Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002487

Physical Location & Seq

Genomic Coordinates Forward (+)

12986081 .. 12992188

Gene Structure 6108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G208500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGATTCAGAAGCAGAAGCTCTTGAGGAGAAGTTGACAGCTTTACTTGGACAGCTCCAAGCAGAGAGTGCCATTTTGGAAAGAATGGTTTACAAGAACAAGAACCAGCATAGGCGTGGCTCGTATTTCCAGTACCTTATGAAGGTAAGGAGGGATTTGAGGCTTTTACAATCCACTAAACTGGAGGAGATTTTGGGTTGCTGTTTCCAAAGTATCACTGGGAAGAGACCTAAGCAAAAAGTACATCTATTAGAAAGCTTGAAGAGAAGGAAATGTGAAAGTGGAAAATATAATTTCATGGAGCGACTTCTGGGAGCTGCACGGCTTCTGTCACAGATGGTTGAGCCAATGCTGAAGGCAGCTACCGAGATATCTACACTGCTCGCTCGTTCATTTTTCATGGGATTTTCTCTGACTATTTTAGCTCTGCTTGCACGACTTCGAGTTTTGGTTCAACAAATTTTACTTGATGTTGTTTCCGTATTCAACATGGTTTCTTCTCTCTCCCAAAAGAAGCAATCCATAAAGATAAATCAAGGAGGACTTGAGGTTTTTAGGGAGTTTTACCCAACAAATGAGGAATTTATCATTCTTGAGTGTGTGTTGAAATCAGATAAGTTTGAATTGCTCGAGAGCACACATAAGAGTGAGATTGCAAGTCATGATGGGGATCTTGCTGTAGGGGCATCATCTGTACTATATCAAAGTGTTGAGTCTTTCCTTGGAGATGATGAAAATATTCCCCAGACGGCAGATGCAAACCACACTATTGAAAAAGTTCCAATCCACGTCACGGAGGATAAGATTGGTTTGTTGTCAGGCCTGTCCAATGACGGTACTGATGGGAAGCTGGTTGAACATTGTGAAGATGGTTCAAACATTGCGGAGACTCCTAGCAATAAGCTTTCTGAAGAAGGTTGCTTGCTACCAGGCTCAAGCTCACCTTCAAGTTCCGATGCATCAAAACTGAGGTCTGGACCTGTTAAAGTGGCATTTGTACAAGTCAAAAGACCTTTACCCTCAACAACAAATACAACTGAAATCCATTTTAAAGAAACTGACATCCATAGCCATAACGAGGAAGAAGATCCCTTGTTCAGTTTGCTTTGTAGTGGAAATGTAAAGAATAGTCTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4477

Protein Analysis

380

Amino Acids

42.2

Weight (kDa)

5.88

Isoelectric Point (pI)

