Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009906

Physical Location & Seq

Genomic Coordinates Reverse (-)

32703786 .. 32705652

Gene Structure 1867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033825

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCCAGAAGTATACGTGAAGCTATTGCAAAGATGACGCAACTGGTTTGCCGGAAAATTGTTCACATAAACTTCCGGTGGAGTGTTCTAGACAGGGTTTCGATTATCAGGGAGTTTTTCCGGTTCATTTGGGATAAAATTCTTGTTTGTTCGGTCGGGAGGCAAAGAATCCGGTACCGGAGATTGGCAAGAGGAGAGTCTTCGTCGCCGCCGCCGGAGGCCATAGAAGCGGCTTTGCCGGCGACGAGTAGTTATGAGAGTACGGATGAGGATTTGGTGAGGTTGAAGATCAGTTTGTTGGGTGATTGCCAGATTGGAAAGACAAGCTTTATGATTAAATATGTTGGGGATGAGCAAGAAGAACAAAGATGTTTGGAGATGACAGGAGTGAGTTTAATGGATAAAACATTGATGGTTCAAGGTGCTCGGATTTCCTGTAGTCTTTGGGACGTTGGAGGCGATAGGAATTCGCTGGATCATGTTCCGATTGCCTGTAAAGATGCAGTGGCGATTCTGTTCATGTTTGATCTTACTAGTCGGTGCACGCTCAATAGTGTCGTTGGATGGTACAGTGAAGCAAGAAAATGGAATCAGACTGCAATTCCCATACTAATTGGGACAAAATTTGATGATTTTGTGAGACTTCCTCCAGATCTGCAATGGACAATTATTACCCAGGCGAGGGCTTATGCAAAAGCTATGAAGGCGACCCTTTTCTTCTCAAGTGCAACCCACAACATCAATGTGAACAAGATCTTCAAATTCATCTTGGCCAAGCTGTTTAACTTGCCATGGAAGGTAGAGAGAAATTTGAATATTGGGGAGCCCATCATCGATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000910 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005815 GO:0005816 GO:0005856 GO:0007049 GO:0007088 GO:0007096 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007346 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010973 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022402 GO:0023052 GO:0031028 GO:0031991 GO:0032465 GO:0032467 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032954 GO:0032955 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044732 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0065007 GO:0070727 GO:0090068 GO:0097159 GO:0097367 GO:0110020 GO:1901265 GO:1901363 GO:1901891 GO:1901893 GO:1901987 GO:1901990 GO:1902412 GO:1903436 GO:1903438 GO:1903490

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Ras

Protein Analysis

281

Amino Acids

32.04

Weight (kDa)

