Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002487

Physical Location & Seq

Genomic Coordinates Reverse (-)

48869030 .. 48870018

Gene Structure 989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029772

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTTTAGTAGGGAAAAAGACGTGGATAGGAAATTATGTCTTGAGAGGCCAGATGAAAAATATACTGTGGAGCTCGATCAAGTTCAGGTCATGGAAAACAACATTGATCTATTGTTTGGTCCGTCTGATGGTGATGATGTAAAGCTGGTTGAATCTTGTGGGGAGGGTTCAAACAAGGAGACTCCTAGCAAAGAGCTTTCCCAAGAAGGTTGCTTGCCGCAAGTCCCTTCAGGTTCAGAGGCATCAAAACTGAAGTCTGGACCAGTTAAAGTTGCATTCGTACAAATTAAAAAAAAACCCATAACATCAGCCTTAAATACATCTAGAATCCATTCTAGAGAAACTGACATCAGTAGCCATAAGGAAGATCCATTGTTCATCTTGTTTTCTAGTGCCAATGTAAATGATAGTCTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4477

Protein Analysis

140

Amino Acids

15.37

Weight (kDa)

4.98

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50910 AT1G50910
fragaria_vesca	FvH4_3g22120 FvH4_3g22120
malus_domestica	MD03G1208200.v1.1 MD11G1222400.v1.1
prunus_persica	Prupe.4G208500_v2.0.a1
pyrus_communis	pycom11g19620
rosa_chinensis	RchiOBHm_Chr1g0330851 RchiOBHm_Chr5g0037971
rosa_laevigata	RLG00000022534 RLG00000029769 RLG00000029772 RLG00000029783 RLG00000033828
rosa_multiflora	Rmu_sc0002621.1_g000008 Rmu_sc0002621.1_g000015 Rmu_sc0002670.1_g000013 Rmu_sc0002899.1_g000005 Rmu_sc0010964.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319700
rosa_rugosa	Rorug01G0090700 Rorug05G0169800
rosa_samantha	Rh1AG112300 Rh1BG086400 Rh1BG114800 Rh1CG107700 Rh1CG109400 Rh1DG117800 Rh3BG367100 Rh3BG367300 Rh5AG258000 Rh5BG261000 Rh5CG293300 Rh5DG270200 Rh6BG121000 Rh6BG268100 Rh6CG119300
rosa_wichuraiana	Rw1G009090 Rw5G023910 Rw5G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	1 cut(s)	362
AcuI	CTGAAG	2 cut(s)	213, 272
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	152, 171
AjiI	CACGTC	1 cut(s)	22
AluBI	AGCT	3 cut(s)	73, 145, 196
AluI	AGCT	3 cut(s)	73, 145, 196
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	2 cut(s)	173, 416
AlwI	GGATC	1 cut(s)	362
AoxI	GGCC	1 cut(s)	47
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
Asp700I	GAANNNNTTC	1 cut(s)	331
AspS9I	GGNCC	2 cut(s)	119, 260
AsuHPI	GGTGA	1 cut(s)	143
AvaII	GGWCC	2 cut(s)	119, 260
BanII	GRGCYC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	75
BccI	CCATC	1 cut(s)	122
BcoDI	GTCTC	2 cut(s)	173, 416
BfaI	CTAG	4 cut(s)	186, 324, 336, 390
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
Bme18I	GGWCC	2 cut(s)	119, 260
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	119, 260
BmsI	GCATC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	263
BshFI	GGCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	2 cut(s)	173, 416
BsmFI	GGGAC	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	3 cut(s)	76, 106, 367
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	49
BspPI	GGATC	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	263
BssMI	GATC	3 cut(s)	76, 106, 367
Bst4CI	ACNGT	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	215
BstKTI	GATC	3 cut(s)	79, 109, 370
BstMAI	GTCTC	2 cut(s)	173, 416
BstMBI	GATC	3 cut(s)	76, 106, 367
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	49
BtrI	CACGTC	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	215
Cfr13I	GGNCC	2 cut(s)	119, 260
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	6 cut(s)	49, 73, 145, 196, 311, 357
CviKI_1	RGCY	6 cut(s)	49, 73, 145, 196, 311, 357
CviQI	GTAC	1 cut(s)	281
DpnI	GATC	3 cut(s)	78, 108, 369
DpnII	GATC	3 cut(s)	76, 106, 367
Ecl136II	GAGCTC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	75
Eco47I	GGWCC	2 cut(s)	119, 260
Eco53kI	GAGCTC	1 cut(s)	73
Eco57I	CTGAAG	2 cut(s)	213, 272
EcoICRI	GAGCTC	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	1 cut(s)	94
FaiI	YATR	5 cut(s)	37, 63, 92, 302, 360
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	218
FspBI	CTAG	4 cut(s)	186, 324, 336, 390
GluI	GCNGC	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	94
HinfI	GANTC	3 cut(s)	152, 181, 327
HphI	GGTGA	1 cut(s)	143
Hpy188I	TCNGA	2 cut(s)	127, 238
Hpy188III	TCNNGA	4 cut(s)	41, 258, 324, 336
HpyAV	CCTTC	2 cut(s)	200, 237
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	1 cut(s)	275
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	76, 106, 367
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	6 cut(s)	63, 71, 131, 216, 243, 276
LweI	GCATC	1 cut(s)	251
MaeI	CTAG	4 cut(s)	186, 324, 336, 390
MaeII	ACGT	1 cut(s)	21
MalI	GATC	3 cut(s)	78, 108, 369
MboI	GATC	3 cut(s)	76, 106, 367
MboII	GAAGA	1 cut(s)	377
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	2 cut(s)	32, 285
MlyI	GAGTC	1 cut(s)	175
MnlI	CCTC	3 cut(s)	39, 157, 232
MroXI	GAANNNNTTC	1 cut(s)	331
MseI	TTAA	3 cut(s)	267, 288, 314
Mva1269I	GAATGC	1 cut(s)	275
NdeII	GATC	3 cut(s)	76, 106, 367
NlaIII	CATG	1 cut(s)	94
PctI	GAATGC	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	152, 327
PkrI	GCNGC	1 cut(s)	219
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	75
PspPI	GGNCC	2 cut(s)	119, 260
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SacI	GAGCTC	1 cut(s)	75
SaqAI	TTAA	3 cut(s)	267, 288, 314
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	3 cut(s)	76, 106, 367
Sau96I	GGNCC	2 cut(s)	119, 260
SchI	GAGTC	1 cut(s)	175
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	7 cut(s)	24, 75, 90, 147, 198, 211, 235
SfaNI	GCATC	1 cut(s)	251
SinI	GGWCC	2 cut(s)	119, 260
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	2 cut(s)	32, 285
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	4 cut(s)	186, 324, 336, 390
SstI	GAGCTC	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	32, 285
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	2 cut(s)	152, 327
Tru1I	TTAA	3 cut(s)	267, 288, 314
Tru9I	TTAA	3 cut(s)	267, 288, 314
TspDTI	ATGAA	2 cut(s)	69, 367
TspGWI	ACGGA	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	119, 260
XbaI	TCTAGA	2 cut(s)	323, 335
XmnI	GAANNNNTTC	1 cut(s)	331
XspI	CTAG	4 cut(s)	186, 324, 336, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.