Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009906

Physical Location & Seq

Genomic Coordinates Forward (+)

16938491 .. 16939171

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGACACAGCTTTGTCGAAAAATTGTTCACGTTAATTTTAGGTGGTGCATAGTCGACCGGGTTCCGGTTATCCGGGAGTTTTTCAGATTCATCTGGGACAGGTTTCTTGTTTGTTCGATAGGGAAACCGGCGGTCAGGTACCGGAGATTGCCCCTCGGAGCTTTCTCGCCGCCACCGGAAGTTTTGGAGGGTGTTTTGGCGGTGGACAACCCCACAAGTAGTAGTCTTAACGTGTATGAGACAGATGCGGATTTGGTGAGCTTGAAGATCAGTTTGCTGGGTGATTGCCAGATTGGAAAGACAAGTTTTATGAGCAAATATGTTGGGCATGAGCAAGAACATAGCTATCTGCAGATGGCTGGAGTAAATTTAATGGATAAAACATTGATTGTTCAAGGCGCTCGGATTTCGTTTAGCATGTGGGATGTGGGAGGCAACCAGAGTTCGATAGATCGATGTTCCAATCGCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000910 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005815 GO:0005816 GO:0005856 GO:0007049 GO:0007088 GO:0007096 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007346 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010973 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022402 GO:0023052 GO:0031028 GO:0031991 GO:0032465 GO:0032467 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032954 GO:0032955 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044732 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0065007 GO:0070727 GO:0090068 GO:0097159 GO:0097367 GO:0110020 GO:1901265 GO:1901363 GO:1901891 GO:1901893 GO:1901987 GO:1901990 GO:1902412 GO:1903436 GO:1903438 GO:1903490

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Ras

Protein Analysis

158

Amino Acids

17.8

Weight (kDa)

8.66

Isoelectric Point (pI)

