Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002621.1

Orthogroup ID

OG0002487

Physical Location & Seq

Genomic Coordinates Forward (+)

33601 .. 36384

Gene Structure 2784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002621.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atgaaattatgtcttgagaggccagatgaaaaacatactgtggagctcgatcaagttcaggtcatggaaaacaacattgatctattgtctggttcgtccgatggtgatgatgtaaagctggttgaatcttgtggggagggttcaaacaaggagactcctagcaaagagctttcccaagaaggttgcttgccgcaagtcccttcaggttcagaggcatcaaaactgaagtctggaccagttaaagtcgcattttttgggattgattttggagccgcttttggggctgcttgtgcttttgggcttacgccctcaaaatcctgcaaccaccgcctcaaatatcgaagccctaatcccaaggagcccagaaccggcggcggaaccactggaaccggccggaatcgacctgaaccggtcgtcggaaaatccgaacgggtcactgtcctgcgcacccctgtgcctgccccttgcgagatatgccgacagctgccgagatctgtcgagccctgtgcctgcatctgccgaagcctgcgcgcatctgccgagcacctgccgaagcgtctgcaagcatctgccgagcgcctgccgaagcatctgcaagcatctgtcgagcacctgccgaagcgtctgcgagccctgccgaagcgcctgcgagcccctgtcgacagctgccgacagcccctgcacgcatcctaccgagacctgccgagcgcccctgcacagcccctgcagcagccccgcacaagccctgcagcagcccccgcaagcctccacaacagccctgcacagtccggcctagctccgaccacctctgccggccaccagtttccggccacttttccggcgacctccggcgaccctttttcggcccatctacagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4477

Protein Analysis

292

Amino Acids

31.19

Weight (kDa)

9.09

Isoelectric Point (pI)

