Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009906

Physical Location & Seq

Genomic Coordinates Forward (+)

32577497 .. 32580056

Gene Structure 2560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1222500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAAACTGCAGCTTAGTCGAAAAATTGTTCACGTTAATTTTAGGTGGTGCATACTCGACCGGGTTTCGATTATCCGGGGGTTTTTCAGATTCATCTGGGACAGGCTTCTTGCTTGTTCGATAGGGAAGCCGGCGGCCAGGTACCGGAGATTGCCCAGCGGAGCTTTCTCGCCGCCACCGGAAGTTTTGGAGGGAGTTATGGTGGTGGACAATCCCACAAGTACTAGTTGTAACGTGTATGAGACGGATGCGGATTTGGTGAGCTTGAAGATCAGTTTGCTGGGTGATTGCCAGATTGGAAAGACAAGTTTTATGAGCAAATATGTTGGGGATGAGCAAGAAGATAGATATTTGCAGATGGCAGGAGTAAATTTGATGGATAAAACGTTGATTGTTCAAGGCGCTCGGATTTCGTTTAGCATTTGGGATGTCGGAGGTGACCAGAGTTCGATAGATCATGTTCCAATAGCCTGTAAAGACGCAGTAGCAATTTTGTTCATGTTTGATCTTACTAGTAGGTGCACACTAAACAGTGTTATTGGATGGTACTGTCAAGCAAGAAAATGGAACCAGACAGCAATTCCCATACTAATTGGGACCAAATTTGATGATTTTGTGAGACTTCCTCCAGATCTGCAATGGACAATTATAACCCAGGCCAGGGCTTATGCAAAGGCTATGAAGGCGACCCTTTTCTTCTCGAGTGCAACCCACAACATCAATGTGAACAAGATTTTCAAATTTATCTTGGCCAAGCTTTTTAATTTGCCATGGAAAGTTGAGAGAAATTTGAATATTGGAGAGCCAATCATCGATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000910 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005815 GO:0005816 GO:0005856 GO:0007049 GO:0007088 GO:0007096 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007346 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010973 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022402 GO:0023052 GO:0031028 GO:0031991 GO:0032465 GO:0032467 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032954 GO:0032955 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044732 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0065007 GO:0070727 GO:0090068 GO:0097159 GO:0097367 GO:0110020 GO:1901265 GO:1901363 GO:1901891 GO:1901893 GO:1901987 GO:1901990 GO:1902412 GO:1903436 GO:1903438 GO:1903490

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Ras

Protein Analysis

274

Amino Acids

30.98

Weight (kDa)

