Rorug05G0169800
ERF Family

Belongs to the calycin superfamily. Lipocalin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
15791505 .. 15797517
6013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0169800.1

Sequence Viewer

Length: 1248 bp
ATGGGAGGCATGATGTCATTTTTCAAAAGCAGTAGCAGGAGCCGCTCACTATCAAGAAGCACAACCGGCGACACTGGCGGCAGCGTGACTAGGAGAACGTCATCCTATGGTTCGAAGAAATCATCAAGCATGAGTAGTACCAGTGGTGATAAAGCTGCACATACAGGAACCCAGAAGAAGCACAAGTACGCATATATTCCTGATAACTTCACATCCATTGAACAGGTTACAGATGCATTGAGAAAGGAAGGACTAGAGTCGTCTAATCTCATTGTTGGAATAGACTTCACTAAAAGCAATGAATGGACAGGCATGAAGTCATTCAACAATCGAAGCCTACATGCCATTGGCGATGTACCTAATCCATACGAAAAAGCTATCTCTATAATCGGAAAAACTTTGTCTCCCTTTGATGAAGACAACTTAATTCCTTGTTTTGGCTTTGGTGATGCTACCACTCATGATCAAGAGGTGTTCAGCTTTCACACTGATCATTCACCCTGTCATGGTTTCGAAGAAGTCTTGACCTGCTACAAAAGAATAGTTCCTACTTTACGATTATCAGGGCCAACTTCTTATGGACCTGTAATTGAGGCTGCAATGGACATTGTTGATAAAAGTGCAGGTCAATACCATGTGTTAGTTATCATTGCAGATGGCCAGGTTACAAGAAGCATCAATACCAACGACAAGGAATTGAGTCCACAAGAGGAGAAGACAATCAAAGCAATTGCAGATGCAAGTTCCTATCCACTCTCCATTATTCTTATTGGAGTCGGCGATGGTCCCTGGGAAGACATGAAAAAATTTGATGACAAGCTCCCTGCACGAGAATTCGATAATTTTCAGTTTGTTAATTTTACGGACATTATGGCTAAACAAGTATCTGCCTCTGAGAAAGAGGCTGCTTTTGCTCTTGCTGCCCTCATGGAAATCCCACTCCAGTATAAGGCAACTATTGAATTTGGTATTCTTGGACGTACAACAGGGAAAGGGAAGAGAACAGTTCCACGCCCTCCACCAGTTCCATACGTTCATCGTCCACCTCCGACTCGTGAACCAAGTGCAATCTCAGCACCCGTTGGGAATGACCGCGATGAATTGGTCTGTCCAATCTGCCTGACTAATGCAAAGGACCTGGCGTTTGGCTGTGGACACATGGCCTGCAGAGACTGTGGAGCAAGATTATCCAACTGTCACATATGCCGCCAGCCAATCCGCAGCCGTCTCAGGGTTTACTCTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0001817 GO:0001818 GO:0001952 GO:0001953 GO:0002682 GO:0002683 GO:0002685 GO:0002686 GO:0003006 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005975 GO:0005996 GO:0006006 GO:0006629 GO:0006950 GO:0006979 GO:0007162 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007568 GO:0008150 GO:0008152 GO:0008285 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010431 GO:0010565 GO:0010605 GO:0010640 GO:0010642 GO:0010646 GO:0010648 GO:0010810 GO:0010812 GO:0012505 GO:0014012 GO:0015485 GO:0016020 GO:0016043 GO:0019216 GO:0019217 GO:0019222 GO:0019318 GO:0021700 GO:0022008 GO:0022414 GO:0022626 GO:0023051 GO:0023057 GO:0030030 GO:0030154 GO:0030155 GO:0030182 GO:0030334 GO:0030336 GO:0030425 GO:0031099 GO:0031102 GO:0031103 GO:0031175 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031976 GO:0031977 GO:0031984 GO:0032101 GO:0032102 GO:0032386 GO:0032387 GO:0032501 GO:0032502 GO:0032504 GO:0032642 GO:0032682 GO:0032879 GO:0032880 GO:0032934 GO:0032991 GO:0033157 GO:0033554 GO:0033993 GO:0034357 GO:0034442 GO:0034443 GO:0036094 GO:0036477 GO:0040007 GO:0040012 GO:0040013 GO:0042060 GO:0042127 GO:0042221 GO:0042246 GO:0042306 GO:0042308 GO:0042493 GO:0042651 GO:0042995 GO:0043005 GO:0043025 GO:0043178 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044238 GO:0044281 GO:0044297 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044463 GO:0044464 GO:0045833 GO:0045922 GO:0046320 GO:0046322 GO:0046822 GO:0046823 GO:0048316 GO:0048468 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048608 GO:0048609 GO:0048660 GO:0048662 GO:0048666 GO:0048678 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050727 GO:0050728 GO:0050746 GO:0050748 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051223 GO:0051224 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051270 GO:0051271 GO:0051716 GO:0051893 GO:0051895 GO:0055035 GO:0060255 GO:0060322 GO:0060341 GO:0060587 GO:0060588 GO:0061458 GO:0061564 GO:0062012 GO:0062014 GO:0065007 GO:0070201 GO:0071637 GO:0071638 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090087 GO:0090109 GO:0090317 GO:0097159 GO:0097305 GO:0097447 GO:0097458 GO:0120025 GO:0120036 GO:0120038 GO:1900015 GO:1900016 GO:1900180 GO:1900181 GO:1901562 GO:1901700 GO:1901888 GO:1901889 GO:1903391 GO:1903392 GO:1903827 GO:1903828 GO:1904589 GO:1904590 GO:1904950 GO:1990904 GO:2000097 GO:2000098 GO:2000145 GO:2000146 GO:2000401 GO:2000402 GO:2000404 GO:2000405
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

