordinates Reverse (-)

15153454 .. 15156246

Gene Structure 2793 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22110.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCAAGAAGCATACGTGAAGCTATAGCAAAGATGACGCAACTGGTGTGCCGGAAAATCGTTCACATAAACTTCCGGTGGAGTATTCTAGACAGGGTCTCGATTATCCGGGAGTTTTTCCGGTTCATTTGGGATAAAATTCTTGTTTGTTCGGTCGGGAAGCAGAGAATCCGGTACCGGAGATTGTCACGAGGAGGGTCTACGTCGCCGCCGCAGGAGGCGATAGAGGGGGGTTTGCCGACGACTAGTAGTTGTGATGGTTATGAGAGTAGTGATGCGGATTTGGTGAGGTTGAAGATCAGCTTGTTGGGTGATTGCCAGATTGGAAAGACAAGCTTTATGATTAAATATGTCGGGGATGAGCAAGAAGAACAAAGATTTTTGGAGATGACAGGAGTGAGCCTAATGGATAAAACACTGATGGTTCAAGATGCTCGGATTTCCTTTAGCCTTTGGGATGTTGGAGGCGATAGGAGTTCGCTTGGTCATGTTCCGATTGCCTGTAAAGATGCAGTGGCGATTCTGTTCATGTTTGATCTTACTAGTCGGTGCACACTCAATAGTGTCGTTGGATGGTACAGTGAAGCAAGAAAATGGAATCAGACAGCAATTCCCATACTAATTGGGACAAAGTTTGATGATTTTGTGAGACTCCCTCCAGATCTGCAATGGACAATAGTTACCCAGGCCAGGGCTTATGCAAAAGCTATGAATGCGACCCTTTTCTTCTCAAGTGCAACACACAACATCAATGTGAACAAGATTTTCAAGTTCATCTTGGCCAAGCTATTTAACTTGCCATGGAAGGTAGAGAGAAACTTGAATATTGGAGAGCCCATCATCGATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000910 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005815 GO:0005816 GO:0005856 GO:0007049 GO:0007088 GO:0007096 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007346 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010973 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022402 GO:0023052 GO:0031028 GO:0031991 GO:0032465 GO:0032467 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032954 GO:0032955 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044732 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0065007 GO:0070727 GO:0090068 GO:0097159 GO:0097367 GO:0110020 GO:1901265 GO:1901363 GO:1901891 GO:1901893 GO:1901987 GO:1901990 GO:1902412 GO:1903436 GO:1903438 GO:1903490

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Ras

Protein Analysis

284

Amino Acids

32.25

Weight (kDa)

