Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009906

Physical Location & Seq

Genomic Coordinates Reverse (-)

12977823 .. 12980427

Gene Structure 2605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G208400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGACACAACTTTGCAGAAAAATTGTTCACGTCAATCTGCGCTGGAACATATTCGACCGGGTTTCGATTATTCGGGAGTTTTTCAAGTTCATCTGGGACAGGCTTCTGGTTTGTTCCATAGGGAAGCCGGCGATCCGGTACCGGAGATTGCCCCTGGGGACGACGTTGTCGCCTCCCCCGGAAGCCGTAGAGGGGGTTTTAGTAGTGGATAACCCCGCCACTACAAGCTGTAAGGTGTATGAGACGGATGCGGATTTGGTGAGCTTGAAGGTCAGCTTGTTGGGTGATTGCCAGATTGGAAAGACAAGCTTTATGAGCAAATATGTTGGGGATGAGCAGGAACAGAGGTATTTGGAGATGACAGGGGTGACTTTAATGGATAAGACACAAATTGTTCAAGGAGCTCGGATTTCATTTAGTCTATGGGATGTAGGAGGTGACCAGAGTTCGATGGATCATGTTCCAATCGCCTGTAAAGATGCCGTAGCAATTTTTTTCATGTTTGATCTGACTAGTAGATGCACACTAAACAGTGTTGTTGGATGGTACACTCAAGCAAGAAAATGGAATCAGACAGCAATTCCCATACTAATTGGGACAAAATTCGATGATTTTGTAAGACTTCCCCCTGATCTGCAATGGACAATCGTGACCCAGGCCAGGGCTTATGCAAAGGCTATGAAGGCGACCCTTTTCTTCTCAAGTGCAACCCACAACATCAACGTGAACAAGATCTTCAAGTTCATCTTGGCCAAGCTTTTTAACCTGCCATGGAAAGTAGAGAGGAATTTGAATATTGGAGAGCCCATCATCGATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000910 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005815 GO:0005816 GO:0005856 GO:0007049 GO:0007088 GO:0007096 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007346 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010973 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022402 GO:0023052 GO:0031028 GO:0031991 GO:0032465 GO:0032467 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032954 GO:0032955 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044732 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0065007 GO:0070727 GO:0090068 GO:0097159 GO:0097367 GO:0110020 GO:1901265 GO:1901363 GO:1901891 GO:1901893 GO:1901987 GO:1901990 GO:1902412 GO:1903436 GO:1903438 GO:1903490

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Ras

Protein Analysis

274

Amino Acids

31.1

Weight (kDa)

