Rh3BG367100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002487
Physical Location & Seq
Forward (+)
45607305 .. 45613009
5705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG367100.1

Sequence Viewer

Length: 1122 bp
ATGGATTCCGAAACAGAAGCTCTTGAGGAGAAGTTGATGTCTTTGCTTGGTCAACTCCGAGCTGAGTGTGCCATTCTTGAAAGAGTGGTTTACAAGAACAAGAATCAGCATAGACGTTCCTCTTACTTCCAGTACCTAATGAAGGTAAGGAGGGATTTGAGGCTTTTACAATCAACTAAGTTGGAGGAGATTTTGGGTTGCTGTTTCCAAAGTATCACTGGAAAGAGACCCAAGCAAAAGATGCATCTATTAGAAAGTTTGAAGAGAAGAAAATGTGAAAGTGGAAAATATAATTTCATGGAACGACTTCTGGGAGCTGCACGTCTTCTATCACAGATGGTTGAACCAATGTTGAAGGCTGCTATTCAGATATCTACATTGCTGGCTCGATCTTTTTTTATGGGATTCTCTTTGATTATCTTAGCTTTGCTTGCACGACTTCGAGTTTTGGTTCAACAGATTCTGCTTGATGTTGTTTCAGTATTCAACATGGTTTCTTCTCTCTCCCAAAAGAAGCAATCAGTTAAAATAAATCAAGGAGTTGAGGTCTTCAGGGAGTTTTACCCTACACAAGAGGATTTTATCACTTTGGAGTGTGTGTGGAAATCTGATAAATTTGACTTGCTTGAGAGGACACATAAGAGCCAGATTGCAAGTCCTGGTGTGGATCTTTCTTTACGGACATCATCTGTGCTTTATCGAAGTATCGAGTCTTCCCTTGGAGATGACGAAATCATGTCTGAGATGCCAGATGAAAACCATACTGTTGAGCTTGATCAAGTTCAGGTCATGGAGAACAACATTGATCTATTATCTGGTCCATCCGATGGTGATGATGTAAAGCTAGTTGAACCTTATGGGGAGGGTTCAAACATGGAAGACACTCCTAGCAAAGAGCTTTCCCAAGAAGGTTGCTTGCCACAAGTCTCTTCAAGTTCAGAGGCATCAAAACTGAAGTCTGGACCGGTTAAAGTGGCATTCATACAAATTAAAAAACCCATAACATCATCTGCAAATACATCTGGAATCCATTCTAGAGTTACTGACATCATTAGCCATAATAAGGAAGATCCATTGTTCAGCTTGCTTTCTAGTGGCAATGTAAAGAATAGTCTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4477

Protein Analysis

373

Amino Acids

42.05

Weight (kDa)

6.63

Isoelectric Point (pI)