9.23

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Roc	PF08477	99 - 186	1.7e-10	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	99 - 189	1.6e-09	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54840 AT5G54840 AT5G54840
fragaria_vesca	FvH4_3g22110 FvH4_3g22110 FvH4_3g22110 FvH4_3g22110
malus_domestica	MD03G1208300.v1.1 MD11G1222500.v1.1
prunus_persica	Prupe.4G208400_v2.0.a1
pyrus_communis	pycom03g15700 pycom11g19630
rosa_chinensis	RchiOBHm_Chr5g0037931
rosa_laevigata	RLG00000033825
rosa_roxburghii	Rroxscaffold_1G00042930
rosa_rugosa	Rorug05G0169800
rosa_samantha	Rh5AG257800 Rh5BG260700 Rh5CG293200 Rh5DG270100
rosa_wichuraiana	Rw5G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	174
AccB1I	GGYRCC	1 cut(s)	174
AccI	GTMKAC	1 cut(s)	200
AciI	CCGC	3 cut(s)	209, 212, 278
AcoI	YGGCCR	1 cut(s)	780
AcsI	RAATTY	1 cut(s)	138
AfaI	GTAC	2 cut(s)	176, 578
AfiI	CCNNNNNNNGG	2 cut(s)	690, 691
AgsI	TTSAA	4 cut(s)	295, 428, 769, 823
AhlI	ACTAGT	2 cut(s)	245, 542
AjnI	CCWGG	2 cut(s)	684, 689
AluBI	AGCT	5 cut(s)	23, 303, 336, 707, 787
AluI	AGCT	5 cut(s)	23, 303, 336, 707, 787
Alw21I	GWGCWC	1 cut(s)	554
Alw26I	GTCTC	2 cut(s)	103, 643
Alw44I	GTGCAC	1 cut(s)	550
AoxI	GGCC	2 cut(s)	687, 780
ApaLI	GTGCAC	1 cut(s)	550
ApoI	RAATTY	1 cut(s)	138
Asp718I	GGTACC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	298, 323
BaeGI	GKGCMC	1 cut(s)	554
BalI	TGGCCA	1 cut(s)	782
BanI	GGYRCC	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	837
BauI	CACGAG	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	554
BccI	CCATC	4 cut(s)	251, 415, 567, 845
BciT130I	CCWGG	2 cut(s)	686, 691
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	2 cut(s)	103, 643
BcuI	ACTAGT	2 cut(s)	245, 542
BfaI	CTAG	3 cut(s)	89, 246, 543
BfmI	CTRYAG	1 cut(s)	24
BglII	AGATCT	1 cut(s)	661
BisI	GCNGC	2 cut(s)	209, 212
BlsI	GCNGC	2 cut(s)	210, 213
Bme1390I	CCNGG	3 cut(s)	110, 686, 691
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	3 cut(s)	110, 686, 691
BmsI	GCATC	3 cut(s)	265, 421, 499
BplI	GAGNNNNNCTC	2 cut(s)	640, 672
BpmI	CTGGAG	1 cut(s)	642
BpuEI	CTTGAG	1 cut(s)	715
BpuMI	CCSGG	1 cut(s)	110
Bsa29I	ATCGAT	1 cut(s)	843
BsaAI	YACGTR	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	3 cut(s)	684, 690, 800
BsaWI	WCCGGW	4 cut(s)	75, 120, 171, 177
Bsc4I	CCNNNNNNNGG	2 cut(s)	690, 691
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	674
BseBI	CCWGG	2 cut(s)	686, 691
BseCI	ATCGAT	1 cut(s)	843
BseDI	CCNNGG	3 cut(s)	684, 690, 800
BseGI	GGATG	3 cut(s)	364, 463, 578
BseLI	CCNNNNNNNGG	2 cut(s)	690, 691
BseMI	GCAATG	1 cut(s)	674
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	207
BseSI	GKGCMC	1 cut(s)	554
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	689, 782
BshNI	GGYRCC	1 cut(s)	174
BshVI	ATCGAT	1 cut(s)	843
BsiEI	CGRYCG	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	554
BsiSI	CCGG	6 cut(s)	52, 76, 109, 121, 172, 178
BslFI	GGGAC	1 cut(s)	640
BslI	CCNNNNNNNGG	2 cut(s)	690, 691