415

Amino Acids

45.39

Weight (kDa)

7.98

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Copine PF07002 112 - 324 1.9e-72 Copine
zf-C3HC4_3 PF13920 367 - 408 1.4e-08 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 536, 614
AccBSI CCGCTC 1 cut(s) 45
AccII CGCG 1 cut(s) 1095
AciI CCGC 5 cut(s) 43, 78, 1093, 1207, 1219
AcoI YGGCCR 1 cut(s) 658
AcsI RAATTY 3 cut(s) 806, 833, 962
AfaI GTAC 4 cut(s) 139, 188, 357, 982
AfiI CCNNNNNNNGG 4 cut(s) 437, 506, 949, 1231
AgsI TTSAA 4 cut(s) 25, 221, 325, 962
AjnI CCWGG 3 cut(s) 660, 788, 1137
AluBI AGCT 4 cut(s) 155, 377, 480, 820
AluI AGCT 4 cut(s) 155, 377, 480, 820
Alw26I GTCTC 3 cut(s) 408, 1164, 1232
AlwNI CAGNNNCTG 1 cut(s) 1173
AoxI GGCC 3 cut(s) 566, 658, 1161
ApeKI GCWGC 6 cut(s) 81, 155, 596, 905, 920, 1221
ApoI RAATTY 3 cut(s) 806, 833, 962
ArsI GACNNNNNNTTYG 2 cut(s) 1127, 1159
Asp700I GAANNNNTTC 1 cut(s) 320
AspS9I GGNCC 4 cut(s) 566, 581, 785, 1135
AsuHPI GGTGA 3 cut(s) 158, 458, 489
AsuII TTCGAA 2 cut(s) 113, 513
AvaII GGWCC 3 cut(s) 581, 785, 1135
BalI TGGCCA 1 cut(s) 660
BarI GAAGNNNNNNTAC 4 cut(s) 170, 202, 664, 696
BauI CACGAG 2 cut(s) 828, 1053
BbsI GAAGAC 3 cut(s) 423, 722, 801
BbvI GCAGC 6 cut(s) 93, 142, 583, 892, 907, 1233
BccI CCATC 2 cut(s) 650, 776
BceAI ACGGC 1 cut(s) 1209
BciT130I CCWGG 3 cut(s) 662, 790, 1139
BclI TGATCA 2 cut(s) 463, 490
BcoDI GTCTC 3 cut(s) 408, 1164, 1232
BfaI CTAG 2 cut(s) 90, 254
BfmI CTRYAG 1 cut(s) 1165
BfuAI ACCTGC 2 cut(s) 536, 614
BisI GCNGC 9 cut(s) 43, 79, 82, 156, 597, 906, 921, 1207, 1222
BlsI GCNGC 9 cut(s) 44, 80, 83, 157, 598, 907, 922, 1208, 1223
Bme1390I CCNGG 3 cut(s) 662, 790, 1139
Bme18I GGWCC 3 cut(s) 581, 785, 1135
BmgT120I GGNCC 4 cut(s) 566, 581, 785, 1135
BmiI GGNNCC 3 cut(s) 41, 169, 787
BmrFI CCNGG 3 cut(s) 662, 790, 1139
BmsI GCATC 4 cut(s) 223, 439, 684, 727
BoxI GACNNNNGTC 1 cut(s) 256
BpiI GAAGAC 3 cut(s) 423, 722, 801
BpmI CTGGAG 1 cut(s) 926
Bpu14I TTCGAA 2 cut(s) 113, 513
BsaJI CCNNGG 2 cut(s) 788, 789
BsaXI ACNNNNNCTCC 2 cut(s) 388, 418
Bsc4I CCNNNNNNNGG 4 cut(s) 437, 506, 949, 1231
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 4 cut(s) 79, 141, 943, 1022
Bse3DI GCAATG 3 cut(s) 304, 606, 648
BseBI CCWGG 3 cut(s) 662, 790, 1139
BseDI CCNNGG 2 cut(s) 788, 789