67.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50910 AT1G50910
fragaria_vesca	FvH4_3g22120 FvH4_3g22120
malus_domestica	MD03G1208200.v1.1 MD11G1222400.v1.1
prunus_persica	Prupe.4G208500_v2.0.a1
pyrus_communis	pycom11g19620
rosa_chinensis	RchiOBHm_Chr1g0330851 RchiOBHm_Chr5g0037971
rosa_laevigata	RLG00000022534 RLG00000029769 RLG00000029772 RLG00000029783 RLG00000033828
rosa_multiflora	Rmu_sc0002621.1_g000008 Rmu_sc0002621.1_g000015 Rmu_sc0002670.1_g000013 Rmu_sc0002899.1_g000005 Rmu_sc0010964.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319700
rosa_rugosa	Rorug01G0090700 Rorug05G0169800
rosa_samantha	Rh1AG112300 Rh1BG086400 Rh1BG114800 Rh1CG107700 Rh1CG109400 Rh1DG117800 Rh3BG367100 Rh3BG367300 Rh5AG258000 Rh5BG261000 Rh5CG293300 Rh5DG270200 Rh6BG121000 Rh6BG268100 Rh6CG119300
rosa_wichuraiana	Rw1G009090 Rw5G023910 Rw5G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	555, 621
Acc16I	TGCGCA	1 cut(s)	446
Acc36I	ACCTGC	3 cut(s)	555, 621, 708
AccI	GTMKAC	1 cut(s)	660
AccII	CGCG	1 cut(s)	531
AciI	CCGC	7 cut(s)	191, 273, 328, 372, 375, 736, 759
AcoI	YGGCCR	3 cut(s)	391, 814, 828
AcuI	CTGAAG	2 cut(s)	186, 245
AfiI	CCNNNNNNNGG	5 cut(s)	279, 368, 416, 826, 862
AgeI	ACCGGT	1 cut(s)	409
AgsI	TTSAA	2 cut(s)	125, 144
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	6 cut(s)	46, 118, 169, 484, 666, 797
AluI	AGCT	6 cut(s)	46, 118, 169, 484, 666, 797
Alw21I	GWGCWC	3 cut(s)	48, 546, 612
Alw26I	GTCTC	2 cut(s)	146, 690
AlwNI	CAGNNNCTG	2 cut(s)	679, 724
AoxI	GGCC	6 cut(s)	20, 391, 790, 814, 828, 864
ApeKI	GCWGC	7 cut(s)	284, 484, 666, 727, 730, 749, 752
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AsiGI	ACCGGT	1 cut(s)	409
AspLEI	GCGC	6 cut(s)	447, 531, 533, 579, 645, 710
AspS9I	GGNCC	2 cut(s)	233, 865
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	233
BanII	GRGCYC	5 cut(s)	48, 363, 504, 634, 655
Bbv12I	GWGCWC	3 cut(s)	48, 546, 612
BbvI	GCAGC	7 cut(s)	271, 471, 653, 739, 742, 761, 764
BccI	CCATC	2 cut(s)	95, 876
BcoDI	GTCTC	2 cut(s)	146, 690
BfaI	CTAG	2 cut(s)	159, 794
BfmI	CTRYAG	3 cut(s)	725, 747, 872
BfoI	RGCGCY	3 cut(s)	580, 646, 711
BfuAI	ACCTGC	3 cut(s)	555, 621, 708
BglII	AGATCT	1 cut(s)	491
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	233, 865
BmiI	GGNNCC	4 cut(s)	271, 360, 379, 388
BmsI	GCATC	7 cut(s)	224, 522, 542, 575, 598, 608, 695
BpuEI	CTTGAG	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	690
BsaJI	CCNNGG	1 cut(s)	354
BsaWI	WCCGGW	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	5 cut(s)	279, 368, 416, 826, 862
Bse118I	RCCGGY	4 cut(s)	368, 389, 409, 812
Bse1I	ACTGG	3 cut(s)	236, 388, 820
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	686
BseLI	CCNNNNNNNGG	5 cut(s)	279, 368, 416, 826, 862
BseNI	ACTGG	3 cut(s)	236, 388, 820
BsePI	GCGCGC	1 cut(s)	529
BseX3I	CGGCCG	1 cut(s)	391
BseXI	GCAGC	7 cut(s)	271, 471, 653, 739, 742, 761, 764
BsgI	GTGCAG	3 cut(s)	665, 699, 765
Bsh1236I	CGCG	1 cut(s)	531
Bsh1285I	CGRYCG	2 cut(s)	394, 414
BshFI	GGCC	6 cut(s)	22, 393, 792, 816, 830, 866
BshTI	ACCGGT	1 cut(s)	409
BsiEI	CGRYCG	2 cut(s)	394, 414
BsiHKAI	GWGCWC	3 cut(s)	48, 546, 612
BsiSI	CCGG	9 cut(s)	369, 390, 394, 410, 789, 813, 827, 839, 849
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	5 cut(s)	279, 368, 416, 826, 862