9.17

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	96 - 260	2.8e-19	Ras family
Roc	PF08477	96 - 210	7.8e-15	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54840 AT5G54840 AT5G54840
fragaria_vesca	FvH4_3g22110 FvH4_3g22110 FvH4_3g22110 FvH4_3g22110
malus_domestica	MD03G1208300.v1.1 MD11G1222500.v1.1
prunus_persica	Prupe.4G208400_v2.0.a1
pyrus_communis	pycom03g15700 pycom11g19630
rosa_chinensis	RchiOBHm_Chr5g0037931
rosa_laevigata	RLG00000033825
rosa_roxburghii	Rroxscaffold_1G00042930
rosa_rugosa	Rorug05G0169800
rosa_samantha	Rh5AG257800 Rh5BG260700 Rh5CG293200 Rh5DG270100
rosa_wichuraiana	Rw5G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	174
AccB1I	GGYRCC	1 cut(s)	174
AccI	GTMKAC	1 cut(s)	13
AciI	CCGC	3 cut(s)	209, 212, 230
AclWI	GGATC	1 cut(s)	483
AcoI	YGGCCR	2 cut(s)	3, 771
AcsI	RAATTY	5 cut(s)	138, 466, 623, 761, 808
AfaI	GTAC	3 cut(s)	176, 262, 569
AfiI	CCNNNNNNNGG	3 cut(s)	184, 681, 682
AgsI	TTSAA	4 cut(s)	286, 419, 760, 814
AhlI	ACTAGT	1 cut(s)	533
AjnI	CCWGG	1 cut(s)	675
AluBI	AGCT	4 cut(s)	23, 327, 698, 778
AluI	AGCT	4 cut(s)	23, 327, 698, 778
Alw21I	GWGCWC	2 cut(s)	427, 545
Alw26I	GTCTC	1 cut(s)	634
Alw44I	GTGCAC	1 cut(s)	541
AlwI	GGATC	1 cut(s)	483
AoxI	GGCC	3 cut(s)	3, 219, 771
ApaLI	GTGCAC	1 cut(s)	541
ApoI	RAATTY	5 cut(s)	138, 466, 623, 761, 808
Asp718I	GGTACC	1 cut(s)	174
AsuHPI	GGTGA	2 cut(s)	289, 314
BaeGI	GKGCMC	1 cut(s)	545
BalI	TGGCCA	2 cut(s)	5, 773
BanI	GGYRCC	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	828
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	2 cut(s)	427, 545
BccI	CCATC	3 cut(s)	406, 558, 836
BciT130I	CCWGG	1 cut(s)	677
BcoDI	GTCTC	1 cut(s)	634
BcuI	ACTAGT	1 cut(s)	533
BfaI	CTAG	2 cut(s)	89, 534
BfmI	CTRYAG	1 cut(s)	436
BglII	AGATCT	2 cut(s)	652, 753
BisI	GCNGC	3 cut(s)	209, 212, 231
BlsI	GCNGC	3 cut(s)	210, 213, 232
Bme1390I	CCNGG	1 cut(s)	677
BmiI	GGNNCC	2 cut(s)	176, 825
BmrFI	CCNGG	1 cut(s)	677
BmsI	GCATC	1 cut(s)	490
BpiI	GAAGAC	1 cut(s)	192
BplI	GAGNNNNNCTC	2 cut(s)	631, 663
BpmI	CTGGAG	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	706
Bsa29I	ATCGAT	1 cut(s)	834
BsaAI	YACGTR	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	675, 791
BsaWI	WCCGGW	4 cut(s)	75, 120, 171, 177
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 681, 682
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	665
BseBI	CCWGG	1 cut(s)	677
BseCI	ATCGAT	1 cut(s)	834
BseDI	CCNNGG	2 cut(s)	675, 791
BseGI	GGATG	3 cut(s)	271, 355, 569
BseLI	CCNNNNNNNGG	3 cut(s)	184, 681, 682
BseMI	GCAATG	1 cut(s)	665
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	207
BseSI	GKGCMC	1 cut(s)	545
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	5, 221, 773
BshNI	GGYRCC	1 cut(s)	174
BshVI	ATCGAT	1 cut(s)	834
BsiEI	CGRYCG	1 cut(s)	156
BsiHKAI	GWGCWC	2 cut(s)	427, 545
BsiSI	CCGG	7 cut(s)	52, 76, 121, 172, 178, 215, 239
BslFI	GGGAC	2 cut(s)	461, 631
BslI	CCNNNNNNNGG	3 cut(s)	184, 681, 682
BsmAI	GTCTC	1 cut(s)	634
BsmFI	GGGAC	2 cut(s)	461, 631
BsnI	GGCC	3 cut(s)	5, 221, 773
Bsp1286I	GDGCHC	3 cut(s)	427, 545, 828