9.05

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	90 - 253	8.2e-21	Ras family
Roc	PF08477	90 - 203	1.9e-17	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54840 AT5G54840 AT5G54840
fragaria_vesca	FvH4_3g22110 FvH4_3g22110 FvH4_3g22110 FvH4_3g22110
malus_domestica	MD03G1208300.v1.1 MD11G1222500.v1.1
prunus_persica	Prupe.4G208400_v2.0.a1
pyrus_communis	pycom03g15700 pycom11g19630
rosa_chinensis	RchiOBHm_Chr5g0037931
rosa_laevigata	RLG00000033825
rosa_roxburghii	Rroxscaffold_1G00042930
rosa_rugosa	Rorug05G0169800
rosa_samantha	Rh5AG257800 Rh5BG260700 Rh5CG293200 Rh5DG270100
rosa_wichuraiana	Rw5G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
Acc65I	GGTACC	1 cut(s)	141
AccB1I	GGYRCC	1 cut(s)	141
AciI	CCGC	4 cut(s)	134, 159, 173, 251
AclI	AACGTT	1 cut(s)	386
AcoI	YGGCCR	2 cut(s)	135, 750
AcsI	RAATTY	4 cut(s)	370, 602, 740, 787
AfaI	GTAC	3 cut(s)	143, 223, 548
AfiI	CCNNNNNNNGG	3 cut(s)	144, 660, 661
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	4 cut(s)	268, 398, 739, 793
AhlI	ACTAGT	2 cut(s)	224, 512
AjnI	CCWGG	3 cut(s)	137, 654, 659
AluBI	AGCT	4 cut(s)	13, 164, 264, 757
AluI	AGCT	4 cut(s)	13, 164, 264, 757
Alw21I	GWGCWC	1 cut(s)	524
Alw26I	GTCTC	2 cut(s)	236, 613
Alw44I	GTGCAC	1 cut(s)	520
Ama87I	CYCGRG	1 cut(s)	700
AoxI	GGCC	3 cut(s)	135, 657, 750
ApaLI	GTGCAC	1 cut(s)	520
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	4 cut(s)	370, 602, 740, 787
Asp718I	GGTACC	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	1 cut(s)	597
AsuC2I	CCSGG	2 cut(s)	62, 77
AsuHPI	GGTGA	3 cut(s)	271, 296, 449
AvaI	CYCGRG	1 cut(s)	700
AvaII	GGWCC	1 cut(s)	597
BaeGI	GKGCMC	1 cut(s)	524
BalI	TGGCCA	1 cut(s)	752
BanI	GGYRCC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	524
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	3 cut(s)	352, 370, 537
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	3 cut(s)	139, 656, 661
BcnI	CCSGG	2 cut(s)	62, 77
BcoDI	GTCTC	2 cut(s)	236, 613
BcuI	ACTAGT	2 cut(s)	224, 512
BfaI	CTAG	2 cut(s)	225, 513
BfmI	CTRYAG	1 cut(s)	8
BfoI	RGCGCY	1 cut(s)	405
BglII	AGATCT	1 cut(s)	631
BisI	GCNGC	3 cut(s)	11, 135, 173
BlsI	GCNGC	3 cut(s)	12, 136, 174
BmcAI	AGTACT	1 cut(s)	223
Bme1390I	CCNGG	5 cut(s)	62, 77, 139, 656, 661
Bme18I	GGWCC	1 cut(s)	597
BmeT110I	CYCGRG	1 cut(s)	700
BmgT120I	GGNCC	1 cut(s)	597
BmiI	GGNNCC	3 cut(s)	143, 569, 598
BmrFI	CCNGG	5 cut(s)	62, 77, 139, 656, 661
BmsI	GCATC	1 cut(s)	238
BplI	GAGNNNNNCTC	2 cut(s)	610, 642
BpmI	CTGGAG	1 cut(s)	612
BpuMI	CCSGG	2 cut(s)	62, 77
Bsa29I	ATCGAT	1 cut(s)	813
BsaJI	CCNNGG	4 cut(s)	76, 654, 660, 770
BsaWI	WCCGGW	2 cut(s)	144, 178
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 660, 661
Bse118I	RCCGGY	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	644
BseBI	CCWGG	3 cut(s)	139, 656, 661
BseCI	ATCGAT	1 cut(s)	813
BseDI	CCNNGG	4 cut(s)	76, 654, 660, 770
BseGI	GGATG	4 cut(s)	253, 337, 433, 548
BseLI	CCNNNNNNNGG	3 cut(s)	144, 660, 661
BseMI	GCAATG	1 cut(s)	644
BseSI	GKGCMC	1 cut(s)	524
BseXI	GCAGC	1 cut(s)	22
BseYI	CCCAGC	2 cut(s)	155, 280
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	3 cut(s)	137, 659, 752
BshNI	GGYRCC	1 cut(s)	141
BshVI	ATCGAT	1 cut(s)	813
BsiEI	CGRYCG	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	524
BsiHKCI	CYCGRG	1 cut(s)	700
BsiSI	CCGG	5 cut(s)	61, 76, 131, 145, 179