56.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50910 AT1G50910
fragaria_vesca	FvH4_3g22120 FvH4_3g22120
malus_domestica	MD03G1208200.v1.1 MD11G1222400.v1.1
prunus_persica	Prupe.4G208500_v2.0.a1
pyrus_communis	pycom11g19620
rosa_chinensis	RchiOBHm_Chr1g0330851 RchiOBHm_Chr5g0037971
rosa_laevigata	RLG00000022534 RLG00000029769 RLG00000029772 RLG00000029783 RLG00000033828
rosa_multiflora	Rmu_sc0002621.1_g000008 Rmu_sc0002621.1_g000015 Rmu_sc0002670.1_g000013 Rmu_sc0002899.1_g000005 Rmu_sc0010964.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319700
rosa_rugosa	Rorug01G0090700 Rorug05G0169800
rosa_samantha	Rh1AG112300 Rh1BG086400 Rh1BG114800 Rh1CG107700 Rh1CG109400 Rh1DG117800 Rh3BG367100 Rh3BG367300 Rh5AG258000 Rh5BG261000 Rh5CG293300 Rh5DG270200 Rh6BG121000 Rh6BG268100 Rh6CG119300
rosa_wichuraiana	Rw1G009090 Rw5G023910 Rw5G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	884
AclWI	GGATC	2 cut(s)	678, 1082
AcsI	RAATTY	2 cut(s)	459, 581
AcuI	CTGAAG	2 cut(s)	374, 930
AfaI	GTAC	5 cut(s)	134, 243, 696, 838, 999
AfiI	CCNNNNNNNGG	3 cut(s)	142, 793, 1078
AgsI	TTSAA	9 cut(s)	262, 455, 487, 607, 623, 773, 857, 876, 948
AjiI	CACGTC	1 cut(s)	790
AjnI	CCWGG	1 cut(s)	928
Alw21I	GWGCWC	1 cut(s)	638
Alw26I	GTCTC	3 cut(s)	220, 881, 1136
AlwI	GGATC	2 cut(s)	678, 1082
Ama87I	CYCGRG	1 cut(s)	629
AoxI	GGCC	1 cut(s)	820
ApeKI	GCWGC	2 cut(s)	317, 359
ApoI	RAATTY	2 cut(s)	459, 581
ArsI	GACNNNNNNTTYG	2 cut(s)	956, 988
Asp700I	GAANNNNTTC	2 cut(s)	738, 777
AspS9I	GGNCC	1 cut(s)	977
AsuHPI	GGTGA	1 cut(s)	933
AvaI	CYCGRG	1 cut(s)	629
AvaII	GGWCC	1 cut(s)	977
Bbv12I	GWGCWC	1 cut(s)	638
BbvI	GCAGC	2 cut(s)	304, 371
BccI	CCATC	4 cut(s)	331, 659, 836, 863
BceAI	ACGGC	2 cut(s)	338, 765
BciT130I	CCWGG	1 cut(s)	930
BcoDI	GTCTC	3 cut(s)	220, 881, 1136
BfaI	CTAG	1 cut(s)	894
BfmI	CTRYAG	1 cut(s)	678
BisI	GCNGC	2 cut(s)	318, 360
BlsI	GCNGC	2 cut(s)	319, 361
Bme1390I	CCNGG	1 cut(s)	930
Bme18I	GGWCC	1 cut(s)	977
BmeT110I	CYCGRG	1 cut(s)	629
BmgBI	CACGTC	1 cut(s)	790
BmgT120I	GGNCC	1 cut(s)	977
BmrFI	CCNGG	1 cut(s)	930
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	4 cut(s)	695, 745, 946, 968
BmuI	ACTGGG	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	231
BpuEI	CTTGAG	4 cut(s)	44, 566, 614, 919
BsaBI	GATNNNNATC	1 cut(s)	669
BsaI	GGTCTC	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 793, 1078
Bse1I	ACTGG	3 cut(s)	130, 186, 223
Bse3DI	GCAATG	1 cut(s)	879
Bse8I	GATNNNNATC	1 cut(s)	669
BseBI	CCWGG	1 cut(s)	930
BseDI	CCNNGG	1 cut(s)	721
BseGI	GGATG	1 cut(s)	1062
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	3 cut(s)	142, 793, 1078
BseMI	GCAATG	1 cut(s)	879
BseMII	CTCAG	1 cut(s)	959
BseNI	ACTGG	3 cut(s)	130, 186, 223
BseRI	GAGGAG	2 cut(s)	41, 200
BseXI	GCAGC	2 cut(s)	304, 371
BsgI	GTGCAG	1 cut(s)	303
BshFI	GGCC	1 cut(s)	822
BsiHKAI	GWGCWC	1 cut(s)	638
BsiHKCI	CYCGRG	1 cut(s)	629
BslI	CCNNNNNNNGG	3 cut(s)	142, 793, 1078
BsmAI	GTCTC	3 cut(s)	220, 881, 1136