BsmAI	GTCTC	2 cut(s)	103, 643
BsmFI	GGGAC	1 cut(s)	640
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	2 cut(s)	689, 782
Bso31I	GGTCTC	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	554, 837
Bsp143I	GATC	3 cut(s)	297, 535, 661
Bsp19I	CCATGG	1 cut(s)	800
BspACI	CCGC	3 cut(s)	209, 212, 278
BspANI	GGCC	2 cut(s)	689, 782
BspDI	ATCGAT	1 cut(s)	843
BspLI	GGNNCC	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	674
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	3 cut(s)	684, 690, 800
BssMI	GATC	3 cut(s)	297, 535, 661
BssSI	CACGAG	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	800
Bst2BI	CACGAG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	686, 691
Bst4CI	ACNGT	1 cut(s)	581
BstBAI	YACGTR	1 cut(s)	17
BstDSI	CCRYGG	1 cut(s)	800
BstF5I	GGATG	3 cut(s)	364, 463, 578
BstKTI	GATC	3 cut(s)	300, 538, 664
BstMAI	GTCTC	2 cut(s)	103, 643
BstMBI	GATC	3 cut(s)	297, 535, 661
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	713
BstNI	CCWGG	2 cut(s)	686, 691
BstSCI	CCNGG	3 cut(s)	108, 684, 689
BstSFI	CTRYAG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	554
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
Bsu15I	ATCGAT	1 cut(s)	843
BsuRI	GGCC	2 cut(s)	689, 782
BsuTUI	ATCGAT	1 cut(s)	843
BtgI	CCRYGG	1 cut(s)	800
BtsCI	GGATG	3 cut(s)	364, 463, 578
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	3 cut(s)	416, 519, 586
ClaI	ATCGAT	1 cut(s)	843
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	175, 577
CviAII	CATG	3 cut(s)	488, 529, 801
CviQI	GTAC	2 cut(s)	175, 577
DpnI	GATC	3 cut(s)	299, 537, 663
DpnII	GATC	3 cut(s)	297, 535, 661
EaeI	YGGCCR	1 cut(s)	780
Eco130I	CCWWGG	1 cut(s)	800
Eco24I	GRGCYC	1 cut(s)	837
Eco31I	GGTCTC	1 cut(s)	103
EcoRII	CCWGG	2 cut(s)	684, 689
EcoT14I	CCWWGG	1 cut(s)	800
EcoT38I	GRGCYC	1 cut(s)	837
ErhI	CCWWGG	1 cut(s)	800
FaeI	CATG	3 cut(s)	491, 532, 804
FalI	AAGNNNNNCTT	6 cut(s)	287, 319, 320, 352, 761, 793
FaqI	GGGAC	1 cut(s)	640
FatI	CATG	3 cut(s)	487, 528, 800
FblI	GTMKAC	1 cut(s)	200
Fnu4HI	GCNGC	2 cut(s)	209, 212
FokI	GGATG	3 cut(s)	371, 470, 585
FriOI	GRGCYC	1 cut(s)	837
Fsp4HI	GCNGC	2 cut(s)	209, 212
FspBI	CTAG	3 cut(s)	89, 246, 543
GluI	GCNGC	2 cut(s)	209, 212
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	2 cut(s)	689, 782
HapII	CCGG	6 cut(s)	52, 76, 109, 121, 172, 178
HgaI	GACGC	1 cut(s)	46
Hin1II	CATG	3 cut(s)	491, 532, 804
HindIII	AAGCTT	1 cut(s)	334
HinfI	GANTC	4 cut(s)	168, 520, 598, 651
HpaII	CCGG	6 cut(s)	52, 76, 109, 121, 172, 178
HphI	GGTGA	2 cut(s)	298, 323
Hpy166II	GTNNAC	4 cut(s)	64, 201, 552, 757
Hpy188I	TCNGA	3 cut(s)	438, 495, 603
Hpy188III	TCNNGA	6 cut(s)	89, 100, 157, 189, 428, 659
Hpy8I	GTNNAC	4 cut(s)	64, 201, 552, 757
Hpy99I	CGWCG	2 cut(s)	208, 244
HpyAV	CCTTC	1 cut(s)	799
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4IV	ACGT	2 cut(s)	16, 203
HpyCH4V	TGCA	5 cut(s)	512, 552, 667, 701, 737
HpyF10VI	GCNNNNNNNGC	1 cut(s)	713
HpySE526I	ACGT	2 cut(s)	16, 203