8.98

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54840 AT5G54840 AT5G54840
fragaria_vesca	FvH4_3g22110 FvH4_3g22110 FvH4_3g22110 FvH4_3g22110
malus_domestica	MD03G1208300.v1.1 MD11G1222500.v1.1
prunus_persica	Prupe.4G208400_v2.0.a1
pyrus_communis	pycom03g15700 pycom11g19630
rosa_chinensis	RchiOBHm_Chr5g0037931
rosa_laevigata	RLG00000033825
rosa_roxburghii	Rroxscaffold_1G00042930
rosa_rugosa	Rorug05G0169800
rosa_samantha	Rh5AG257800 Rh5BG260700 Rh5CG293200 Rh5DG270100
rosa_wichuraiana	Rw5G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	166
Acc36I	ACCTGC	1 cut(s)	774
Acc65I	GGTACC	1 cut(s)	138
AccB1I	GGYRCC	1 cut(s)	138
AciI	CCGC	2 cut(s)	216, 251
AclWI	GGATC	2 cut(s)	127, 462
AcoI	YGGCCR	1 cut(s)	750
AcsI	RAATTY	2 cut(s)	602, 787
AfaI	GTAC	2 cut(s)	140, 548
AfiI	CCNNNNNNNGG	3 cut(s)	192, 660, 661
AgsI	TTSAA	5 cut(s)	85, 268, 398, 739, 793
AhlI	ACTAGT	1 cut(s)	512
AjiI	CACGTC	1 cut(s)	31
AjnI	CCWGG	3 cut(s)	153, 654, 659
AluBI	AGCT	6 cut(s)	228, 264, 276, 309, 404, 757
AluI	AGCT	6 cut(s)	228, 264, 276, 309, 404, 757
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	2 cut(s)	127, 462
AoxI	GGCC	2 cut(s)	657, 750
ApoI	RAATTY	2 cut(s)	602, 787
Asp700I	GAANNNNTTC	1 cut(s)	50
Asp718I	GGTACC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	42
AsuC2I	CCSGG	2 cut(s)	59, 179
AsuHPI	GGTGA	4 cut(s)	271, 296, 379, 449
BalI	TGGCCA	1 cut(s)	752
BanI	GGYRCC	1 cut(s)	138
BanII	GRGCYC	2 cut(s)	406, 807
Bbv12I	GWGCWC	1 cut(s)	406
BccI	CCATC	3 cut(s)	445, 537, 815
BceAI	ACGGC	2 cut(s)	170, 467
BciT130I	CCWGG	3 cut(s)	155, 656, 661
BcnI	CCSGG	2 cut(s)	59, 179
BcoDI	GTCTC	1 cut(s)	236
BcuI	ACTAGT	1 cut(s)	512
BfaI	CTAG	1 cut(s)	513
BfuAI	ACCTGC	1 cut(s)	774
BglII	AGATCT	1 cut(s)	732
Bme1390I	CCNGG	5 cut(s)	59, 155, 179, 656, 661
BmgBI	CACGTC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	5 cut(s)	59, 155, 179, 656, 661
BmsI	GCATC	3 cut(s)	238, 469, 509
BpuEI	CTTGAG	2 cut(s)	537, 685
BpuMI	CCSGG	2 cut(s)	59, 179
Bsa29I	ATCGAT	1 cut(s)	813
BsaJI	CCNNGG	6 cut(s)	153, 154, 177, 654, 660, 770
BsaWI	WCCGGW	2 cut(s)	135, 141
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 660, 661
Bse118I	RCCGGY	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	644
BseBI	CCWGG	3 cut(s)	155, 656, 661
BseCI	ATCGAT	1 cut(s)	813
BseDI	CCNNGG	6 cut(s)	153, 154, 177, 654, 660, 770
BseGI	GGATG	4 cut(s)	253, 337, 433, 548
BseLI	CCNNNNNNNGG	3 cut(s)	192, 660, 661
BseMI	GCAATG	1 cut(s)	644
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	659, 752
BshNI	GGYRCC	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	813
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	406
BsiSI	CCGG	5 cut(s)	58, 128, 136, 142, 179
BslFI	GGGAC	3 cut(s)	110, 172, 610
BslI	CCNNNNNNNGG	3 cut(s)	192, 660, 661
BsmAI	GTCTC	1 cut(s)	236
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	3 cut(s)	110, 172, 610
BsnI	GGCC	2 cut(s)	659, 752
Bsp1286I	GDGCHC	2 cut(s)	406, 807
Bsp143I	GATC	5 cut(s)	132, 454, 505, 631, 732
Bsp19I	CCATGG	1 cut(s)	770