BslFI	GGGAC	2 cut(s)	113, 610
BslI	CCNNNNNNNGG	3 cut(s)	144, 660, 661
BsmAI	GTCTC	2 cut(s)	236, 613
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	2 cut(s)	113, 610
BsnI	GGCC	3 cut(s)	137, 659, 752
BsoBI	CYCGRG	1 cut(s)	700
Bsp1286I	GDGCHC	1 cut(s)	524
Bsp143I	GATC	4 cut(s)	270, 454, 505, 631
Bsp19I	CCATGG	1 cut(s)	770
BspACI	CCGC	4 cut(s)	134, 159, 173, 251
BspANI	GGCC	3 cut(s)	137, 659, 752
BspDI	ATCGAT	1 cut(s)	813
BspLI	GGNNCC	3 cut(s)	143, 569, 598
BspMAI	CTGCAG	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	644
BsrFI	RCCGGY	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	4 cut(s)	76, 654, 660, 770
BssMI	GATC	4 cut(s)	270, 454, 505, 631
BssT1I	CCWWGG	1 cut(s)	770
Bst2UI	CCWGG	3 cut(s)	139, 656, 661
Bst4CI	ACNGT	2 cut(s)	533, 551
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	770
BstEII	GGTNACC	1 cut(s)	437
BstF5I	GGATG	4 cut(s)	253, 337, 433, 548
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	4 cut(s)	273, 457, 508, 634
BstMAI	GTCTC	2 cut(s)	236, 613
BstMBI	GATC	4 cut(s)	270, 454, 505, 631
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	683
BstNI	CCWGG	3 cut(s)	139, 656, 661
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	5 cut(s)	60, 75, 137, 654, 659
BstSFI	CTRYAG	1 cut(s)	8
BstSLI	GKGCMC	1 cut(s)	524
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
Bsu15I	ATCGAT	1 cut(s)	813
BsuRI	GGCC	3 cut(s)	137, 659, 752
BsuTUI	ATCGAT	1 cut(s)	813
BtgI	CCRYGG	1 cut(s)	770
BtsCI	GGATG	4 cut(s)	253, 337, 433, 548
BtsIMutI	CAGTG	1 cut(s)	538
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	1 cut(s)	404
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	597
ClaI	ATCGAT	1 cut(s)	813
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	3 cut(s)	142, 222, 547
CviAII	CATG	3 cut(s)	458, 499, 771
CviQI	GTAC	3 cut(s)	142, 222, 547
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	4 cut(s)	272, 456, 507, 633
DpnII	GATC	4 cut(s)	270, 454, 505, 631
EaeI	YGGCCR	2 cut(s)	135, 750
Eco130I	CCWWGG	1 cut(s)	770
Eco47I	GGWCC	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	700
Eco91I	GGTNACC	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	437
EcoRII	CCWGG	3 cut(s)	137, 654, 659
EcoT14I	CCWWGG	1 cut(s)	770
ErhI	CCWWGG	1 cut(s)	770
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	3 cut(s)	461, 502, 774
FaqI	GGGAC	2 cut(s)	113, 610
FatI	CATG	3 cut(s)	457, 498, 770
Fnu4HI	GCNGC	3 cut(s)	11, 135, 173
FokI	GGATG	4 cut(s)	260, 344, 440, 555
Fsp4HI	GCNGC	3 cut(s)	11, 135, 173
FspBI	CTAG	2 cut(s)	225, 513
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	3 cut(s)	11, 135, 173
GsaI	CCCAGC	2 cut(s)	159, 284
GsuI	CTGGAG	1 cut(s)	612
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	3 cut(s)	137, 659, 752
HapII	CCGG	5 cut(s)	61, 76, 131, 145, 179
HgaI	GACGC	1 cut(s)	488
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	3 cut(s)	461, 502, 774
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HindIII	AAGCTT	1 cut(s)	755
HinfI	GANTC	1 cut(s)	90
HpaII	CCGG	5 cut(s)	61, 76, 131, 145, 179
HphI	GGTGA	3 cut(s)	271, 296, 449
Hpy166II	GTNNAC	4 cut(s)	31, 208, 522, 727
Hpy188I	TCNGA	3 cut(s)	89, 408, 434
Hpy188III	TCNNGA	2 cut(s)	629, 700
Hpy8I	GTNNAC	4 cut(s)	31, 208, 522, 727
HpyAV	CCTTC	1 cut(s)	676
HpyCH4III	ACNGT	2 cut(s)	533, 551
HpyCH4IV	ACGT	3 cut(s)	33, 234, 386