BsmAI	GTCTC	2 cut(s)	146, 690
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	6 cut(s)	22, 393, 792, 816, 830, 866
Bso31I	GGTCTC	1 cut(s)	690
Bsp1286I	GDGCHC	7 cut(s)	48, 363, 504, 546, 612, 634, 655
Bsp143I	GATC	3 cut(s)	49, 79, 491
BspACI	CCGC	7 cut(s)	191, 273, 328, 372, 375, 736, 759
BspANI	GGCC	6 cut(s)	22, 393, 792, 816, 830, 866
BspFNI	CGCG	1 cut(s)	531
BspLI	GGNNCC	4 cut(s)	271, 360, 379, 388
BspMAI	CTGCAG	2 cut(s)	729, 751
BspMI	ACCTGC	3 cut(s)	555, 621, 708
BspTNI	GGTCTC	1 cut(s)	690
BsrFI	RCCGGY	4 cut(s)	368, 389, 409, 812
BsrI	ACTGG	3 cut(s)	236, 388, 820
BssAI	RCCGGY	4 cut(s)	368, 389, 409, 812
BssECI	CCNNGG	1 cut(s)	354
BssHII	GCGCGC	1 cut(s)	529
BssMI	GATC	3 cut(s)	49, 79, 491
BssT1I	CCWWGG	1 cut(s)	354
Bst4CI	ACNGT	4 cut(s)	40, 439, 786, 876
BstF5I	GGATG	1 cut(s)	686
BstFNI	CGCG	1 cut(s)	531
BstH2I	RGCGCY	3 cut(s)	580, 646, 711
BstHHI	GCGC	6 cut(s)	447, 531, 533, 579, 645, 710
BstKTI	GATC	3 cut(s)	52, 82, 494
BstMAI	GTCTC	2 cut(s)	146, 690
BstMBI	GATC	3 cut(s)	49, 79, 491
BstMCI	CGRYCG	2 cut(s)	394, 414
BstMWI	GCNNNNNNNGC	7 cut(s)	281, 290, 327, 474, 634, 727, 758
BstSFI	CTRYAG	3 cut(s)	725, 747, 872
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	7 cut(s)	271, 471, 653, 739, 742, 761, 764
BstX2I	RGATCY	1 cut(s)	491
BstYI	RGATCY	1 cut(s)	491
BstZI	CGGCCG	1 cut(s)	391
BsuRI	GGCC	6 cut(s)	22, 393, 792, 816, 830, 866
BtsCI	GGATG	1 cut(s)	686
BtsIMutI	CAGTG	2 cut(s)	381, 435
BveI	ACCTGC	3 cut(s)	555, 621, 708
CaiI	CAGNNNCTG	2 cut(s)	679, 724
CfoI	GCGC	6 cut(s)	447, 531, 533, 579, 645, 710
Cfr10I	RCCGGY	4 cut(s)	368, 389, 409, 812
Cfr13I	GGNCC	2 cut(s)	233, 865
CseI	GACGC	2 cut(s)	545, 611
CspAI	ACCGGT	1 cut(s)	409
CviAII	CATG	1 cut(s)	64
DpnI	GATC	3 cut(s)	51, 81, 493
DpnII	GATC	3 cut(s)	49, 79, 491
EaeI	YGGCCR	3 cut(s)	391, 814, 828
EagI	CGGCCG	1 cut(s)	391
EciI	GGCGGA	1 cut(s)	390
Ecl136II	GAGCTC	1 cut(s)	46
EclXI	CGGCCG	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	5 cut(s)	48, 363, 504, 634, 655
Eco31I	GGTCTC	1 cut(s)	690
Eco47I	GGWCC	1 cut(s)	233
Eco52I	CGGCCG	1 cut(s)	391
Eco53kI	GAGCTC	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	186, 245
EcoICRI	GAGCTC	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	5 cut(s)	48, 363, 504, 634, 655
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	1 cut(s)	67
FaiI	YATR	4 cut(s)	10, 36, 65, 475
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	1 cut(s)	63
FauI	CCCGC	2 cut(s)	743, 766
FblI	GTMKAC	1 cut(s)	660
FokI	GGATG	1 cut(s)	673
FriOI	GRGCYC	5 cut(s)	48, 363, 504, 634, 655
FspBI	CTAG	2 cut(s)	159, 794
FspI	TGCGCA	1 cut(s)	446
GlaI	GCGC	6 cut(s)	446, 530, 532, 578, 644, 709
HaeII	RGCGCY	3 cut(s)	580, 646, 711
HaeIII	GGCC	6 cut(s)	22, 393, 792, 816, 830, 866
HapII	CCGG	9 cut(s)	369, 390, 394, 410, 789, 813, 827, 839, 849
HgaI	GACGC	2 cut(s)	545, 611
HhaI	GCGC	6 cut(s)	447, 531, 533, 579, 645, 710
Hin1II	CATG	1 cut(s)	67
Hin6I	GCGC	6 cut(s)	445, 529, 531, 577, 643, 708
HinP1I	GCGC	6 cut(s)	445, 529, 531, 577, 643, 708
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HinfI	GANTC	3 cut(s)	125, 154, 397
HpaII	CCGG	9 cut(s)	369, 390, 394, 410, 789, 813, 827, 839, 849