BspACI	CCGC	2 cut(s)	216, 251
BspANI	GGCC	2 cut(s)	659, 752
BspDI	ATCGAT	1 cut(s)	813
BspLI	GGNNCC	1 cut(s)	140
BspMI	ACCTGC	1 cut(s)	774
BspPI	GGATC	2 cut(s)	127, 462
BspT107I	GGYRCC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	644
BsrFI	RCCGGY	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	6 cut(s)	153, 154, 177, 654, 660, 770
BssMI	GATC	5 cut(s)	132, 454, 505, 631, 732
BssT1I	CCWWGG	1 cut(s)	770
Bst2UI	CCWGG	3 cut(s)	155, 656, 661
Bst4CI	ACNGT	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	129
BstDSI	CCRYGG	1 cut(s)	770
BstEII	GGTNACC	1 cut(s)	437
BstF5I	GGATG	4 cut(s)	253, 337, 433, 548
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	5 cut(s)	135, 457, 508, 634, 735
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	5 cut(s)	132, 454, 505, 631, 732
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 683
BstNI	CCWGG	3 cut(s)	155, 656, 661
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	5 cut(s)	57, 153, 177, 654, 659
BstX2I	RGATCY	1 cut(s)	732
BstYI	RGATCY	1 cut(s)	732
Bsu15I	ATCGAT	1 cut(s)	813
BsuRI	GGCC	2 cut(s)	659, 752
BsuTUI	ATCGAT	1 cut(s)	813
BtgI	CCRYGG	1 cut(s)	770
BtrI	CACGTC	1 cut(s)	31
BtsCI	GGATG	4 cut(s)	253, 337, 433, 548
BtsIMutI	CAGTG	1 cut(s)	538
BveI	ACCTGC	1 cut(s)	774
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	127
ClaI	ATCGAT	1 cut(s)	813
Csp6I	GTAC	2 cut(s)	139, 547
CviAII	CATG	3 cut(s)	458, 499, 771
CviQI	GTAC	2 cut(s)	139, 547
DpnI	GATC	5 cut(s)	134, 456, 507, 633, 734
DpnII	GATC	5 cut(s)	132, 454, 505, 631, 732
DrdI	GACNNNNNNGTC	1 cut(s)	166
DseDI	GACNNNNNNGTC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	750
Ecl136II	GAGCTC	1 cut(s)	404
Eco130I	CCWWGG	1 cut(s)	770
Eco24I	GRGCYC	2 cut(s)	406, 807
Eco53kI	GAGCTC	1 cut(s)	404
Eco91I	GGTNACC	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	404
EcoO65I	GGTNACC	1 cut(s)	437
EcoRII	CCWGG	3 cut(s)	153, 654, 659
EcoT14I	CCWWGG	1 cut(s)	770
EcoT38I	GRGCYC	2 cut(s)	406, 807
ErhI	CCWWGG	1 cut(s)	770
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	3 cut(s)	461, 502, 774
FalI	AAGNNNNNCTT	6 cut(s)	260, 292, 293, 325, 731, 763
FaqI	GGGAC	3 cut(s)	110, 172, 610
FatI	CATG	3 cut(s)	457, 498, 770
FauI	CCCGC	1 cut(s)	223
FokI	GGATG	4 cut(s)	260, 344, 440, 555
FriOI	GRGCYC	2 cut(s)	406, 807
FspBI	CTAG	1 cut(s)	513
GlaI	GCGC	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	659, 752
HapII	CCGG	5 cut(s)	58, 128, 136, 142, 179
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	461, 502, 774
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HindIII	AAGCTT	2 cut(s)	307, 755
HinfI	GANTC	1 cut(s)	568
HpaII	CCGG	5 cut(s)	58, 128, 136, 142, 179
HphI	GGTGA	4 cut(s)	271, 296, 379, 449
Hpy166II	GTNNAC	3 cut(s)	28, 549, 727
Hpy188I	TCNGA	3 cut(s)	408, 510, 573
Hpy188III	TCNNGA	2 cut(s)	74, 649
Hpy8I	GTNNAC	3 cut(s)	28, 549, 727
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	262, 676
HpyCH4III	ACNGT	1 cut(s)	533
HpyCH4IV	ACGT	3 cut(s)	30, 164, 723
HpyCH4V	TGCA	5 cut(s)	15, 522, 637, 671, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 683