Bsp143I	GATC	5 cut(s)	288, 475, 526, 652, 753
Bsp19I	CCATGG	1 cut(s)	791
BspACI	CCGC	3 cut(s)	209, 212, 230
BspANI	GGCC	3 cut(s)	5, 221, 773
BspDI	ATCGAT	1 cut(s)	834
BspLI	GGNNCC	2 cut(s)	176, 825
BspPI	GGATC	1 cut(s)	483
BspT107I	GGYRCC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	665
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	48
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	675, 791
BssMI	GATC	5 cut(s)	288, 475, 526, 652, 753
BssNAI	GTATAC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	791
Bst1107I	GTATAC	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	677
Bst4CI	ACNGT	1 cut(s)	572
BstBAI	YACGTR	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	240, 545
BstDSI	CCRYGG	1 cut(s)	791
BstF5I	GGATG	3 cut(s)	271, 355, 569
BstKTI	GATC	5 cut(s)	291, 478, 529, 655, 756
BstMAI	GTCTC	1 cut(s)	634
BstMBI	GATC	5 cut(s)	288, 475, 526, 652, 753
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 239, 704
BstNI	CCWGG	1 cut(s)	677
BstSCI	CCNGG	1 cut(s)	675
BstSFI	CTRYAG	1 cut(s)	436
BstSLI	GKGCMC	1 cut(s)	545
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	2 cut(s)	652, 753
BstYI	RGATCY	2 cut(s)	652, 753
BstZ17I	GTATAC	1 cut(s)	14
Bsu15I	ATCGAT	1 cut(s)	834
BsuRI	GGCC	3 cut(s)	5, 221, 773
BsuTUI	ATCGAT	1 cut(s)	834
BtgI	CCRYGG	1 cut(s)	791
BtsCI	GGATG	3 cut(s)	271, 355, 569
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	2 cut(s)	510, 577
Cac8I	GCNNGC	2 cut(s)	240, 545
Cfr10I	RCCGGY	1 cut(s)	238
ClaI	ATCGAT	1 cut(s)	834
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	175, 261, 568
CviAII	CATG	3 cut(s)	479, 520, 792
CviQI	GTAC	3 cut(s)	175, 261, 568
DpnI	GATC	5 cut(s)	290, 477, 528, 654, 755
DpnII	GATC	5 cut(s)	288, 475, 526, 652, 753
EaeI	YGGCCR	2 cut(s)	3, 771
Eco130I	CCWWGG	1 cut(s)	791
Eco24I	GRGCYC	1 cut(s)	828
EcoRI	GAATTC	1 cut(s)	466
EcoRII	CCWGG	1 cut(s)	675
EcoT14I	CCWWGG	1 cut(s)	791
EcoT38I	GRGCYC	1 cut(s)	828
ErhI	CCWWGG	1 cut(s)	791
FaeI	CATG	3 cut(s)	482, 523, 795
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	2 cut(s)	461, 631
FatI	CATG	3 cut(s)	478, 519, 791
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	3 cut(s)	209, 212, 231
FokI	GGATG	3 cut(s)	278, 362, 576
FriOI	GRGCYC	1 cut(s)	828
Fsp4HI	GCNGC	3 cut(s)	209, 212, 231
FspBI	CTAG	2 cut(s)	89, 534
GluI	GCNGC	3 cut(s)	209, 212, 231
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	3 cut(s)	5, 221, 773
HapII	CCGG	7 cut(s)	52, 76, 121, 172, 178, 215, 239
HgaI	GACGC	1 cut(s)	46
Hin1II	CATG	3 cut(s)	482, 523, 795
HindIII	AAGCTT	1 cut(s)	325
HinfI	GANTC	4 cut(s)	168, 197, 511, 589
HpaII	CCGG	7 cut(s)	52, 76, 121, 172, 178, 215, 239
HphI	GGTGA	2 cut(s)	289, 314
Hpy166II	GTNNAC	4 cut(s)	14, 64, 543, 748
Hpy188I	TCNGA	3 cut(s)	429, 486, 594
Hpy188III	TCNNGA	3 cut(s)	89, 157, 650
Hpy8I	GTNNAC	4 cut(s)	14, 64, 543, 748
Hpy99I	CGWCG	2 cut(s)	208, 247
HpyAV	CCTTC	2 cut(s)	697, 790
HpyCH4III	ACNGT	1 cut(s)	572
HpyCH4IV	ACGT	2 cut(s)	16, 450
HpyCH4V	TGCA	7 cut(s)	29, 503, 543, 599, 658, 692, 728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 239, 704
HpySE526I	ACGT	2 cut(s)	16, 450
