Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0009906

Physical Location & Seq

Genomic Coordinates Forward (+)

28737979 .. 28740172

Gene Structure 2194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1208300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCTACTAATGATGGATTATATTAATTTTTTCTCCTTTTTCTTTTTGTTCTTGAAGAGCAAATATGTTGGGGATGAGCAAGAACATAGATACCTGCAGATGGCAGGAGTAAATTTGATGGATAAAACGTTGATTGTTCAGGGCGCTCGGATTTCGTTTAGCATGTGGGATGTGGGAGGCAACCAGAGTTCGATAGCTCATGTTCCAATCGCCTGTAAAGATGCAGTAGCAATTTTGTTCATGTTTGATCTTACTAGTAGGCGCACGCTAAACAGTGTCATTGGATGGTACAGTCAAGCAAGAAAATGGAACCAGACAGCAATTCCCATACTAATTGGGACTAAATTTGATGATTTTGTGAGACTTCCCCCAGATCTGCAGTGGACAATTGTAACCCAGGCCAGGGCTTATGCAAAGGCTATAAAGGCGACCCTCTTCTTCTCAAGTGCAACCCACAACATCAATGTGAACAAGGTCTTCAAATTTATCTTGGCCAAGCTTTTTAACTTGCCTTGGAAAATAGAGAGAAATTTGACTATTGGCGAGCCAATCATCGATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000910 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005815 GO:0005816 GO:0005856 GO:0007049 GO:0007088 GO:0007096 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007346 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010973 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022402 GO:0023052 GO:0031028 GO:0031991 GO:0032465 GO:0032467 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032954 GO:0032955 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044732 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0065007 GO:0070727 GO:0090068 GO:0097159 GO:0097367 GO:0110020 GO:1901265 GO:1901363 GO:1901891 GO:1901893 GO:1901987 GO:1901990 GO:1902412 GO:1903436 GO:1903438 GO:1903490

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Ras

Protein Analysis

188

Amino Acids

21.58

Weight (kDa)