HpySE526I	ACGT	3 cut(s)	30, 164, 723
Hsp92II	CATG	3 cut(s)	461, 502, 774
HspAI	GCGC	1 cut(s)	40
KpnI	GGTACC	1 cut(s)	142
KroI	GCCGGC	1 cut(s)	127
KroNI	GCCGGC	1 cut(s)	129
Kzo9I	GATC	5 cut(s)	132, 454, 505, 631, 732
LmnI	GCTCC	1 cut(s)	401
LweI	GCATC	3 cut(s)	238, 469, 509
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	3 cut(s)	30, 164, 723
MaeIII	GTNAC	3 cut(s)	367, 437, 649
MalI	GATC	5 cut(s)	134, 456, 507, 633, 734
MboI	GATC	5 cut(s)	132, 454, 505, 631, 732
MboII	GAAGA	2 cut(s)	688, 727
MflI	RGATCY	1 cut(s)	732
MhlI	GDGCHC	2 cut(s)	406, 807
MlsI	TGGCCA	1 cut(s)	752
MluCI	AATT	7 cut(s)	21, 390, 489, 579, 591, 602, 787
MluNI	TGGCCA	1 cut(s)	752
MmeI	TCCRAC	1 cut(s)	520
MnlI	CCTC	5 cut(s)	183, 184, 339, 428, 777
Mox20I	TGGCCA	1 cut(s)	752
MroNI	GCCGGC	1 cut(s)	127
MroXI	GAANNNNTTC	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	752
MseI	TTAA	2 cut(s)	374, 762
MslI	CAYNNNNRTG	1 cut(s)	722
Msp20I	TGGCCA	1 cut(s)	752
MspI	CCGG	5 cut(s)	58, 128, 136, 142, 179
MspR9I	CCNGG	5 cut(s)	59, 155, 179, 656, 661
MvaI	CCWGG	3 cut(s)	155, 656, 661
MwoI	GCNNNNNNNGC	2 cut(s)	315, 683
NaeI	GCCGGC	1 cut(s)	129
NciI	CCSGG	2 cut(s)	59, 179
NcoI	CCATGG	1 cut(s)	770
NdeII	GATC	5 cut(s)	132, 454, 505, 631, 732
NgoMIV	GCCGGC	1 cut(s)	127
NlaIII	CATG	3 cut(s)	461, 502, 774
NlaIV	GGNNCC	1 cut(s)	140
NmuCI	GTSAC	3 cut(s)	367, 437, 649
PasI	CCCWGGG	1 cut(s)	154
PdiI	GCCGGC	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	568
PflFI	GACNNNGTC	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	406
Psp6I	CCWGG	3 cut(s)	153, 654, 659
PspEI	GGTNACC	1 cut(s)	437
PspGI	CCWGG	3 cut(s)	153, 654, 659
PspN4I	GGNNCC	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	732
PsyI	GACNNNGTC	1 cut(s)	166
RsaI	GTAC	2 cut(s)	140, 548
RsaNI	GTAC	2 cut(s)	139, 547
RseI	CAYNNNNRTG	1 cut(s)	722
SacI	GAGCTC	1 cut(s)	406
SaqAI	TTAA	2 cut(s)	374, 762
Sau3AI	GATC	5 cut(s)	132, 454, 505, 631, 732
ScrFI	CCNGG	5 cut(s)	59, 155, 179, 656, 661
SduI	GDGCHC	2 cut(s)	406, 807
SfaNI	GCATC	3 cut(s)	238, 469, 509
SmiMI	CAYNNNNRTG	1 cut(s)	722
SmlI	CTYRAG	2 cut(s)	552, 700
SmoI	CTYRAG	2 cut(s)	552, 700
SpeI	ACTAGT	1 cut(s)	512
Sse9I	AATT	7 cut(s)	21, 390, 489, 579, 591, 602, 787
SsiI	CCGC	2 cut(s)	216, 251
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	1 cut(s)	513
SstI	GAGCTC	1 cut(s)	406
StyD4I	CCNGG	5 cut(s)	57, 153, 177, 654, 659
StyI	CCWWGG	1 cut(s)	770
TaaI	ACNGT	1 cut(s)	533
TaiI	ACGT	3 cut(s)	33, 167, 726
TaqI	TCGA	5 cut(s)	54, 65, 449, 606, 813
TasI	AATT	7 cut(s)	21, 390, 489, 579, 591, 602, 787
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	2 cut(s)	374, 762
Tru9I	TTAA	2 cut(s)	374, 762
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	3 cut(s)	367, 437, 649
Tsp45I	GTSAC	3 cut(s)	367, 437, 649
TspDTI	ATGAA	5 cut(s)	79, 402, 487, 695, 733
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	538
Tth111I	GACNNNGTC	1 cut(s)	166
XapI	RAATTY	2 cut(s)	602, 787
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.