BseGI GGATG 2 cut(s) 101, 212
BseLI CCNNNNNNNGG 4 cut(s) 437, 506, 949, 1231
BseMI GCAATG 3 cut(s) 304, 606, 648
BseMII CTCAG 3 cut(s) 885, 1086, 1243
BseNI ACTGG 4 cut(s) 79, 141, 943, 1022
BseRI GAGGAG 1 cut(s) 725
BseXI GCAGC 6 cut(s) 93, 142, 583, 892, 907, 1233
BsgI GTGCAG 3 cut(s) 141, 642, 810
Bsh1236I CGCG 1 cut(s) 1095
BshFI GGCC 3 cut(s) 568, 660, 1163
BsiSI CCGG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 771
BslI CCNNNNNNNGG 4 cut(s) 437, 506, 949, 1231
BsmAI GTCTC 3 cut(s) 408, 1164, 1232
BsmBI CGTCTC 1 cut(s) 1232
BsmFI GGGAC 1 cut(s) 771
BsnI GGCC 3 cut(s) 568, 660, 1163
Bsp119I TTCGAA 2 cut(s) 113, 513
Bsp143I GATC 2 cut(s) 463, 490
BspACI CCGC 5 cut(s) 43, 78, 1093, 1207, 1219
BspANI GGCC 3 cut(s) 568, 660, 1163
BspCNI CTCAG 3 cut(s) 886, 1085, 1242
BspFNI CGCG 1 cut(s) 1095
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 3 cut(s) 41, 169, 787
BspMAI CTGCAG 1 cut(s) 1169
BspMI ACCTGC 2 cut(s) 536, 614
BspT104I TTCGAA 2 cut(s) 113, 513
BsrBI CCGCTC 1 cut(s) 45
BsrDI GCAATG 3 cut(s) 304, 606, 648
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 4 cut(s) 79, 141, 943, 1022
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 788, 789
BssMI GATC 2 cut(s) 463, 490
BssSI CACGAG 2 cut(s) 828, 1053
Bst2BI CACGAG 2 cut(s) 828, 1053
Bst2UI CCWGG 3 cut(s) 662, 790, 1139
Bst4CI ACNGT 3 cut(s) 1006, 1175, 1196
Bst6I CTCTTC 1 cut(s) 992
BstBI TTCGAA 2 cut(s) 113, 513
BstC8I GCNNGC 2 cut(s) 1165, 1211
BstDEI CTNAG 3 cut(s) 894, 1072, 1229
BstF5I GGATG 2 cut(s) 101, 212
BstFNI CGCG 1 cut(s) 1095
BstKTI GATC 2 cut(s) 466, 493
BstMAI GTCTC 3 cut(s) 408, 1164, 1232
BstMBI GATC 2 cut(s) 463, 490
BstMWI GCNNNNNNNGC 6 cut(s) 42, 66, 75, 911, 920, 1073
BstNI CCWGG 3 cut(s) 662, 790, 1139
BstNSI RCATGY 1 cut(s) 344
BstPAI GACNNNNGTC 1 cut(s) 256
BstSCI CCNGG 3 cut(s) 660, 788, 1137
BstSFI CTRYAG 1 cut(s) 1165
BstUI CGCG 1 cut(s) 1095
BstV1I GCAGC 6 cut(s) 93, 142, 583, 892, 907, 1233
BstV2I GAAGAC 3 cut(s) 423, 722, 801
BsuRI GGCC 3 cut(s) 568, 660, 1163
BtgZI GCGATG 3 cut(s) 366, 795, 1110
BtsCI GGATG 2 cut(s) 101, 212
BtsIMutI CAGTG 3 cut(s) 72, 148, 486
BveI ACCTGC 2 cut(s) 536, 614
Cac8I GCNNGC 2 cut(s) 1165, 1211
CaiI CAGNNNCTG 1 cut(s) 1173