58.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NEPRO_N PF14780 4 - 163 1.9e-15 Nucleolus and neural progenitor protein, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 827
AclWI GGATC 2 cut(s) 675, 1064
AcsI RAATTY 1 cut(s) 614
AcuI CTGAAG 2 cut(s) 535, 974
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 3 cut(s) 142, 827, 1063
AgeI ACCGGT 1 cut(s) 964
AgsI TTSAA 9 cut(s) 80, 262, 344, 355, 455, 487, 851, 870, 933
AjiI CACGTC 1 cut(s) 323
AjnI CCWGG 1 cut(s) 658
AluBI AGCT 8 cut(s) 20, 62, 317, 425, 772, 844, 898, 1083
AluI AGCT 8 cut(s) 20, 62, 317, 425, 772, 844, 898, 1083
Alw26I GTCTC 3 cut(s) 220, 931, 1118
AlwI GGATC 2 cut(s) 675, 1064
AlwNI CAGNNNCTG 1 cut(s) 463
ApeKI GCWGC 2 cut(s) 317, 359
ApoI RAATTY 1 cut(s) 614
ArsI GACNNNNNNTTYG 2 cut(s) 941, 973
AsiGI ACCGGT 1 cut(s) 964
Asp700I GAANNNNTTC 2 cut(s) 306, 1030
AspS9I GGNCC 2 cut(s) 818, 962
AsuHPI GGTGA 1 cut(s) 842
AvaII GGWCC 2 cut(s) 818, 962
BarI GAAGNNNNNNTAC 2 cut(s) 697, 729
BbsI GAAGAC 4 cut(s) 317, 541, 705, 885
BbvI GCAGC 2 cut(s) 304, 346
BccI CCATC 3 cut(s) 331, 821, 829
BciT130I CCWGG 1 cut(s) 660
BclI TGATCA 1 cut(s) 775
BcoDI GTCTC 3 cut(s) 220, 931, 1118
BfaI CTAG 4 cut(s) 845, 888, 1035, 1092
BisI GCNGC 2 cut(s) 318, 360
BlsI GCNGC 2 cut(s) 319, 361
Bme1390I CCNGG 1 cut(s) 660
Bme18I GGWCC 2 cut(s) 818, 962
BmgBI CACGTC 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 818, 962
BmrFI CCNGG 1 cut(s) 660
BmsI GCATC 4 cut(s) 231, 253, 735, 953
BpiI GAAGAC 4 cut(s) 317, 541, 705, 885
BpuEI CTTGAG 2 cut(s) 44, 647
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 718
BsaWI WCCGGW 1 cut(s) 964
BsaXI ACNNNNNCTCC 4 cut(s) 531, 561, 584, 614
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 827, 1063
Bse118I RCCGGY 1 cut(s) 964
Bse1I ACTGG 2 cut(s) 130, 223
Bse3DI GCAATG 2 cut(s) 377, 1105
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 1 cut(s) 718
BseGI GGATG 1 cut(s) 821
BseLI CCNNNNNNNGG 3 cut(s) 142, 827, 1063
BseMI GCAATG 2 cut(s) 377, 1105
BseMII CTCAG 2 cut(s) 54, 732
BseNI ACTGG 2 cut(s) 130, 223
BseRI GAGGAG 2 cut(s) 41, 200
BseXI GCAGC 2 cut(s) 304, 346
BsgI GTGCAG 1 cut(s) 303
BshTI ACCGGT 1 cut(s) 964
BsiSI CCGG 1 cut(s) 965
BslI CCNNNNNNNGG 3 cut(s) 142, 827, 1063
BsmAI GTCTC 3 cut(s) 220, 931, 1118
BsmI GAATGC 1 cut(s) 977
Bso31I GGTCTC 1 cut(s) 220
Bsp143I GATC 5 cut(s) 389, 667, 775, 805, 1069
BspCNI CTCAG 2 cut(s) 55, 733
BspPI GGATC 2 cut(s) 675, 1064
BspTNI GGTCTC 1 cut(s) 220
BsrDI GCAATG 2 cut(s) 377, 1105
BsrFI RCCGGY 1 cut(s) 964
BsrI ACTGG 2 cut(s) 130, 223