BsnI	GGCC	1 cut(s)	822
Bso31I	GGTCTC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	629
Bsp1286I	GDGCHC	1 cut(s)	638
Bsp1407I	TGTACA	1 cut(s)	997
Bsp143I	GATC	2 cut(s)	670, 1087
BspACI	CCGC	1 cut(s)	884
BspANI	GGCC	1 cut(s)	822
BspCNI	CTCAG	1 cut(s)	960
BspHI	TCATGA	1 cut(s)	661
BspPI	GGATC	2 cut(s)	678, 1082
BspTNI	GGTCTC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	879
BsrGI	TGTACA	1 cut(s)	997
BsrI	ACTGG	3 cut(s)	130, 186, 223
BssECI	CCNNGG	1 cut(s)	721
BssMI	GATC	2 cut(s)	670, 1087
BssT1I	CCWWGG	1 cut(s)	721
Bst2UI	CCWGG	1 cut(s)	930
Bst4CI	ACNGT	1 cut(s)	836
Bst6I	CTCTTC	2 cut(s)	218, 257
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstAUI	TGTACA	1 cut(s)	997
BstC8I	GCNNGC	3 cut(s)	384, 432, 923
BstDEI	CTNAG	2 cut(s)	231, 968
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	1062
BstKTI	GATC	2 cut(s)	673, 1090
BstMAI	GTCTC	3 cut(s)	220, 881, 1136
BstMBI	GATC	2 cut(s)	670, 1087
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 431, 683
BstNI	CCWGG	1 cut(s)	930
BstSCI	CCNGG	1 cut(s)	928
BstSFI	CTRYAG	1 cut(s)	678
BstV1I	GCAGC	2 cut(s)	304, 371
BstX2I	RGATCY	2 cut(s)	670, 1087
BstXI	CCANNNNNNTGG	1 cut(s)	181
BstYI	RGATCY	2 cut(s)	670, 1087
BsuRI	GGCC	1 cut(s)	822
BtrI	CACGTC	1 cut(s)	790
BtsCI	GGATG	1 cut(s)	1062
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	2 cut(s)	216, 377
Cac8I	GCNNGC	3 cut(s)	384, 432, 923
CciI	TCATGA	1 cut(s)	661
Cfr13I	GGNCC	1 cut(s)	977
Csp6I	GTAC	5 cut(s)	133, 242, 695, 837, 998
CviAII	CATG	4 cut(s)	298, 400, 490, 662
CviQI	GTAC	5 cut(s)	133, 242, 695, 837, 998
DdeI	CTNAG	2 cut(s)	231, 968
DpnI	GATC	2 cut(s)	672, 1089
DpnII	GATC	2 cut(s)	670, 1087
DraI	TTTAAA	1 cut(s)	1051
Eam1104I	CTCTTC	2 cut(s)	218, 257
EarI	CTCTTC	2 cut(s)	218, 257
Eco130I	CCWWGG	1 cut(s)	721
Eco147I	AGGCCT	1 cut(s)	822
Eco31I	GGTCTC	1 cut(s)	220
Eco32I	GATATC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	977
Eco57I	CTGAAG	2 cut(s)	374, 930
Eco88I	CYCGRG	1 cut(s)	629
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	928
EcoRV	GATATC	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	721
EcoT22I	ATGCAT	1 cut(s)	961
ErhI	CCWWGG	1 cut(s)	721
FaeI	CATG	4 cut(s)	301, 403, 493, 665
FalI	AAGNNNNNCTT	4 cut(s)	528, 560, 928, 960
FatI	CATG	4 cut(s)	297, 399, 489, 661
Fnu4HI	GCNGC	2 cut(s)	318, 360
FokI	GGATG	1 cut(s)	1049
Fsp4HI	GCNGC	2 cut(s)	318, 360
FspBI	CTAG	1 cut(s)	894
GluI	GCNGC	2 cut(s)	318, 360
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	822
Hin1II	CATG	4 cut(s)	301, 403, 493, 665
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HindIII	AAGCTT	2 cut(s)	256, 902
HinfI	GANTC	3 cut(s)	5, 713, 889
HphI	GGTGA	1 cut(s)	933
Hpy166II	GTNNAC	2 cut(s)	36, 91
Hpy188I	TCNGA	6 cut(s)	10, 414, 613, 910, 955, 1139
Hpy188III	TCNNGA	5 cut(s)	23, 593, 631, 662, 975
Hpy8I	GTNNAC	2 cut(s)	36, 91
HpyAV	CCTTC	5 cut(s)	136, 261, 349, 908, 954
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4IV	ACGT	1 cut(s)	789