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	5 cut(s)	100, 211, 419, 427, 801
Hpy188III	TCNNGA	2 cut(s)	14, 231
Hpy8I	GTNNAC	1 cut(s)	661
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	2 cut(s)	173, 210
HpyCH4III	ACNGT	4 cut(s)	40, 439, 786, 876
HpyCH4V	TGCA	9 cut(s)	321, 513, 562, 595, 682, 716, 727, 749, 782
HpyF10VI	GCNNNNNNNGC	7 cut(s)	281, 290, 327, 474, 634, 727, 758
Hsp92II	CATG	1 cut(s)	67
HspAI	GCGC	6 cut(s)	445, 529, 531, 577, 643, 708
KroI	GCCGGC	1 cut(s)	812
KroNI	GCCGGC	1 cut(s)	814
Kzo9I	GATC	3 cut(s)	49, 79, 491
LmnI	GCTCC	4 cut(s)	43, 269, 358, 802
Lsp1109I	GCAGC	7 cut(s)	271, 471, 653, 739, 742, 761, 764
LweI	GCATC	7 cut(s)	224, 522, 542, 575, 598, 608, 695
MaeI	CTAG	2 cut(s)	159, 794
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	3 cut(s)	51, 81, 493
MboI	GATC	3 cut(s)	49, 79, 491
MflI	RGATCY	1 cut(s)	491
MhlI	GDGCHC	7 cut(s)	48, 363, 504, 546, 612, 634, 655
MluCI	AATT	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	148
MmeI	TCCRAC	2 cut(s)	397, 824
MnlI	CCTC	8 cut(s)	12, 130, 205, 319, 341, 776, 817, 856
MroNI	GCCGGC	1 cut(s)	812
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	452
MspA1I	CMGCKG	2 cut(s)	484, 666
MspI	CCGG	9 cut(s)	369, 390, 394, 410, 789, 813, 827, 839, 849
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	7 cut(s)	281, 290, 327, 474, 634, 727, 758
NaeI	GCCGGC	1 cut(s)	814
NdeII	GATC	3 cut(s)	49, 79, 491
NgoMIV	GCCGGC	1 cut(s)	812
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	4 cut(s)	271, 360, 379, 388
NmeAIII	GCCGAG	4 cut(s)	513, 565, 598, 729
NmuCI	GTSAC	1 cut(s)	433
NsbI	TGCGCA	1 cut(s)	446
OliI	CACNNNNGTG	1 cut(s)	452
PaqCI	CACCTGC	2 cut(s)	555, 621
PauI	GCGCGC	1 cut(s)	529
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
PdiI	GCCGGC	1 cut(s)	814
PfeI	GAWTC	2 cut(s)	125, 397
PinAI	ACCGGT	1 cut(s)	409
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp124BI	GAGCTC	1 cut(s)	48
PspN4I	GGNNCC	4 cut(s)	271, 360, 379, 388
PspPI	GGNCC	2 cut(s)	233, 865
PstI	CTGCAG	2 cut(s)	729, 751
PstNI	CAGNNNCTG	2 cut(s)	679, 724
PsuI	RGATCY	1 cut(s)	491
PteI	GCGCGC	1 cut(s)	529
PvuII	CAGCTG	2 cut(s)	484, 666
RseI	CAYNNNNRTG	1 cut(s)	452
SacI	GAGCTC	1 cut(s)	48
SalI	GTCGAC	1 cut(s)	659
SaqAI	TTAA	1 cut(s)	240
Sau3AI	GATC	3 cut(s)	49, 79, 491
Sau96I	GGNCC	2 cut(s)	233, 865
SchI	GAGTC	1 cut(s)	148
SduI	GDGCHC	7 cut(s)	48, 363, 504, 546, 612, 634, 655
SfaNI	GCATC	7 cut(s)	224, 522, 542, 575, 598, 608, 695
SfcI	CTRYAG	3 cut(s)	725, 747, 872
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	1 cut(s)	5
SsiI	CCGC	7 cut(s)	191, 273, 328, 372, 375, 736, 759
SspMI	CTAG	2 cut(s)	159, 794
SstI	GAGCTC	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	4 cut(s)	40, 439, 786, 876
TaqI	TCGA	6 cut(s)	48, 340, 400, 498, 606, 660
TasI	AATT	1 cut(s)	5
TauI	GCSGC	3 cut(s)	193, 275, 375
TfiI	GAWTC	2 cut(s)	125, 397
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	388, 442
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	7 cut(s)	284, 484, 666, 727, 730, 749, 752
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	2 cut(s)	17, 42
TspRI	CASTG	2 cut(s)	388, 442
VpaK11BI	GGWCC	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	660
XspI	CTAG	2 cut(s)	159, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.