Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002487

Physical Location & Seq

Genomic Coordinates Forward (+)

32755771 .. 32759756

Gene Structure 3986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033828

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGATTCCGAAGCAGAAGCTCTTGAGGAGAAGTTGATGTCTTTGCTCGGTCAGCTCCGAGCTGAGTGTGCCATTCTTGAAAGAGTGGTCTACAAGAACAAGAATCAGCATAGACGTTCCTCTTACTTCCAGTACCTAATGAAGTCCACTAATTATAATCTTTCTTCAGCTCTGAATCCAAAACATAGTTTTATGGTTGAACCAATGTTGAAGGCTGCTATTCAGATATCTACATTGCTGGCTCGATCTTTTTTCATGGGATTCTCTTTGACTATCTTAGCTTTGCTTGCACGACTTCGAGTTTTGGTTCAACAGATTCTGCTTGATGTTGTTTCAGTATTCAACATGGTTTCTTCTCTTTCCCAAAAGAAGCAATCAGTTAAAATAAATCAAGAAGGAGTTGAGGTCTTCAGGGAGTTTTACCCTACACAAGAGGATTTTATCACTTTGGAGTGCGTGTGGAAATCTGATAAATTTGACTTGCTTGAGAGGACACATAAGAGCCAGATTGCAAGTCCTGGTGTGGATATTTCTTTAGGGACATCATCTGTGCTTTATCGAAGTATTGAGTCTTCCCTTGGAGATGACGAAATGTCTGAGAGGCCGGATGAAAACCATACTGCTGAGCTCGATCAAGTTCAGGTCATGGAGAACAACATTAATCTATTGTCTGGTCCATCCGATGGTGATGATGTAAAGCTGGTTGAACCTTGTGGGGAGGGTTCAAACATGGAAGACGCTCCTAGCAAAGAGCTTTCCCAAGAAGGTTGCTTGCCACAAGTCTCATCAGGTTCAGAGGCATCAAAACTGAAGTCTGGACCAGTTAAAGTGGCATTCGTACAAATTAAAAAACCCATAACATCATCCGCAAATACATCTGGACTCCATTTTGGAGAAACTGACATCATTAACCATAATAAGGAAGATCCATTGTTCAGCTTGCTTTCTAGTGCCAATGTAAAGAATAGTCTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4477

Protein Analysis

326

Amino Acids

36.09

Weight (kDa)

