Rh6BG121000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
18806644 .. 18807238
595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG121000.1

Sequence Viewer

Length: 336 bp
ATGACAGGGATGAGTATTATGCATGGGGCCTGCACCAAATTGCTAAATGTAAGAATGGATTTGAGGCTTTTACAATCAACCAAGTTGGAGGAGATTTTGGGCTGCAGTTTCCAAAGTATCACTGGAAAGAGACCCAAGCAAAATGTGCATCCATTAGAAAGTTTGAAGAGAAGAAAATGTGAAAGTGGAAAATATAATTTCATGGAACGACTTCTGGGAACTGCATGTCTTCTATCACAGATGTTTCTTGCTTTATCATATGAATTCAGTTTTATCCTCTTTAATTGCACTTGTTGTATGGTTAACATTGTATTATTGACTATCATATTCACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.66

Weight (kDa)

9.12

Isoelectric Point (pI)

70.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 263
AgsI TTSAA 1 cut(s) 166
Alw26I GTCTC 1 cut(s) 124
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 102
ApoI RAATTY 1 cut(s) 263
Asp700I GAANNNNTTC 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 124
BfmI CTRYAG 1 cut(s) 103
BisI GCNGC 1 cut(s) 103
BlsI GCNGC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 28
BmsI GCATC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 221
BsaAI YACGTR 1 cut(s) 333
BsaI GGTCTC 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 127
BseGI GGATG 2 cut(s) 15, 148
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 89
BsgI GTGCAG 1 cut(s) 16
BshFI GGCC 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 124
BsnI GGCC 1 cut(s) 29
Bso31I GGTCTC 1 cut(s) 124
BspANI GGCC 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 124
BsrI ACTGG 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 161
BstAPI GCANNNNNTGC 1 cut(s) 145
BstBAI YACGTR 1 cut(s) 333
BstC8I GCNNGC 1 cut(s) 31
BstF5I GGATG 2 cut(s) 15, 148
BstMAI GTCTC 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 145
BstNSI RCATGY 1 cut(s) 228
BstSFI CTRYAG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 221
BsuRI GGCC 1 cut(s) 29
BtsCI GGATG 2 cut(s) 15, 148
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 27
CviAII CATG 3 cut(s) 23, 202, 225
CviJI RGCY 3 cut(s) 29, 67, 102
CviKI_1 RGCY 3 cut(s) 29, 67, 102
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco31I GGTCTC 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 27
EcoRI GAATTC 1 cut(s) 263
EcoT22I ATGCAT 1 cut(s) 24
FaeI CATG 3 cut(s) 26, 205, 228
FaiI YATR 9 cut(s) 20, 24, 195, 203, 226, 259, 261, 299, 326
FatI CATG 3 cut(s) 22, 201, 224
FauNDI CATATG 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 103
FokI GGATG 2 cut(s) 22, 135
Fsp4HI GCNGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 103
HaeIII GGCC 1 cut(s) 29
Hin1II CATG 3 cut(s) 26, 205, 228
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HpaI GTTAAC 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 304
Hpy8I GTNNAC 1 cut(s) 304
HpyCH4IV ACGT 1 cut(s) 332
HpyCH4V TGCA 6 cut(s) 22, 33, 105, 148, 224, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 145
HpySE526I ACGT 1 cut(s) 332
Hsp92II CATG 3 cut(s) 26, 205, 228
KspAI GTTAAC 1 cut(s) 304
LpnPI CCDG 3 cut(s) 43, 108, 200
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 1 cut(s) 157
MaeII ACGT 1 cut(s) 332
MboII GAAGA 3 cut(s) 178, 183, 221
MluCI AATT 4 cut(s) 38, 196, 263, 283
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 3 cut(s) 57, 82, 287
Mph1103I ATGCAT 1 cut(s) 24
MroXI GAANNNNTTC 1 cut(s) 210
MseI TTAA 2 cut(s) 282, 303
MwoI GCNNNNNNNGC 1 cut(s) 145
NdeI CATATG 1 cut(s) 259
NlaIII CATG 3 cut(s) 26, 205, 228
NlaIV GGNNCC 1 cut(s) 28
NsiI ATGCAT 1 cut(s) 24
NspI RCATGY 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 210
PkrI GCNGC 1 cut(s) 104
Ppu21I YACGTR 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 27
PstI CTGCAG 1 cut(s) 107
SaqAI TTAA 2 cut(s) 282, 303
SatI GCNGC 1 cut(s) 103
Sau96I GGNCC 1 cut(s) 27
SetI ASST 1 cut(s) 335
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 103
Sse9I AATT 4 cut(s) 38, 196, 263, 283
TaiI ACGT 1 cut(s) 335
TasI AATT 4 cut(s) 38, 196, 263, 283
Tru1I TTAA 2 cut(s) 282, 303
Tru9I TTAA 2 cut(s) 282, 303
TscAI CASTG 1 cut(s) 127
TseI GCWGC 1 cut(s) 102
TspDTI ATGAA 2 cut(s) 190, 276
TspRI CASTG 1 cut(s) 127
XapI RAATTY 1 cut(s) 263
XceI RCATGY 1 cut(s) 228
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 210
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.