26.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54840 AT5G54840 AT5G54840
fragaria_vesca	FvH4_3g22110 FvH4_3g22110 FvH4_3g22110 FvH4_3g22110
malus_domestica	MD03G1208300.v1.1 MD11G1222500.v1.1
prunus_persica	Prupe.4G208400_v2.0.a1
pyrus_communis	pycom03g15700 pycom11g19630
rosa_chinensis	RchiOBHm_Chr5g0037931
rosa_laevigata	RLG00000033825
rosa_roxburghii	Rroxscaffold_1G00042930
rosa_rugosa	Rorug05G0169800
rosa_samantha	Rh5AG257800 Rh5BG260700 Rh5CG293200 Rh5DG270100
rosa_wichuraiana	Rw5G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	138
AccB1I	GGYRCC	1 cut(s)	138
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	4 cut(s)	131, 170, 200, 248
AcsI	RAATTY	1 cut(s)	367
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	64
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	2 cut(s)	265, 395
AluBI	AGCT	4 cut(s)	10, 161, 261, 345
AluI	AGCT	4 cut(s)	10, 161, 261, 345
Alw26I	GTCTC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	367
Asp718I	GGTACC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	401
AsuC2I	CCSGG	2 cut(s)	59, 74
AsuHPI	GGTGA	2 cut(s)	268, 293
BanI	GGYRCC	1 cut(s)	138
BccI	CCATC	1 cut(s)	349
BcnI	CCSGG	2 cut(s)	59, 74
BcoDI	GTCTC	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	350
BfoI	RGCGCY	1 cut(s)	402
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
Bme1390I	CCNGG	2 cut(s)	59, 74
BmiI	GGNNCC	2 cut(s)	63, 140
BmrFI	CCNGG	2 cut(s)	59, 74
BmsI	GCATC	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	381
BpuMI	CCSGG	2 cut(s)	59, 74
Bsa29I	ATCGAT	1 cut(s)	454
BsaJI	CCNNGG	1 cut(s)	154
BsaWI	WCCGGW	3 cut(s)	64, 141, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse118I	RCCGGY	1 cut(s)	127
BseCI	ATCGAT	1 cut(s)	454
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseYI	CCCAGC	1 cut(s)	277
Bsh1285I	CGRYCG	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	454
BsiEI	CGRYCG	1 cut(s)	58
BsiSI	CCGG	6 cut(s)	58, 65, 73, 128, 142, 176
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	267, 451
BspACI	CCGC	4 cut(s)	131, 170, 200, 248
BspDI	ATCGAT	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	63, 140
BspMAI	CTGCAG	1 cut(s)	354
BspT107I	GGYRCC	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	2 cut(s)	267, 451
BstF5I	GGATG	1 cut(s)	430
BstH2I	RGCGCY	1 cut(s)	402
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	2 cut(s)	270, 454
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	2 cut(s)	267, 451
BstMCI	CGRYCG	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	2 cut(s)	57, 72
BstSFI	CTRYAG	1 cut(s)	350
Bsu15I	ATCGAT	1 cut(s)	454
BsuTUI	ATCGAT	1 cut(s)	454
BtsCI	GGATG	1 cut(s)	430
CfoI	GCGC	1 cut(s)	401
Cfr10I	RCCGGY	1 cut(s)	127
ClaI	ATCGAT	1 cut(s)	454
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	2 cut(s)	329, 418
CviJI	RGCY	5 cut(s)	10, 161, 261, 345, 359
CviKI_1	RGCY	5 cut(s)	10, 161, 261, 345, 359
CviQI	GTAC	1 cut(s)	139
DpnI	GATC	2 cut(s)	269, 453
DpnII	GATC	2 cut(s)	267, 451
FaeI	CATG	2 cut(s)	332, 421
FaiI	YATR	7 cut(s)	50, 237, 311, 321, 330, 342, 419
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	2 cut(s)	328, 417
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	1 cut(s)	170
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	1 cut(s)	170
GsaI	CCCAGC	1 cut(s)	281
GsuI	CTGGAG	1 cut(s)	381
HaeII	RGCGCY	1 cut(s)	402
HapII	CCGG	6 cut(s)	58, 65, 73, 128, 142, 176
HhaI	GCGC	1 cut(s)	401
Hin1II	CATG	2 cut(s)	332, 421
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	87
HpaII	CCGG	6 cut(s)	58, 65, 73, 128, 142, 176
HphI	GGTGA	2 cut(s)	268, 293
Hpy166II	GTNNAC	3 cut(s)	28, 55, 205
Hpy188I	TCNGA	3 cut(s)	86, 158, 405
Hpy8I	GTNNAC	3 cut(s)	28, 55, 205
HpyCH4IV	ACGT	2 cut(s)	30, 231
HpyCH4V	TGCA	2 cut(s)	48, 352
HpySE526I	ACGT	2 cut(s)	30, 231
Hsp92II	CATG	2 cut(s)	332, 421
HspAI	GCGC	1 cut(s)	399
KpnI	GGTACC	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	267, 451
LmnI	GCTCC	1 cut(s)	158
LweI	GCATC	1 cut(s)	235
MaeII	ACGT	2 cut(s)	30, 231
MalI	GATC	2 cut(s)	269, 453
MboI	GATC	2 cut(s)	267, 451
MboII	GAAGA	1 cut(s)	277
MluCI	AATT	3 cut(s)	21, 34, 367
MnlI	CCTC	3 cut(s)	164, 181, 425
MseI	TTAA	3 cut(s)	33, 228, 371
MspI	CCGG	6 cut(s)	58, 65, 73, 128, 142, 176
MspR9I	CCNGG	2 cut(s)	59, 74
NciI	CCSGG	2 cut(s)	59, 74
NdeII	GATC	2 cut(s)	267, 451
NlaIII	CATG	2 cut(s)	332, 421
NlaIV	GGNNCC	2 cut(s)	63, 140
NspI	RCATGY	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	87
PfoI	TCCNGGA	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	171
PspFI	CCCAGC	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	63, 140
PstI	CTGCAG	1 cut(s)	354
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SalI	GTCGAC	1 cut(s)	53
SaqAI	TTAA	3 cut(s)	33, 228, 371
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	2 cut(s)	267, 451
ScrFI	CCNGG	2 cut(s)	59, 74
SetI	ASST	9 cut(s)	12, 33, 44, 104, 140, 163, 234, 263, 347
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	350
Sse9I	AATT	3 cut(s)	21, 34, 367
SsiI	CCGC	4 cut(s)	131, 170, 200, 248
StyD4I	CCNGG	2 cut(s)	57, 72
TaiI	ACGT	2 cut(s)	33, 234
TaqI	TCGA	5 cut(s)	16, 54, 116, 446, 454
TasI	AATT	3 cut(s)	21, 34, 367
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	3 cut(s)	33, 228, 371
Tru9I	TTAA	3 cut(s)	33, 228, 371
TspDTI	ATGAA	1 cut(s)	79
XapI	RAATTY	1 cut(s)	367
XceI	RCATGY	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.