Hsp92II	CATG	3 cut(s)	482, 523, 795
KpnI	GGTACC	1 cut(s)	178
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Kzo9I	GATC	5 cut(s)	288, 475, 526, 652, 753
LmnI	GCTCC	1 cut(s)	823
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	2 cut(s)	89, 534
MaeII	ACGT	2 cut(s)	16, 450
MalI	GATC	5 cut(s)	290, 477, 528, 654, 755
MboI	GATC	5 cut(s)	288, 475, 526, 652, 753
MboII	GAAGA	5 cut(s)	192, 298, 371, 709, 748
MflI	RGATCY	2 cut(s)	652, 753
MhlI	GDGCHC	3 cut(s)	427, 545, 828
MlsI	TGGCCA	2 cut(s)	5, 773
MluCI	AATT	9 cut(s)	57, 138, 466, 600, 612, 623, 666, 761, 808
MluNI	TGGCCA	2 cut(s)	5, 773
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	2 cut(s)	433, 541
MnlI	CCTC	8 cut(s)	153, 185, 211, 262, 273, 449, 657, 675
Mox20I	TGGCCA	2 cut(s)	5, 773
MroNI	GCCGGC	1 cut(s)	238
MscI	TGGCCA	2 cut(s)	5, 773
MseI	TTAA	3 cut(s)	336, 395, 783
MslI	CAYNNNNRTG	1 cut(s)	743
Msp20I	TGGCCA	2 cut(s)	5, 773
MspI	CCGG	7 cut(s)	52, 76, 121, 172, 178, 215, 239
MspR9I	CCNGG	1 cut(s)	677
MvaI	CCWGG	1 cut(s)	677
MwoI	GCNNNNNNNGC	3 cut(s)	227, 239, 704
NaeI	GCCGGC	1 cut(s)	240
NcoI	CCATGG	1 cut(s)	791
NdeII	GATC	5 cut(s)	288, 475, 526, 652, 753
NgoMIV	GCCGGC	1 cut(s)	238
NlaIII	CATG	3 cut(s)	482, 523, 795
NlaIV	GGNNCC	2 cut(s)	176, 825
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PdiI	GCCGGC	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	168, 511, 589
PkrI	GCNGC	3 cut(s)	210, 213, 232
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Ppu21I	YACGTR	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	675
PspGI	CCWGG	1 cut(s)	675
PspN4I	GGNNCC	2 cut(s)	176, 825
PsuI	RGATCY	2 cut(s)	652, 753
RsaI	GTAC	3 cut(s)	176, 262, 569
RsaNI	GTAC	3 cut(s)	175, 261, 568
RseI	CAYNNNNRTG	1 cut(s)	743
SaqAI	TTAA	3 cut(s)	336, 395, 783
SatI	GCNGC	3 cut(s)	209, 212, 231
Sau3AI	GATC	5 cut(s)	288, 475, 526, 652, 753
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	677
SduI	GDGCHC	3 cut(s)	427, 545, 828
SetI	ASST	9 cut(s)	19, 25, 284, 329, 424, 453, 700, 780, 801
SfaNI	GCATC	1 cut(s)	490
SfcI	CTRYAG	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	743
SmlI	CTYRAG	1 cut(s)	721
SmoI	CTYRAG	1 cut(s)	721
SpeI	ACTAGT	1 cut(s)	533
Sse9I	AATT	9 cut(s)	57, 138, 466, 600, 612, 623, 666, 761, 808
SsiI	CCGC	3 cut(s)	209, 212, 230
SspI	AATATT	1 cut(s)	817
SspMI	CTAG	2 cut(s)	89, 534
StyD4I	CCNGG	1 cut(s)	675
StyI	CCWWGG	1 cut(s)	791
TaaI	ACNGT	1 cut(s)	572
TaiI	ACGT	2 cut(s)	19, 453
TaqI	TCGA	2 cut(s)	101, 834
TaqII	GACCGA	1 cut(s)	142
TasI	AATT	9 cut(s)	57, 138, 466, 600, 612, 623, 666, 761, 808
TauI	GCSGC	3 cut(s)	211, 214, 233
TfiI	GAWTC	3 cut(s)	168, 511, 589
Tru1I	TTAA	3 cut(s)	336, 395, 783
Tru9I	TTAA	3 cut(s)	336, 395, 783
TscAI	CASTG	2 cut(s)	510, 577
TspDTI	ATGAA	4 cut(s)	115, 508, 716, 754
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	2 cut(s)	510, 577
VneI	GTGCAC	1 cut(s)	541
XapI	RAATTY	5 cut(s)	138, 466, 623, 761, 808
XbaI	TCTAGA	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	657
XmiI	GTMKAC	1 cut(s)	13
XspI	CTAG	2 cut(s)	89, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.