HpyCH4V	TGCA	5 cut(s)	320, 434, 656, 758, 959
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 431, 683
HpyF3I	CTNAG	2 cut(s)	231, 968
HpySE526I	ACGT	1 cut(s)	789
Hsp92II	CATG	4 cut(s)	301, 403, 493, 665
Kzo9I	GATC	2 cut(s)	670, 1087
LmnI	GCTCC	3 cut(s)	60, 301, 314
Lsp1109I	GCAGC	2 cut(s)	304, 371
LweI	GCATC	4 cut(s)	695, 745, 946, 968
MaeI	CTAG	1 cut(s)	894
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	2 cut(s)	330, 790
MalI	GATC	2 cut(s)	672, 1089
MboI	GATC	2 cut(s)	670, 1087
MboII	GAAGA	8 cut(s)	235, 274, 489, 878, 923, 1094, 1097, 1126
MflI	RGATCY	2 cut(s)	670, 1087
MhlI	GDGCHC	1 cut(s)	638
MluCI	AATT	4 cut(s)	292, 459, 581, 623
MlyI	GAGTC	2 cut(s)	722, 883
Mph1103I	ATGCAT	1 cut(s)	961
MroXI	GAANNNNTTC	2 cut(s)	738, 777
MseI	TTAA	2 cut(s)	984, 1050
MslI	CAYNNNNRTG	2 cut(s)	114, 645
MspR9I	CCNGG	1 cut(s)	930
MvaI	CCWGG	1 cut(s)	930
MwoI	GCNNNNNNNGC	3 cut(s)	68, 431, 683
NdeII	GATC	2 cut(s)	670, 1087
NlaIII	CATG	4 cut(s)	301, 403, 493, 665
NmuCI	GTSAC	2 cut(s)	330, 790
NsiI	ATGCAT	1 cut(s)	961
PaeR7I	CTCGAG	1 cut(s)	629
PagI	TCATGA	1 cut(s)	661
PceI	AGGCCT	1 cut(s)	822
PdmI	GAANNNNTTC	2 cut(s)	738, 777
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	319, 361
PleI	GAGTC	2 cut(s)	721, 883
PpsI	GAGTC	2 cut(s)	721, 883
Psp6I	CCWGG	1 cut(s)	928
PspGI	CCWGG	1 cut(s)	928
PspPI	GGNCC	1 cut(s)	977
PsuI	RGATCY	2 cut(s)	670, 1087
RsaI	GTAC	5 cut(s)	134, 243, 696, 838, 999
RsaNI	GTAC	5 cut(s)	133, 242, 695, 837, 998
RseI	CAYNNNNRTG	2 cut(s)	114, 645
SaqAI	TTAA	2 cut(s)	984, 1050
SatI	GCNGC	2 cut(s)	318, 360
Sau3AI	GATC	2 cut(s)	670, 1087
Sau96I	GGNCC	1 cut(s)	977
SchI	GAGTC	2 cut(s)	722, 883
ScrFI	CCNGG	1 cut(s)	930
SduI	GDGCHC	1 cut(s)	638
SfaNI	GCATC	4 cut(s)	695, 745, 946, 968
SfcI	CTRYAG	1 cut(s)	678
Sfr274I	CTCGAG	1 cut(s)	629
SinI	GGWCC	1 cut(s)	977
SlaI	CTCGAG	1 cut(s)	629
SmiMI	CAYNNNNRTG	2 cut(s)	114, 645
SmlI	CTYRAG	5 cut(s)	23, 545, 593, 629, 934
SmoI	CTYRAG	5 cut(s)	23, 545, 593, 629, 934
Sse9I	AATT	4 cut(s)	292, 459, 581, 623
SseBI	AGGCCT	1 cut(s)	822
SsiI	CCGC	1 cut(s)	884
SspI	AATATT	1 cut(s)	739
SspMI	CTAG	1 cut(s)	894
StuI	AGGCCT	1 cut(s)	822
StyD4I	CCNGG	1 cut(s)	928
StyI	CCWWGG	1 cut(s)	721
TaaI	ACNGT	1 cut(s)	836
TaiI	ACGT	1 cut(s)	792
TaqI	TCGA	2 cut(s)	442, 630
TasI	AATT	4 cut(s)	292, 459, 581, 623
TatI	WGTACW	3 cut(s)	241, 694, 997
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	984, 1050
Tru9I	TTAA	2 cut(s)	984, 1050
TscAI	CASTG	2 cut(s)	223, 384
TseFI	GTSAC	2 cut(s)	330, 790
TseI	GCWGC	2 cut(s)	317, 359
Tsp45I	GTSAC	2 cut(s)	330, 790
TspDTI	ATGAA	5 cut(s)	155, 286, 381, 388, 747
TspGWI	ACGGA	2 cut(s)	469, 809
TspRI	CASTG	2 cut(s)	223, 384
VpaK11BI	GGWCC	1 cut(s)	977
XagI	CCTNNNNNAGG	1 cut(s)	140
XapI	RAATTY	2 cut(s)	459, 581
XcmI	CCANNNNNNNNNTGG	2 cut(s)	113, 215
XhoI	CTCGAG	1 cut(s)	629
XmnI	GAANNNNTTC	2 cut(s)	738, 777
XspI	CTAG	1 cut(s)	894
Zsp2I	ATGCAT	1 cut(s)	961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.