BssAI RCCGGY 1 cut(s) 964
BssECI CCNNGG 1 cut(s) 718
BssMI GATC 5 cut(s) 389, 667, 775, 805, 1069
BssT1I CCWWGG 1 cut(s) 718
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 1 cut(s) 766
Bst6I CTCTTC 2 cut(s) 257, 934
BstAPI GCANNNNNTGC 1 cut(s) 241
BstC8I GCNNGC 4 cut(s) 384, 432, 917, 1085
BstDEI CTNAG 4 cut(s) 63, 177, 421, 741
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 821
BstKTI GATC 5 cut(s) 392, 670, 778, 808, 1072
BstMAI GTCTC 3 cut(s) 220, 931, 1118
BstMBI GATC 5 cut(s) 389, 667, 775, 805, 1069
BstMWI GCNNNNNNNGC 3 cut(s) 68, 241, 431
BstNI CCWGG 1 cut(s) 660
BstSCI CCNGG 1 cut(s) 658
BstV1I GCAGC 2 cut(s) 304, 346
BstV2I GAAGAC 4 cut(s) 317, 541, 705, 885
BstX2I RGATCY 2 cut(s) 667, 1069
BstYI RGATCY 2 cut(s) 667, 1069
BtrI CACGTC 1 cut(s) 323
BtsCI GGATG 1 cut(s) 821
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 4 cut(s) 384, 432, 917, 1085
CaiI CAGNNNCTG 1 cut(s) 463
Cfr10I RCCGGY 1 cut(s) 964
Cfr13I GGNCC 2 cut(s) 818, 962
Csp6I GTAC 1 cut(s) 133
CspAI ACCGGT 1 cut(s) 964
CviAII CATG 5 cut(s) 298, 490, 736, 790, 874
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 4 cut(s) 63, 177, 421, 741
DpnI GATC 5 cut(s) 391, 669, 777, 807, 1071
DpnII GATC 5 cut(s) 389, 667, 775, 805, 1069
Eam1104I CTCTTC 2 cut(s) 257, 934
EarI CTCTTC 2 cut(s) 257, 934
Eco130I CCWWGG 1 cut(s) 718
Eco31I GGTCTC 1 cut(s) 220
Eco32I GATATC 1 cut(s) 372
Eco47I GGWCC 2 cut(s) 818, 962
Eco57I CTGAAG 2 cut(s) 535, 974
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 658
EcoRV GATATC 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 718
EcoT22I ATGCAT 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 718
FaeI CATG 5 cut(s) 301, 493, 739, 793, 877
FatI CATG 5 cut(s) 297, 489, 735, 789, 873
FbaI TGATCA 1 cut(s) 775
Fnu4HI GCNGC 2 cut(s) 318, 360
FokI GGATG 1 cut(s) 808
Fsp4HI GCNGC 2 cut(s) 318, 360
FspBI CTAG 4 cut(s) 845, 888, 1035, 1092
GluI GCNGC 2 cut(s) 318, 360
HapII CCGG 1 cut(s) 965
Hin1II CATG 5 cut(s) 301, 493, 739, 793, 877
HincII GTYRAC 1 cut(s) 53
HindII GTYRAC 1 cut(s) 53
HinfI GANTC 6 cut(s) 5, 103, 405, 460, 710, 1026
HpaII CCGG 1 cut(s) 965
HphI GGTGA 1 cut(s) 842
Hpy166II GTNNAC 2 cut(s) 53, 91
Hpy188I TCNGA 8 cut(s) 10, 59, 369, 610, 742, 826, 940, 1121
Hpy188III TCNNGA 5 cut(s) 23, 77, 960, 1023, 1035
Hpy8I GTNNAC 2 cut(s) 53, 91
HpyAV CCTTC 3 cut(s) 136, 349, 902
HpyCH4III ACNGT 1 cut(s) 766
HpyCH4IV ACGT 2 cut(s) 115, 322
HpyCH4V TGCA 5 cut(s) 244, 320, 434, 653, 1013
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 241, 431