5.14

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50910 AT1G50910
fragaria_vesca	FvH4_3g22120 FvH4_3g22120
malus_domestica	MD03G1208200.v1.1 MD11G1222400.v1.1
prunus_persica	Prupe.4G208500_v2.0.a1
pyrus_communis	pycom11g19620
rosa_chinensis	RchiOBHm_Chr1g0330851 RchiOBHm_Chr5g0037971
rosa_laevigata	RLG00000022534 RLG00000029769 RLG00000029772 RLG00000029783 RLG00000033828
rosa_multiflora	Rmu_sc0002621.1_g000008 Rmu_sc0002621.1_g000015 Rmu_sc0002670.1_g000013 Rmu_sc0002899.1_g000005 Rmu_sc0010964.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319700
rosa_rugosa	Rorug01G0090700 Rorug05G0169800
rosa_samantha	Rh1AG112300 Rh1BG086400 Rh1BG114800 Rh1CG107700 Rh1CG109400 Rh1DG117800 Rh3BG367100 Rh3BG367300 Rh5AG258000 Rh5BG261000 Rh5CG293300 Rh5DG270200 Rh6BG121000 Rh6BG268100 Rh6CG119300
rosa_wichuraiana	Rw1G009090 Rw5G023910 Rw5G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AccB7I	CCANNNNNTGG	1 cut(s)	683
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	1 cut(s)	867
AclWI	GGATC	1 cut(s)	920
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	3 cut(s)	150, 394, 830
AfaI	GTAC	2 cut(s)	134, 840
AfiI	CCNNNNNNNGG	2 cut(s)	683, 919
AgsI	TTSAA	7 cut(s)	80, 200, 211, 311, 343, 707, 726
AhdI	GACNNNNNGTC	1 cut(s)	592
AjnI	CCWGG	1 cut(s)	517
AluBI	AGCT	9 cut(s)	20, 55, 62, 170, 281, 628, 700, 754, 939
AluI	AGCT	9 cut(s)	20, 55, 62, 170, 281, 628, 700, 754, 939
Alw21I	GWGCWC	1 cut(s)	630
Alw26I	GTCTC	2 cut(s)	787, 974
AlwI	GGATC	1 cut(s)	920
AlwNI	CAGNNNCTG	1 cut(s)	319
AoxI	GGCC	1 cut(s)	602
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	473
ArsI	GACNNNNNNTTYG	2 cut(s)	797, 829
AseI	ATTAAT	1 cut(s)	660
AspS9I	GGNCC	2 cut(s)	674, 818
AsuHPI	GGTGA	1 cut(s)	698
AvaII	GGWCC	2 cut(s)	674, 818
BanII	GRGCYC	1 cut(s)	630
BarI	GAAGNNNNNNTAC	2 cut(s)	556, 588
BbsI	GAAGAC	3 cut(s)	400, 564, 741
Bbv12I	GWGCWC	1 cut(s)	630
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	2 cut(s)	677, 685
BciT130I	CCWGG	1 cut(s)	519
BcoDI	GTCTC	2 cut(s)	787, 974
BfaI	CTAG	2 cut(s)	744, 948
BisI	GCNGC	1 cut(s)	216
BlpI	GCTNAGC	1 cut(s)	624
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	2 cut(s)	674, 818
BmeRI	GACNNNNNGTC	1 cut(s)	592
BmgT120I	GGNCC	2 cut(s)	674, 818
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	1 cut(s)	809
BpiI	GAAGAC	3 cut(s)	400, 564, 741
Bpu1102I	GCTNAGC	1 cut(s)	624
BpuEI	CTTGAG	2 cut(s)	44, 506
BsaJI	CCNNGG	1 cut(s)	577
BsaXI	ACNNNNNCTCC	4 cut(s)	390, 420, 443, 473
Bsc4I	CCNNNNNNNGG	2 cut(s)	683, 919
Bse1I	ACTGG	2 cut(s)	130, 821
Bse3DI	GCAATG	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	1 cut(s)	577
BseGI	GGATG	3 cut(s)	613, 677, 863
BseLI	CCNNNNNNNGG	2 cut(s)	683, 919
BseMI	GCAATG	1 cut(s)	233
BseMII	CTCAG	3 cut(s)	54, 588, 615
BseNI	ACTGG	2 cut(s)	130, 821
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	202
BshFI	GGCC	1 cut(s)	604
BsiHKAI	GWGCWC	1 cut(s)	630
BsiSI	CCGG	1 cut(s)	605
BslFI	GGGAC	1 cut(s)	553
BslI	CCNNNNNNNGG	2 cut(s)	683, 919
BsmAI	GTCTC	2 cut(s)	787, 974
BsmFI	GGGAC	1 cut(s)	553
BsmI	GAATGC	1 cut(s)	833
BsnI	GGCC	1 cut(s)	604
Bsp1286I	GDGCHC	1 cut(s)	630
Bsp143I	GATC	3 cut(s)	245, 631, 925
Bsp1720I	GCTNAGC	1 cut(s)	624
BspACI	CCGC	1 cut(s)	867
BspANI	GGCC	1 cut(s)	604
BspCNI	CTCAG	3 cut(s)	55, 589, 616
BspPI	GGATC	1 cut(s)	920
BsrDI	GCAATG	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	130, 821
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	3 cut(s)	245, 631, 925
BssT1I	CCWWGG	1 cut(s)	577
Bst2UI	CCWGG	1 cut(s)	519
BstC8I	GCNNGC	4 cut(s)	240, 288, 773, 941
BstDEI	CTNAG	4 cut(s)	63, 277, 597, 624
BstF5I	GGATG	3 cut(s)	613, 677, 863
BstKTI	GATC	3 cut(s)	248, 634, 928
BstMAI	GTCTC	2 cut(s)	787, 974
BstMBI	GATC	3 cut(s)	245, 631, 925
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 68, 287
BstNI	CCWGG	1 cut(s)	519
BstSCI	CCNGG	1 cut(s)	517
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	3 cut(s)	400, 564, 741
BstX2I	RGATCY	1 cut(s)	925
BstYI	RGATCY	1 cut(s)	925
BsuRI	GGCC	1 cut(s)	604
BtsCI	GGATG	3 cut(s)	613, 677, 863
Cac8I	GCNNGC	4 cut(s)	240, 288, 773, 941