9.49

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	20 - 167	1.2e-15	Ras family
Roc	PF08477	20 - 117	1.4e-10	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54840 AT5G54840 AT5G54840
fragaria_vesca	FvH4_3g22110 FvH4_3g22110 FvH4_3g22110 FvH4_3g22110
malus_domestica	MD03G1208300.v1.1 MD11G1222500.v1.1
prunus_persica	Prupe.4G208400_v2.0.a1
pyrus_communis	pycom03g15700 pycom11g19630
rosa_chinensis	RchiOBHm_Chr5g0037931
rosa_laevigata	RLG00000033825
rosa_roxburghii	Rroxscaffold_1G00042930
rosa_rugosa	Rorug05G0169800
rosa_samantha	Rh5AG257800 Rh5BG260700 Rh5CG293200 Rh5DG270100
rosa_wichuraiana	Rw5G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	102
AclI	AACGTT	1 cut(s)	128
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	4 cut(s)	112, 344, 482, 529
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	3 cut(s)	100, 402, 403
AgsI	TTSAA	2 cut(s)	55, 481
AhlI	ACTAGT	1 cut(s)	254
AjnI	CCWGG	2 cut(s)	396, 401
AluBI	AGCT	2 cut(s)	197, 499
AluI	AGCT	2 cut(s)	197, 499
Alw26I	GTCTC	1 cut(s)	355
AoxI	GGCC	2 cut(s)	399, 492
ApoI	RAATTY	4 cut(s)	112, 344, 482, 529
AseI	ATTAAT	1 cut(s)	24
AspLEI	GCGC	2 cut(s)	146, 264
BalI	TGGCCA	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	469
BccI	CCATC	4 cut(s)	7, 94, 112, 279
BciT130I	CCWGG	2 cut(s)	398, 403
BcoDI	GTCTC	1 cut(s)	355
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	2 cut(s)	95, 377
BfoI	RGCGCY	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	102
BglII	AGATCT	1 cut(s)	373
Bme1390I	CCNGG	2 cut(s)	398, 403
BmiI	GGNNCC	1 cut(s)	311
BmrFI	CCNGG	2 cut(s)	398, 403
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	469
BpuEI	CTTGAG	1 cut(s)	427
Bsa29I	ATCGAT	1 cut(s)	555
BsaJI	CCNNGG	3 cut(s)	396, 402, 512
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 402, 403
BseBI	CCWGG	2 cut(s)	398, 403
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	3 cut(s)	396, 402, 512
BseGI	GGATG	3 cut(s)	79, 175, 290
BseLI	CCNNNNNNNGG	3 cut(s)	100, 402, 403
BshFI	GGCC	2 cut(s)	401, 494
BshVI	ATCGAT	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	3 cut(s)	100, 402, 403
BsmAI	GTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	401, 494
Bsp143I	GATC	2 cut(s)	247, 373
BspANI	GGCC	2 cut(s)	401, 494
BspDI	ATCGAT	1 cut(s)	555
BspLI	GGNNCC	1 cut(s)	311
BspMAI	CTGCAG	2 cut(s)	99, 381
BspMI	ACCTGC	1 cut(s)	102
BspQI	GCTCTTC	1 cut(s)	50
BssECI	CCNNGG	3 cut(s)	396, 402, 512
BssMI	GATC	2 cut(s)	247, 373
BssT1I	CCWWGG	1 cut(s)	512
Bst2UI	CCWGG	2 cut(s)	398, 403
Bst4CI	ACNGT	2 cut(s)	275, 293
Bst6I	CTCTTC	2 cut(s)	50, 440
BstC8I	GCNNGC	2 cut(s)	266, 545
BstF5I	GGATG	3 cut(s)	79, 175, 290
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	2 cut(s)	146, 264
BstKTI	GATC	2 cut(s)	250, 376
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	2 cut(s)	247, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNI	CCWGG	2 cut(s)	398, 403
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	396, 401
BstSFI	CTRYAG	2 cut(s)	95, 377
BstV2I	GAAGAC	1 cut(s)	469
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
Bsu15I	ATCGAT	1 cut(s)	555
BsuRI	GGCC	2 cut(s)	401, 494
BsuTUI	ATCGAT	1 cut(s)	555
BtsCI	GGATG	3 cut(s)	79, 175, 290
BtsI	GCAGTG	1 cut(s)	386
BtsIMutI	CAGTG	2 cut(s)	280, 386
BveI	ACCTGC	1 cut(s)	102
Cac8I	GCNNGC	2 cut(s)	266, 545
CfoI	GCGC	2 cut(s)	146, 264
ClaI	ATCGAT	1 cut(s)	555
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	3 cut(s)	163, 200, 241
CviJI	RGCY	7 cut(s)	197, 401, 407, 419, 494, 499, 547
CviKI_1	RGCY	7 cut(s)	197, 401, 407, 419, 494, 499, 547
CviQI	GTAC	1 cut(s)	289
DpnI	GATC	2 cut(s)	249, 375
DpnII	GATC	2 cut(s)	247, 373
EaeI	YGGCCR	1 cut(s)	492
Eam1104I	CTCTTC	2 cut(s)	50, 440
EarI	CTCTTC	2 cut(s)	50, 440
Eco130I	CCWWGG	1 cut(s)	512
EcoRII	CCWGG	2 cut(s)	396, 401
EcoT14I	CCWWGG	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	512
FaeI	CATG	3 cut(s)	166, 203, 244
FaiI	YATR	9 cut(s)	21, 66, 87, 164, 201, 242, 329, 411, 422
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	3 cut(s)	162, 199, 240
FokI	GGATG	3 cut(s)	86, 182, 297
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	2 cut(s)	145, 263
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	401, 494
HhaI	GCGC	2 cut(s)	146, 264
Hin1II	CATG	3 cut(s)	166, 203, 244
Hin6I	GCGC	2 cut(s)	144, 262
HinP1I	GCGC	2 cut(s)	144, 262
HindIII	AAGCTT	1 cut(s)	497
Hpy166II	GTNNAC	2 cut(s)	384, 469
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	2 cut(s)	384, 469
HpyCH4III	ACNGT	2 cut(s)	275, 293
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	5 cut(s)	97, 224, 379, 413, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	3 cut(s)	166, 203, 244
HspAI	GCGC	2 cut(s)	144, 262
Kzo9I	GATC	2 cut(s)	247, 373
LguI	GCTCTTC	1 cut(s)	50
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	2 cut(s)	249, 375
MboI	GATC	2 cut(s)	247, 373
MboII	GAAGA	4 cut(s)	67, 427, 430, 469
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	1 cut(s)	373
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	9 cut(s)	25, 112, 231, 321, 333, 344, 387, 482, 529
MluNI	TGGCCA	1 cut(s)	494
MnlI	CCTC	2 cut(s)	170, 443
Mox20I	TGGCCA	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	3 cut(s)	24, 504, 562
MslI	CAYNNNNRTG	1 cut(s)	464
Msp20I	TGGCCA	1 cut(s)	494
MspR9I	CCNGG	2 cut(s)	398, 403
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	2 cut(s)	398, 403
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeII	GATC	2 cut(s)	247, 373
NlaIII	CATG	3 cut(s)	166, 203, 244
NlaIV	GGNNCC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	166
PciSI	GCTCTTC	1 cut(s)	50
PshBI	ATTAAT	1 cut(s)	24
Psp1406I	AACGTT	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	396, 401
PspGI	CCWGG	2 cut(s)	396, 401
PspN4I	GGNNCC	1 cut(s)	311
PstI	CTGCAG	2 cut(s)	99, 381
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	464
SapI	GCTCTTC	1 cut(s)	50
SaqAI	TTAA	3 cut(s)	24, 504, 562
Sau3AI	GATC	2 cut(s)	247, 373
ScrFI	CCNGG	2 cut(s)	398, 403
SetI	ASST	5 cut(s)	96, 131, 199, 477, 501
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	2 cut(s)	95, 377
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
SpeI	ACTAGT	1 cut(s)	254
Sse9I	AATT	9 cut(s)	25, 112, 231, 321, 333, 344, 387, 482, 529
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	396, 401
StyI	CCWWGG	1 cut(s)	512
TaaI	ACNGT	2 cut(s)	275, 293
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	2 cut(s)	191, 555
TasI	AATT	9 cut(s)	25, 112, 231, 321, 333, 344, 387, 482, 529
Tru1I	TTAA	3 cut(s)	24, 504, 562
Tru9I	TTAA	3 cut(s)	24, 504, 562
TscAI	CASTG	2 cut(s)	280, 386
TspDTI	ATGAA	1 cut(s)	229
TspRI	CASTG	2 cut(s)	280, 386
VspI	ATTAAT	1 cut(s)	24
XapI	RAATTY	4 cut(s)	112, 344, 482, 529
XceI	RCATGY	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	378
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.