Rw1G009090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002487
Physical Location & Seq
Reverse (-)
20041820 .. 20046599
4780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009090.1

Sequence Viewer

Length: 783 bp
ATGGATTCTGAAGCAGAAGCTCTTGAGGAGAAACTGACGTCTTTGTTTGGTCAGCTCCGAGCTGAGTGTGCTATTCTTGAAAGAGTGGTCTACAAGAACAAGAACCAGCATAGACGTTCCTCGTACTTCCAGTACCTAATGAAGGTAAGGAGGGATTTGAGGCTTTTACAATCAACTAAGTTGGAGGAGATTTTGGGCTGCTGTTTCCAAAGTATCACTGGAAAGAGACCCAAGCAAAAGGTGCATATATTAGAAAGTTTGAAGAGAAGAAAATGTGAAAGTGGAAAATATAATTTCATGGAACGACTTCTGGGAGCTGCACGTCTTTTATCACAGATGGTTGAACCAATGTTGAAGGCTGCTATTCAGATATCTGCATTACTGGCTCGATCTTTTTTCATGGGATTCTCTTTGACTATCTTAGCTTTGCTTGCACGACTTCGAGTTTTGGTTCAACAGATTCTGCTTGATGTTGTTTCAGTATTCAACATGGTTTCTTCTCTCTCCCAAAAGAAGCAATCAGTTAAAATAAATCAAGAAGGAGTTGAGGTCTTCAGGGAGTTTTACCCTACACAAGAGGATTTTATCACTCTGGAGTGCGTGTGGAAATCTGATAAATTTGACTTGGTTGAGAGGACACAAAAGAGCCAGATTGCAGTGTCAGGGCACACTTCTGCGGCGGTTGAGAAACCCCTGTACAGAAGGGGAAAAAAGGCATCAATACTTAAGTTAATAGGAATATCAGAAAACTCAATCTTTAGTGTGGTCTACGGAAGATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4477

Protein Analysis

260

Amino Acids

29.89

Weight (kDa)