HpyCH4V	TGCA	7 cut(s)	10, 51, 355, 522, 637, 671, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	683
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	3 cut(s)	33, 234, 386
Hsp92II	CATG	3 cut(s)	461, 502, 774
HspAI	GCGC	1 cut(s)	402
KpnI	GGTACC	1 cut(s)	145
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
Kzo9I	GATC	4 cut(s)	270, 454, 505, 631
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	2 cut(s)	225, 513
MaeII	ACGT	3 cut(s)	33, 234, 386
MaeIII	GTNAC	2 cut(s)	230, 437
MalI	GATC	4 cut(s)	272, 456, 507, 633
MboI	GATC	4 cut(s)	270, 454, 505, 631
MboII	GAAGA	3 cut(s)	280, 353, 688
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	1 cut(s)	524
MlsI	TGGCCA	1 cut(s)	752
MluNI	TGGCCA	1 cut(s)	752
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	3 cut(s)	184, 428, 636
Mox20I	TGGCCA	1 cut(s)	752
MroNI	GCCGGC	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	752
MseI	TTAA	3 cut(s)	36, 762, 820
MslI	CAYNNNNRTG	1 cut(s)	722
Msp20I	TGGCCA	1 cut(s)	752
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	5 cut(s)	61, 76, 131, 145, 179
MspR9I	CCNGG	5 cut(s)	62, 77, 139, 656, 661
MvaI	CCWGG	3 cut(s)	139, 656, 661
MwoI	GCNNNNNNNGC	1 cut(s)	683
NaeI	GCCGGC	1 cut(s)	132
NciI	CCSGG	2 cut(s)	62, 77
NcoI	CCATGG	1 cut(s)	770
NdeII	GATC	4 cut(s)	270, 454, 505, 631
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	3 cut(s)	461, 502, 774
NlaIV	GGNNCC	3 cut(s)	143, 569, 598
NmuCI	GTSAC	1 cut(s)	437
PaeR7I	CTCGAG	1 cut(s)	700
PdiI	GCCGGC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	90
PkrI	GCNGC	3 cut(s)	12, 136, 174
PsiI	TTATAA	1 cut(s)	650
Psp1406I	AACGTT	1 cut(s)	386
Psp6I	CCWGG	3 cut(s)	137, 654, 659
PspEI	GGTNACC	1 cut(s)	437
PspFI	CCCAGC	2 cut(s)	155, 280
PspGI	CCWGG	3 cut(s)	137, 654, 659
PspN4I	GGNNCC	3 cut(s)	143, 569, 598
PspPI	GGNCC	1 cut(s)	597
PstI	CTGCAG	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	3 cut(s)	143, 223, 548
RsaNI	GTAC	3 cut(s)	142, 222, 547
RseI	CAYNNNNRTG	1 cut(s)	722
SaqAI	TTAA	3 cut(s)	36, 762, 820
SatI	GCNGC	3 cut(s)	11, 135, 173
Sau3AI	GATC	4 cut(s)	270, 454, 505, 631
Sau96I	GGNCC	1 cut(s)	597
ScaI	AGTACT	1 cut(s)	223
ScrFI	CCNGG	5 cut(s)	62, 77, 139, 656, 661
SduI	GDGCHC	1 cut(s)	524
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	8
Sfr274I	CTCGAG	1 cut(s)	700
SinI	GGWCC	1 cut(s)	597
SlaI	CTCGAG	1 cut(s)	700
SmiMI	CAYNNNNRTG	1 cut(s)	722
SmlI	CTYRAG	1 cut(s)	700
SmoI	CTYRAG	1 cut(s)	700
SpeI	ACTAGT	2 cut(s)	224, 512
SsiI	CCGC	4 cut(s)	134, 159, 173, 251
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	2 cut(s)	225, 513
StyD4I	CCNGG	5 cut(s)	60, 75, 137, 654, 659
StyI	CCWWGG	1 cut(s)	770
TaaI	ACNGT	2 cut(s)	533, 551
TaiI	ACGT	3 cut(s)	36, 237, 389
TaqI	TCGA	7 cut(s)	19, 57, 68, 119, 449, 701, 813
TatI	WGTACW	1 cut(s)	221
TauI	GCSGC	2 cut(s)	137, 175
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	3 cut(s)	36, 762, 820
Tru9I	TTAA	3 cut(s)	36, 762, 820
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	4 cut(s)	17, 82, 487, 695
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	538
VneI	GTGCAC	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	597
XapI	RAATTY	4 cut(s)	370, 602, 740, 787
XcmI	CCANNNNNNNNNTGG	1 cut(s)	636
XhoI	CTCGAG	1 cut(s)	700
XspI	CTAG	2 cut(s)	225, 513
ZrmI	AGTACT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.