Hsp92II	CATG	3 cut(s)	491, 532, 804
KpnI	GGTACC	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	297, 535, 661
LweI	GCATC	3 cut(s)	265, 421, 499
MaeI	CTAG	3 cut(s)	89, 246, 543
MaeII	ACGT	2 cut(s)	16, 203
MaeIII	GTNAC	2 cut(s)	186, 679
MalI	GATC	3 cut(s)	299, 537, 663
MboI	GATC	3 cut(s)	297, 535, 661
MboII	GAAGA	3 cut(s)	307, 380, 718
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	2 cut(s)	554, 837
MlsI	TGGCCA	1 cut(s)	782
MluCI	AATT	3 cut(s)	138, 609, 621
MluNI	TGGCCA	1 cut(s)	782
MlyI	GAGTC	1 cut(s)	645
MmeI	TCCRAC	2 cut(s)	442, 550
MnlI	CCTC	7 cut(s)	185, 188, 211, 220, 282, 458, 666
Mox20I	TGGCCA	1 cut(s)	782
MscI	TGGCCA	1 cut(s)	782
MseI	TTAA	2 cut(s)	345, 792
MslI	CAYNNNNRTG	1 cut(s)	752
Msp20I	TGGCCA	1 cut(s)	782
MspI	CCGG	6 cut(s)	52, 76, 109, 121, 172, 178
MspR9I	CCNGG	3 cut(s)	110, 686, 691
Mva1269I	GAATGC	1 cut(s)	718
MvaI	CCWGG	2 cut(s)	686, 691
MwoI	GCNNNNNNNGC	1 cut(s)	713
NciI	CCSGG	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	800
NdeII	GATC	3 cut(s)	297, 535, 661
NlaIII	CATG	3 cut(s)	491, 532, 804
NlaIV	GGNNCC	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	186
PctI	GAATGC	1 cut(s)	718
PfeI	GAWTC	3 cut(s)	168, 520, 598
PflFI	GACNNNGTC	1 cut(s)	95
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	210, 213
PleI	GAGTC	1 cut(s)	645
PpsI	GAGTC	1 cut(s)	645
Ppu21I	YACGTR	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	684, 689
PspGI	CCWGG	2 cut(s)	684, 689
PspN4I	GGNNCC	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	661
PsyI	GACNNNGTC	1 cut(s)	95
RsaI	GTAC	2 cut(s)	176, 578
RsaNI	GTAC	2 cut(s)	175, 577
RseI	CAYNNNNRTG	1 cut(s)	752
SaqAI	TTAA	2 cut(s)	345, 792
SatI	GCNGC	2 cut(s)	209, 212
Sau3AI	GATC	3 cut(s)	297, 535, 661
SchI	GAGTC	1 cut(s)	645
ScrFI	CCNGG	3 cut(s)	110, 686, 691
SduI	GDGCHC	2 cut(s)	554, 837
SetI	ASST	9 cut(s)	19, 25, 206, 293, 305, 338, 709, 789, 810
SfaNI	GCATC	3 cut(s)	265, 421, 499
SfcI	CTRYAG	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	752
SmlI	CTYRAG	1 cut(s)	730
SmoI	CTYRAG	1 cut(s)	730
SpeI	ACTAGT	2 cut(s)	245, 542
Sse9I	AATT	3 cut(s)	138, 609, 621
SsiI	CCGC	3 cut(s)	209, 212, 278
SspI	AATATT	1 cut(s)	826
SspMI	CTAG	3 cut(s)	89, 246, 543
StyD4I	CCNGG	3 cut(s)	108, 684, 689
StyI	CCWWGG	1 cut(s)	800
TaaI	ACNGT	1 cut(s)	581
TaiI	ACGT	2 cut(s)	19, 206
TaqI	TCGA	2 cut(s)	101, 843
TaqII	GACCGA	1 cut(s)	142
TasI	AATT	3 cut(s)	138, 609, 621
TauI	GCSGC	2 cut(s)	211, 214
TfiI	GAWTC	3 cut(s)	168, 520, 598
Tru1I	TTAA	2 cut(s)	345, 792
Tru9I	TTAA	2 cut(s)	345, 792
TscAI	CASTG	3 cut(s)	423, 519, 586
TseFI	GTSAC	1 cut(s)	186
Tsp45I	GTSAC	1 cut(s)	186
TspDTI	ATGAA	4 cut(s)	115, 517, 725, 763
TspRI	CASTG	3 cut(s)	423, 519, 586
Tth111I	GACNNNGTC	1 cut(s)	95
VneI	GTGCAC	1 cut(s)	550
XapI	RAATTY	1 cut(s)	138
XbaI	TCTAGA	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	666
XmiI	GTMKAC	1 cut(s)	200
XspI	CTAG	3 cut(s)	89, 246, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.