Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009906

Physical Location & Seq

Genomic Coordinates Reverse (-)

32859219 .. 32862029

Gene Structure 2811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG270100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCCAGAAGTATACGTGAAGCTATTGCAAAGATGACGCAACTGGTTTGCCGGAAAATAGTTCACATAAACTTCCGGTGGAGTGTTCTAGACAGGGTTTCGATTATCCGGGAGTTTTTCCGGTTCATTTGGGATAAAATTCTTGTCTGTTCGGTCGGGAGGCAAAGAATCCGGTACCGGAGATTGACAAGAGGAGAGTCTTCGTCGCCGCAGCCGGAGGCCATAGAAGCGGCTTTGCCGACGACGAGTAGCTATGAGAGTACGGATGAGGATTTGGTGAGGTTGAAGATCAGTTTGTTGGGTGATTGCCAGATTGGAAAGACAAGCTTTATGATTAAATATATTGGGGATGAGCAAGAAGAACAAAGATGTTTGGAGATGACAGGAGTGAGTTTAATGGATAAAACATTGATGGTTCAAGGTGCTCGGATTTCCTGTAGTCTTTGGGACGTTGGAGGCGATAGGAGTTCGCTGGATCATGTTCCGATTGCCTGTAAAGATGCAGTGGCGATTCTGTTCATGTTTGATCTTACTAGTCGGTGTACACTCAATAGTGTCGTTGGATGGTACAGTGAAGCAAGAAAATGGAATCAGGTACTAAAAATTACTGCAAATTTGGAAATCAATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000910 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005815 GO:0005816 GO:0005856 GO:0007049 GO:0007088 GO:0007096 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007346 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010973 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022402 GO:0023052 GO:0031028 GO:0031991 GO:0032465 GO:0032467 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032954 GO:0032955 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044732 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0065007 GO:0070727 GO:0090068 GO:0097159 GO:0097367 GO:0110020 GO:1901265 GO:1901363 GO:1901891 GO:1901893 GO:1901987 GO:1901990 GO:1902412 GO:1903436 GO:1903438 GO:1903490

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Ras

Protein Analysis

210

Amino Acids

24.07

Weight (kDa)