CciI TCATGA 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 4 cut(s) 566, 581, 785, 1135
Csp6I GTAC 4 cut(s) 138, 187, 356, 981
CviQI GTAC 4 cut(s) 138, 187, 356, 981
DdeI CTNAG 3 cut(s) 894, 1072, 1229
DpnI GATC 2 cut(s) 465, 492
DpnII GATC 2 cut(s) 463, 490
EaeI YGGCCR 1 cut(s) 658
Eam1104I CTCTTC 1 cut(s) 992
EarI CTCTTC 1 cut(s) 992
Eco47I GGWCC 3 cut(s) 581, 785, 1135
EcoO109I RGGNCCY 1 cut(s) 1135
EcoRI GAATTC 1 cut(s) 833
EcoRII CCWGG 3 cut(s) 660, 788, 1137
EcoT22I ATGCAT 1 cut(s) 238
Esp3I CGTCTC 1 cut(s) 1232
FaqI GGGAC 1 cut(s) 771
FauNDI CATATG 1 cut(s) 1202
FbaI TGATCA 2 cut(s) 463, 490
Fnu4HI GCNGC 9 cut(s) 43, 79, 82, 156, 597, 906, 921, 1207, 1222
FokI GGATG 2 cut(s) 88, 199
Fsp4HI GCNGC 9 cut(s) 43, 79, 82, 156, 597, 906, 921, 1207, 1222
FspBI CTAG 2 cut(s) 90, 254
GluI GCNGC 9 cut(s) 43, 79, 82, 156, 597, 906, 921, 1207, 1222
GsuI CTGGAG 1 cut(s) 926
HaeIII GGCC 3 cut(s) 568, 660, 1163
HapII CCGG 1 cut(s) 66
HinfI GANTC 4 cut(s) 257, 700, 774, 1051
HpaII CCGG 1 cut(s) 66
HphI GGTGA 3 cut(s) 158, 458, 489
Hpy166II GTNNAC 5 cut(s) 704, 1043, 1058, 1154, 1237
Hpy188I TCNGA 3 cut(s) 392, 895, 1050
Hpy188III TCNNGA 7 cut(s) 54, 200, 461, 467, 523, 1055, 1242
Hpy8I GTNNAC 5 cut(s) 704, 1043, 1058, 1154, 1237
HpyAV CCTTC 1 cut(s) 242
HpyCH4III ACNGT 3 cut(s) 1006, 1175, 1196
HpyCH4IV ACGT 3 cut(s) 98, 979, 1032
HpyF10VI GCNNNNNNNGC 6 cut(s) 42, 66, 75, 911, 920, 1073
HpyF3I CTNAG 3 cut(s) 894, 1072, 1229
HpySE526I ACGT 3 cut(s) 98, 979, 1032
Ksp22I TGATCA 2 cut(s) 463, 490
Kzo9I GATC 2 cut(s) 463, 490
LmnI GCTCC 3 cut(s) 39, 825, 1178
Lsp1109I GCAGC 6 cut(s) 93, 142, 583, 892, 907, 1233
LweI GCATC 4 cut(s) 223, 439, 684, 727
MaeI CTAG 2 cut(s) 90, 254
MaeII ACGT 3 cut(s) 98, 979, 1032
MaeIII GTNAC 4 cut(s) 85, 226, 664, 1196
MalI GATC 2 cut(s) 465, 492
MbiI CCGCTC 1 cut(s) 45
MboI GATC 2 cut(s) 463, 490
MboII GAAGA 7 cut(s) 127, 187, 428, 527, 727, 806, 1009
MfeI CAATTG 1 cut(s) 729
MlsI TGGCCA 1 cut(s) 660
MluNI TGGCCA 1 cut(s) 660
MlyI GAGTC 4 cut(s) 266, 709, 783, 1045
MmeI TCCRAC 3 cut(s) 256, 1073, 1215
MnlI CCTC 8 cut(s) 463, 586, 703, 895, 901, 935, 1026, 1056
Mox20I TGGCCA 1 cut(s) 660
Mph1103I ATGCAT 1 cut(s) 238
MroXI GAANNNNTTC 1 cut(s) 320
MscI TGGCCA 1 cut(s) 660
MseI TTAA 2 cut(s) 425, 855