9.74

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NEPRO_N PF14780 10 - 163 4.8e-15 Nucleolus and neural progenitor protein, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 41
AccI GTMKAC 2 cut(s) 90, 768
AciI CCGC 2 cut(s) 677, 680
AcsI RAATTY 1 cut(s) 617
AcuI CTGAAG 2 cut(s) 30, 538
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 3 cut(s) 125, 134, 698
AfiI CCNNNNNNNGG 1 cut(s) 142
AflII CTTAAG 1 cut(s) 725
AgsI TTSAA 6 cut(s) 80, 262, 344, 355, 455, 487
AjiI CACGTC 1 cut(s) 323
AluBI AGCT 5 cut(s) 20, 55, 62, 317, 425
AluI AGCT 5 cut(s) 20, 55, 62, 317, 425
Alw26I GTCTC 1 cut(s) 220
AlwNI CAGNNNCTG 1 cut(s) 463
ApeKI GCWGC 3 cut(s) 198, 317, 359
ApoI RAATTY 1 cut(s) 617
Asp700I GAANNNNTTC 1 cut(s) 306
BaeGI GKGCMC 1 cut(s) 669
BbsI GAAGAC 1 cut(s) 544
BbvI GCAGC 3 cut(s) 185, 304, 346
BccI CCATC 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 220
BfrI CTTAAG 1 cut(s) 725
BisI GCNGC 4 cut(s) 199, 318, 360, 678
BlsI GCNGC 4 cut(s) 200, 319, 361, 679
BmgBI CACGTC 1 cut(s) 323
BmsI GCATC 1 cut(s) 725
BpiI GAAGAC 1 cut(s) 544
BpmI CTGGAG 1 cut(s) 614
BpuEI CTTGAG 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 220
BsaXI ACNNNNNCTCC 4 cut(s) 534, 564, 587, 617
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 3 cut(s) 130, 223, 387
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 3 cut(s) 130, 223, 387
BseRI GAGGAG 2 cut(s) 41, 200
BseSI GKGCMC 1 cut(s) 669
BseXI GCAGC 3 cut(s) 185, 304, 346
BsgI GTGCAG 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 220
Bso31I GGTCTC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 669
Bsp1407I TGTACA 1 cut(s) 696
Bsp143I GATC 1 cut(s) 389
BspACI CCGC 2 cut(s) 677, 680
BspCNI CTCAG 1 cut(s) 55
BspTI CTTAAG 1 cut(s) 725
BspTNI GGTCTC 1 cut(s) 220
BsrGI TGTACA 1 cut(s) 696
BsrI ACTGG 3 cut(s) 130, 223, 387
BssMI GATC 1 cut(s) 389
BssNI GRCGYC 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 38
BstAFI CTTAAG 1 cut(s) 725
BstAPI GCANNNNNTGC 1 cut(s) 241
BstAUI TGTACA 1 cut(s) 696
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 3 cut(s) 63, 177, 421
BstENI CCTNNNNNAGG 1 cut(s) 140
BstKTI GATC 1 cut(s) 392
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 1 cut(s) 389
BstMWI GCNNNNNNNGC 4 cut(s) 68, 241, 383, 431
BstSLI GKGCMC 1 cut(s) 669
BstV1I GCAGC 3 cut(s) 185, 304, 346
BstV2I GAAGAC 1 cut(s) 544
BtrI CACGTC 1 cut(s) 323
BtsI GCAGTG 1 cut(s) 663
BtsIMutI CAGTG 2 cut(s) 216, 663
Cac8I GCNNGC 1 cut(s) 432
CaiI CAGNNNCTG 1 cut(s) 463
Csp6I GTAC 3 cut(s) 124, 133, 697
CviAII CATG 3 cut(s) 298, 400, 490
CviQI GTAC 3 cut(s) 124, 133, 697
DdeI CTNAG 3 cut(s) 63, 177, 421
DpnI GATC 1 cut(s) 391
DpnII GATC 1 cut(s) 389
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco31I GGTCTC 1 cut(s) 220
Eco32I GATATC 1 cut(s) 372
Eco57I CTGAAG 2 cut(s) 30, 538
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoRV GATATC 1 cut(s) 372
FaeI CATG 3 cut(s) 301, 403, 493
FaiI YATR 7 cut(s) 111, 246, 248, 291, 299, 401, 491
FatI CATG 3 cut(s) 297, 399, 489
FblI GTMKAC 2 cut(s) 90, 768
Fnu4HI GCNGC 4 cut(s) 199, 318, 360, 678
Fsp4HI GCNGC 4 cut(s) 199, 318, 360, 678
GluI GCNGC 4 cut(s) 199, 318, 360, 678
GsuI CTGGAG 1 cut(s) 614
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 3 cut(s) 301, 403, 493
HinfI GANTC 3 cut(s) 5, 405, 460
Hpy166II GTNNAC 2 cut(s) 91, 769
Hpy188I TCNGA 5 cut(s) 10, 59, 369, 613, 745
Hpy188III TCNNGA 4 cut(s) 23, 77, 536, 593
Hpy8I GTNNAC 2 cut(s) 91, 769
HpyAV CCTTC 4 cut(s) 136, 349, 533, 696
HpyCH4IV ACGT 3 cut(s) 38, 115, 322
HpyCH4V TGCA 5 cut(s) 244, 320, 377, 434, 656
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 241, 383, 431
HpyF3I CTNAG 3 cut(s) 63, 177, 421
HpySE526I ACGT 3 cut(s) 38, 115, 322
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 3 cut(s) 301, 403, 493
Kzo9I GATC 1 cut(s) 389
LmnI GCTCC 2 cut(s) 60, 314
Lsp1109I GCAGC 3 cut(s) 185, 304, 346
LweI GCATC 1 cut(s) 725
MaeII ACGT 3 cut(s) 38, 115, 322
MalI GATC 1 cut(s) 391
MboI GATC 1 cut(s) 389
MboII GAAGA 4 cut(s) 274, 279, 489, 544
MhlI GDGCHC 1 cut(s) 669
MluCI AATT 2 cut(s) 292, 617
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 8 cut(s) 19, 130, 144, 153, 178, 541, 571, 627
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 4 cut(s) 525, 726, 731, 781
MspCI CTTAAG 1 cut(s) 725
MwoI GCNNNNNNNGC 4 cut(s) 68, 241, 383, 431
NdeII GATC 1 cut(s) 389
NlaIII CATG 3 cut(s) 301, 403, 493
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 3 cut(s) 5, 405, 460
PkrI GCNGC 4 cut(s) 200, 319, 361, 679
PstNI CAGNNNCTG 1 cut(s) 463
RsaI GTAC 3 cut(s) 125, 134, 698
RsaNI GTAC 3 cut(s) 124, 133, 697
SaqAI TTAA 4 cut(s) 525, 726, 731, 781
SatI GCNGC 4 cut(s) 199, 318, 360, 678
Sau3AI GATC 1 cut(s) 389
SduI GDGCHC 1 cut(s) 669
SfaNI GCATC 1 cut(s) 725
SmlI CTYRAG 2 cut(s) 23, 725
SmoI CTYRAG 2 cut(s) 23, 725
Sse9I AATT 2 cut(s) 292, 617
SsiI CCGC 2 cut(s) 677, 680
TaiI ACGT 3 cut(s) 41, 118, 325
TaqI TCGA 2 cut(s) 388, 442
TasI AATT 2 cut(s) 292, 617
TatI WGTACW 1 cut(s) 696
TauI GCSGC 1 cut(s) 680
TfiI GAWTC 3 cut(s) 5, 405, 460
Tru1I TTAA 4 cut(s) 525, 726, 731, 781
Tru9I TTAA 4 cut(s) 525, 726, 731, 781
TscAI CASTG 2 cut(s) 223, 663
TseI GCWGC 3 cut(s) 198, 317, 359
TspDTI ATGAA 3 cut(s) 155, 286, 388
TspRI CASTG 2 cut(s) 223, 663
Vha464I CTTAAG 1 cut(s) 725
XagI CCTNNNNNAGG 1 cut(s) 140
XapI RAATTY 1 cut(s) 617
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
XmiI GTMKAC 2 cut(s) 90, 768
XmnI GAANNNNTTC 1 cut(s) 306
ZraI GACGTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.