HpyF3I CTNAG 4 cut(s) 63, 177, 421, 741
HpySE526I ACGT 2 cut(s) 115, 322
Hsp92II CATG 5 cut(s) 301, 493, 739, 793, 877
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 5 cut(s) 389, 667, 775, 805, 1069
LmnI GCTCC 1 cut(s) 314
Lsp1109I GCAGC 2 cut(s) 304, 346
LweI GCATC 4 cut(s) 231, 253, 735, 953
MaeI CTAG 4 cut(s) 845, 888, 1035, 1092
MaeII ACGT 2 cut(s) 115, 322
MaeIII GTNAC 1 cut(s) 1039
MalI GATC 5 cut(s) 391, 669, 777, 807, 1071
MboI GATC 5 cut(s) 389, 667, 775, 805, 1069
MflI RGATCY 2 cut(s) 667, 1069
MluCI AATT 3 cut(s) 292, 614, 987
MlyI GAGTC 1 cut(s) 719
MmeI TCCRAC 1 cut(s) 162
Mph1103I ATGCAT 1 cut(s) 246
MroXI GAANNNNTTC 2 cut(s) 306, 1030
MseI TTAA 3 cut(s) 525, 969, 990
MspI CCGG 1 cut(s) 965
MspR9I CCNGG 1 cut(s) 660
Mva1269I GAATGC 1 cut(s) 977
MvaI CCWGG 1 cut(s) 660
MwoI GCNNNNNNNGC 3 cut(s) 68, 241, 431
NdeII GATC 5 cut(s) 389, 667, 775, 805, 1069
NlaIII CATG 5 cut(s) 301, 493, 739, 793, 877
NsiI ATGCAT 1 cut(s) 246
PctI GAATGC 1 cut(s) 977
PdmI GAANNNNTTC 2 cut(s) 306, 1030
PfeI GAWTC 5 cut(s) 5, 103, 405, 460, 1026
PflMI CCANNNNNTGG 1 cut(s) 827
PinAI ACCGGT 1 cut(s) 964
PkrI GCNGC 2 cut(s) 319, 361
PleI GAGTC 1 cut(s) 718
PpsI GAGTC 1 cut(s) 718
Psp6I CCWGG 1 cut(s) 658
PspGI CCWGG 1 cut(s) 658
PspPI GGNCC 2 cut(s) 818, 962
PstNI CAGNNNCTG 1 cut(s) 463
PsuI RGATCY 2 cut(s) 667, 1069
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SaqAI TTAA 3 cut(s) 525, 969, 990
SatI GCNGC 2 cut(s) 318, 360
Sau3AI GATC 5 cut(s) 389, 667, 775, 805, 1069
Sau96I GGNCC 2 cut(s) 818, 962
SchI GAGTC 1 cut(s) 719
ScrFI CCNGG 1 cut(s) 660
SfaNI GCATC 4 cut(s) 231, 253, 735, 953
SinI GGWCC 2 cut(s) 818, 962
SmlI CTYRAG 2 cut(s) 23, 626
SmoI CTYRAG 2 cut(s) 23, 626
Sse9I AATT 3 cut(s) 292, 614, 987
SspMI CTAG 4 cut(s) 845, 888, 1035, 1092
StyD4I CCNGG 1 cut(s) 658
StyI CCWWGG 1 cut(s) 718
TaaI ACNGT 1 cut(s) 766
TaiI ACGT 2 cut(s) 118, 325
TaqI TCGA 4 cut(s) 388, 442, 700, 708
TasI AATT 3 cut(s) 292, 614, 987
TfiI GAWTC 5 cut(s) 5, 103, 405, 460, 1026
Tru1I TTAA 3 cut(s) 525, 969, 990
Tru9I TTAA 3 cut(s) 525, 969, 990
TscAI CASTG 1 cut(s) 223
TseI GCWGC 2 cut(s) 317, 359
TspDTI ATGAA 4 cut(s) 155, 286, 768, 970
TspGWI ACGGA 1 cut(s) 694
TspRI CASTG 1 cut(s) 223
Van91I CCANNNNNTGG 1 cut(s) 827
VpaK11BI GGWCC 2 cut(s) 818, 962
XagI CCTNNNNNAGG 1 cut(s) 140
XapI RAATTY 1 cut(s) 614
XbaI TCTAGA 1 cut(s) 1034
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
XmnI GAANNNNTTC 2 cut(s) 306, 1030
XspI CTAG 4 cut(s) 845, 888, 1035, 1092
Zsp2I ATGCAT 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.