Msp20I TGGCCA 1 cut(s) 660
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 3 cut(s) 662, 790, 1139
MunI CAATTG 1 cut(s) 729
MvaI CCWGG 3 cut(s) 662, 790, 1139
MvnI CGCG 1 cut(s) 1095
MwoI GCNNNNNNNGC 6 cut(s) 42, 66, 75, 911, 920, 1073
NdeI CATATG 1 cut(s) 1202
NdeII GATC 2 cut(s) 463, 490
NlaIV GGNNCC 3 cut(s) 41, 169, 787
NmuCI GTSAC 2 cut(s) 85, 1196
NsiI ATGCAT 1 cut(s) 238
NspI RCATGY 1 cut(s) 344
NspV TTCGAA 2 cut(s) 113, 513
PagI TCATGA 1 cut(s) 460
PasI CCCWGGG 1 cut(s) 789
PdmI GAANNNNTTC 1 cut(s) 320
PkrI GCNGC 9 cut(s) 44, 80, 83, 157, 598, 907, 922, 1208, 1223
PleI GAGTC 4 cut(s) 265, 708, 782, 1045
PpsI GAGTC 4 cut(s) 265, 708, 782, 1045
PpuMI RGGWCCY 1 cut(s) 1135
PshAI GACNNNNGTC 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 1135
Psp6I CCWGG 3 cut(s) 660, 788, 1137
PspGI CCWGG 3 cut(s) 660, 788, 1137
PspN4I GGNNCC 3 cut(s) 41, 169, 787
PspPI GGNCC 4 cut(s) 566, 581, 785, 1135
PspPPI RGGWCCY 1 cut(s) 1135
PstI CTGCAG 1 cut(s) 1169
PstNI CAGNNNCTG 1 cut(s) 1173
RsaI GTAC 4 cut(s) 139, 188, 357, 982
RsaNI GTAC 4 cut(s) 138, 187, 356, 981
SaqAI TTAA 2 cut(s) 425, 855
SatI GCNGC 9 cut(s) 43, 79, 82, 156, 597, 906, 921, 1207, 1222
Sau3AI GATC 2 cut(s) 463, 490
Sau96I GGNCC 4 cut(s) 566, 581, 785, 1135
SchI GAGTC 4 cut(s) 266, 709, 783, 1045
ScrFI CCNGG 3 cut(s) 662, 790, 1139
SfaNI GCATC 4 cut(s) 223, 439, 684, 727
SfcI CTRYAG 1 cut(s) 1165
SfuI TTCGAA 2 cut(s) 113, 513
SinI GGWCC 3 cut(s) 581, 785, 1135
SsiI CCGC 5 cut(s) 43, 78, 1093, 1207, 1219
SspMI CTAG 2 cut(s) 90, 254
StyD4I CCNGG 3 cut(s) 660, 788, 1137
TaaI ACNGT 3 cut(s) 1006, 1175, 1196
TaiI ACGT 3 cut(s) 101, 982, 1035
TaqI TCGA 4 cut(s) 113, 331, 513, 837
TauI GCSGC 3 cut(s) 45, 81, 1209
Tru1I TTAA 2 cut(s) 425, 855
Tru9I TTAA 2 cut(s) 425, 855
TscAI CASTG 3 cut(s) 79, 148, 493
TseFI GTSAC 2 cut(s) 85, 1196
TseI GCWGC 6 cut(s) 81, 155, 596, 905, 920, 1221
Tsp45I GTSAC 2 cut(s) 85, 1196
TspDTI ATGAA 6 cut(s) 315, 329, 429, 815, 1025, 1113
TspGWI ACGGA 1 cut(s) 878
TspRI CASTG 3 cut(s) 79, 148, 493
VpaK11BI GGWCC 3 cut(s) 581, 785, 1135
XapI RAATTY 3 cut(s) 806, 833, 962
XceI RCATGY 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 2 cut(s) 90, 254
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.