8.69

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Roc	PF08477	96 - 198	1e-11	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	96 - 198	1.6e-11	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54840 AT5G54840 AT5G54840
fragaria_vesca	FvH4_3g22110 FvH4_3g22110 FvH4_3g22110 FvH4_3g22110
malus_domestica	MD03G1208300.v1.1 MD11G1222500.v1.1
prunus_persica	Prupe.4G208400_v2.0.a1
pyrus_communis	pycom03g15700 pycom11g19630
rosa_chinensis	RchiOBHm_Chr5g0037931
rosa_laevigata	RLG00000033825
rosa_roxburghii	Rroxscaffold_1G00042930
rosa_rugosa	Rorug05G0169800
rosa_samantha	Rh5AG257800 Rh5BG260700 Rh5CG293200 Rh5DG270100
rosa_wichuraiana	Rw5G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	174
AccB1I	GGYRCC	1 cut(s)	174
AccI	GTMKAC	1 cut(s)	13
AciI	CCGC	2 cut(s)	209, 230
AclWI	GGATC	1 cut(s)	483
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	138, 613
AfaI	GTAC	5 cut(s)	176, 262, 544, 569, 597
AgsI	TTSAA	2 cut(s)	286, 419
AhlI	ACTAGT	1 cut(s)	533
AluBI	AGCT	3 cut(s)	23, 252, 327
AluI	AGCT	3 cut(s)	23, 252, 327
Alw21I	GWGCWC	1 cut(s)	427
AlwI	GGATC	1 cut(s)	483
AoxI	GGCC	2 cut(s)	3, 219
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	2 cut(s)	138, 613
Asp718I	GGTACC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	289, 314
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	2 cut(s)	406, 558
BcnI	CCSGG	1 cut(s)	110
BcuI	ACTAGT	1 cut(s)	533
BfaI	CTAG	3 cut(s)	89, 534, 631
BfmI	CTRYAG	1 cut(s)	436
BisI	GCNGC	3 cut(s)	209, 212, 231
BlsI	GCNGC	3 cut(s)	210, 213, 232
Bme1390I	CCNGG	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	490
BpiI	GAAGAC	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	110
BsaAI	YACGTR	1 cut(s)	17
BsaWI	WCCGGW	4 cut(s)	75, 120, 171, 177
Bse1I	ACTGG	1 cut(s)	48
BseGI	GGATG	3 cut(s)	271, 355, 569
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	5, 221
BshNI	GGYRCC	1 cut(s)	174
BsiEI	CGRYCG	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	427
BsiSI	CCGG	7 cut(s)	52, 76, 109, 121, 172, 178, 215
BslFI	GGGAC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	2 cut(s)	5, 221
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp1407I	TGTACA	1 cut(s)	542
Bsp143I	GATC	3 cut(s)	288, 475, 526
BspACI	CCGC	2 cut(s)	209, 230
BspANI	GGCC	2 cut(s)	5, 221
BspLI	GGNNCC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	483
BspT107I	GGYRCC	1 cut(s)	174
BsrGI	TGTACA	1 cut(s)	542
BsrI	ACTGG	1 cut(s)	48
BssMI	GATC	3 cut(s)	288, 475, 526
BssNAI	GTATAC	1 cut(s)	14
Bst1107I	GTATAC	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	572
BstAUI	TGTACA	1 cut(s)	542
BstBAI	YACGTR	1 cut(s)	17
BstF5I	GGATG	3 cut(s)	271, 355, 569
BstKTI	GATC	3 cut(s)	291, 478, 529
BstMBI	GATC	3 cut(s)	288, 475, 526
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	192
BstZ17I	GTATAC	1 cut(s)	14
BsuRI	GGCC	2 cut(s)	5, 221
BtsCI	GGATG	3 cut(s)	271, 355, 569
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	2 cut(s)	510, 577
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	5 cut(s)	175, 261, 543, 568, 596
CviAII	CATG	2 cut(s)	479, 520
CviJI	RGCY	7 cut(s)	5, 23, 214, 221, 233, 252, 327
CviKI_1	RGCY	7 cut(s)	5, 23, 214, 221, 233, 252, 327
CviQI	GTAC	5 cut(s)	175, 261, 543, 568, 596
DpnI	GATC	3 cut(s)	290, 477, 528
DpnII	GATC	3 cut(s)	288, 475, 526
EaeI	YGGCCR	1 cut(s)	3
FaeI	CATG	2 cut(s)	482, 523
FaiI	YATR	8 cut(s)	14, 68, 224, 255, 332, 342, 480, 521
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	2 cut(s)	478, 519
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	3 cut(s)	209, 212, 231
FokI	GGATG	3 cut(s)	278, 362, 576
Fsp4HI	GCNGC	3 cut(s)	209, 212, 231
FspBI	CTAG	3 cut(s)	89, 534, 631
GluI	GCNGC	3 cut(s)	209, 212, 231
HaeIII	GGCC	2 cut(s)	5, 221
HapII	CCGG	7 cut(s)	52, 76, 109, 121, 172, 178, 215
HgaI	GACGC	1 cut(s)	46
Hin1II	CATG	2 cut(s)	482, 523
HindIII	AAGCTT	1 cut(s)	325
HinfI	GANTC	4 cut(s)	168, 197, 511, 589
HpaII	CCGG	7 cut(s)	52, 76, 109, 121, 172, 178, 215
HphI	GGTGA	2 cut(s)	289, 314
Hpy166II	GTNNAC	4 cut(s)	14, 64, 543, 545
Hpy188I	TCNGA	2 cut(s)	429, 486
Hpy188III	TCNNGA	2 cut(s)	89, 157
Hpy8I	GTNNAC	4 cut(s)	14, 64, 543, 545
Hpy99I	CGWCG	3 cut(s)	208, 244, 247
HpyCH4III	ACNGT	1 cut(s)	572
HpyCH4IV	ACGT	2 cut(s)	16, 450
HpyCH4V	TGCA	3 cut(s)	29, 503, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpySE526I	ACGT	2 cut(s)	16, 450
Hsp92II	CATG	2 cut(s)	482, 523
KpnI	GGTACC	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	288, 475, 526
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	3 cut(s)	89, 534, 631
MaeII	ACGT	2 cut(s)	16, 450
MalI	GATC	3 cut(s)	290, 477, 528
MboI	GATC	3 cut(s)	288, 475, 526
MboII	GAAGA	3 cut(s)	192, 298, 371
MhlI	GDGCHC	1 cut(s)	427
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	138, 603, 613, 625
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	2 cut(s)	433, 541
MnlI	CCTC	6 cut(s)	153, 185, 211, 262, 273, 449
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	336, 395
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	7 cut(s)	52, 76, 109, 121, 172, 178, 215
MspR9I	CCNGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	227
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	3 cut(s)	288, 475, 526
NlaIII	CATG	2 cut(s)	482, 523
NlaIV	GGNNCC	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PfeI	GAWTC	3 cut(s)	168, 511, 589
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	3 cut(s)	210, 213, 232
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Ppu21I	YACGTR	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	176
RsaI	GTAC	5 cut(s)	176, 262, 544, 569, 597
RsaNI	GTAC	5 cut(s)	175, 261, 543, 568, 596
SaqAI	TTAA	2 cut(s)	336, 395
SatI	GCNGC	3 cut(s)	209, 212, 231
Sau3AI	GATC	3 cut(s)	288, 475, 526
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	8 cut(s)	19, 25, 254, 284, 329, 424, 453, 597
SfaNI	GCATC	1 cut(s)	490
SfcI	CTRYAG	1 cut(s)	436
SpeI	ACTAGT	1 cut(s)	533
Sse9I	AATT	4 cut(s)	138, 603, 613, 625
SsiI	CCGC	2 cut(s)	209, 230
SspMI	CTAG	3 cut(s)	89, 534, 631
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	572
TaiI	ACGT	2 cut(s)	19, 453
TaqI	TCGA	1 cut(s)	101
TaqII	GACCGA	1 cut(s)	142
TasI	AATT	4 cut(s)	138, 603, 613, 625
TatI	WGTACW	1 cut(s)	542
TauI	GCSGC	2 cut(s)	211, 233
TfiI	GAWTC	3 cut(s)	168, 511, 589
Tru1I	TTAA	2 cut(s)	336, 395
Tru9I	TTAA	2 cut(s)	336, 395
TscAI	CASTG	2 cut(s)	510, 577
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	115, 508
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	2 cut(s)	510, 577
XapI	RAATTY	2 cut(s)	138, 613
XbaI	TCTAGA	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	13
XspI	CTAG	3 cut(s)	89, 534, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.