CaiI	CAGNNNCTG	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	674, 818
CseI	GACGC	1 cut(s)	746
Csp6I	GTAC	2 cut(s)	133, 839
CviAII	CATG	4 cut(s)	256, 346, 646, 730
CviQI	GTAC	2 cut(s)	133, 839
DdeI	CTNAG	4 cut(s)	63, 277, 597, 624
DpnI	GATC	3 cut(s)	247, 633, 927
DpnII	GATC	3 cut(s)	245, 631, 925
DriI	GACNNNNNGTC	1 cut(s)	592
Eam1105I	GACNNNNNGTC	1 cut(s)	592
Ecl136II	GAGCTC	1 cut(s)	628
Eco130I	CCWWGG	1 cut(s)	577
Eco24I	GRGCYC	1 cut(s)	630
Eco32I	GATATC	1 cut(s)	228
Eco47I	GGWCC	2 cut(s)	674, 818
Eco53kI	GAGCTC	1 cut(s)	628
Eco57I	CTGAAG	3 cut(s)	150, 394, 830
EcoICRI	GAGCTC	1 cut(s)	628
EcoRII	CCWGG	1 cut(s)	517
EcoRV	GATATC	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	630
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	4 cut(s)	259, 349, 649, 733
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	4 cut(s)	255, 345, 645, 729
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	3 cut(s)	620, 664, 850
FriOI	GRGCYC	1 cut(s)	630
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	2 cut(s)	744, 948
GluI	GCNGC	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	604
HapII	CCGG	1 cut(s)	605
HgaI	GACGC	1 cut(s)	746
Hin1II	CATG	4 cut(s)	259, 349, 649, 733
HinfI	GANTC	7 cut(s)	5, 103, 175, 261, 316, 569, 882
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	2 cut(s)	91, 147
Hpy188I	TCNGA	9 cut(s)	10, 59, 174, 225, 469, 598, 682, 796, 977
Hpy188III	TCNNGA	5 cut(s)	23, 77, 392, 816, 879
Hpy8I	GTNNAC	2 cut(s)	91, 147
HpyAV	CCTTC	3 cut(s)	205, 389, 758
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	290, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 68, 287
HpyF3I	CTNAG	4 cut(s)	63, 277, 597, 624
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	4 cut(s)	259, 349, 649, 733
Kzo9I	GATC	3 cut(s)	245, 631, 925
LmnI	GCTCC	2 cut(s)	60, 745
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	1 cut(s)	809
MaeI	CTAG	2 cut(s)	744, 948
MaeII	ACGT	1 cut(s)	115
MalI	GATC	3 cut(s)	247, 633, 927
MboI	GATC	3 cut(s)	245, 631, 925
MboII	GAAGA	7 cut(s)	156, 345, 400, 564, 746, 935, 964
MflI	RGATCY	1 cut(s)	925
MhlI	GDGCHC	1 cut(s)	630
MluCI	AATT	3 cut(s)	151, 473, 843
MlyI	GAGTC	2 cut(s)	578, 876
MnlI	CCTC	8 cut(s)	19, 130, 397, 427, 483, 594, 712, 790
MseI	TTAA	5 cut(s)	381, 660, 825, 846, 909
MspI	CCGG	1 cut(s)	605
MspR9I	CCNGG	1 cut(s)	519
Mva1269I	GAATGC	1 cut(s)	833
MvaI	CCWGG	1 cut(s)	519
MwoI	GCNNNNNNNGC	3 cut(s)	52, 68, 287
NdeII	GATC	3 cut(s)	245, 631, 925
NlaIII	CATG	4 cut(s)	259, 349, 649, 733
PctI	GAATGC	1 cut(s)	833
PfeI	GAWTC	5 cut(s)	5, 103, 175, 261, 316
PflMI	CCANNNNNTGG	1 cut(s)	683
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	2 cut(s)	577, 876
PpsI	GAGTC	2 cut(s)	577, 876
PshBI	ATTAAT	1 cut(s)	660
PsiI	TTATAA	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	630
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspPI	GGNCC	2 cut(s)	674, 818
PstNI	CAGNNNCTG	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	925
RsaI	GTAC	2 cut(s)	134, 840
RsaNI	GTAC	2 cut(s)	133, 839
SacI	GAGCTC	1 cut(s)	630
SaqAI	TTAA	5 cut(s)	381, 660, 825, 846, 909
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	3 cut(s)	245, 631, 925
Sau96I	GGNCC	2 cut(s)	674, 818
SchI	GAGTC	2 cut(s)	578, 876
ScrFI	CCNGG	1 cut(s)	519
SduI	GDGCHC	1 cut(s)	630
SfaNI	GCATC	1 cut(s)	809
SinI	GGWCC	2 cut(s)	674, 818
SmlI	CTYRAG	2 cut(s)	23, 485
SmoI	CTYRAG	2 cut(s)	23, 485
Sse9I	AATT	3 cut(s)	151, 473, 843
SsiI	CCGC	1 cut(s)	867
SspMI	CTAG	2 cut(s)	744, 948
SstI	GAGCTC	1 cut(s)	630
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	1 cut(s)	577
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	4 cut(s)	244, 298, 559, 630
TaqII	GACCGA	1 cut(s)	38
TasI	AATT	3 cut(s)	151, 473, 843
TfiI	GAWTC	5 cut(s)	5, 103, 175, 261, 316
Tru1I	TTAA	5 cut(s)	381, 660, 825, 846, 909
Tru9I	TTAA	5 cut(s)	381, 660, 825, 846, 909
TseI	GCWGC	1 cut(s)	215
TspDTI	ATGAA	3 cut(s)	155, 244, 624
Van91I	CCANNNNNTGG	1 cut(s)	683
VpaK11BI	GGWCC	2 cut(s)	674, 818
VspI	ATTAAT	1 cut(s)	660
XapI	RAATTY	1 cut(s)	473
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	2 cut(s)	744, 948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.