Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002899.1

Orthogroup ID

OG0002487

Physical Location & Seq

Genomic Coordinates Reverse (-)

21109 .. 31687

Gene Structure 10579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002899.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

atgaatcaagaccaagcgaagataacctcactctgtgtcgctaatggccgagttcggaaacagaaccagagagctgtggagaagaagaagaagaagaagaagaaggggagcttctctttcttccgtctgcaaaaaccttcgtttgagctatctggaaaacttgctgcggaaaccaatagattcagggggttcctgatggattctgaagcagaagctcttgaggagaagctgacgtctttgtttggtcagctccgagctgagtgtgctattcttgaaagagtggtctacaagaacaagaaccagcatagacgttcctcgtacttccagtacctaatgaaggtaaggagggatttgaggcttttacaatcaactaagttggaggagattttgggctgctgtttccaaagtatcactggaaagagacccaagcaaaaggtgcatctattagaaagtttgaagagaagaaaatgtgaaagtggaaaatataatttcatggaacgacttctgggagctgcacgtcttttatcacagatggttgaaccaatgttgaaggctgctattcagatatctgcattactggctcgatcttttttcatgggattctctttgactatcttagctttgcttgcacgacttcgagttttggttcaacagattctgcttgatgttgtttcagtattcaacatggtttcttctctctcccaaaagaagcaatcagttcaaataaatcaagaaggagttgaggtcttcagggagttttaccctacacaagaggattttatcactctggagtgcgtgtggaaatctgataaatttgacttggttgagaggacacaaaagagccagattgcagtgtcagggcacacttctgcggcgggtagtatcccagtcacctggacacctcccctccctccttgggttaagattaacactgacagatcattccgagatacggataatgcgggcttcagtggtattgcccgtggaccagaggactcggctgtggtggtaaggtatttcacagccccaagtcttgtcccttggaggctgcgcattgaatggtcaaatgggatggctttagcgagacaattgcagctacgtgtcactcatatcttttgggaagggaatgccgtggtagacgcgttggataactttggtgcatcacatgaaggtacgcttagatgggattcagtgcctcgtttcttgtcttctgcttttggctgtgatcaagcgtcatggccaatctacaggtctgcctactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4477

Protein Analysis

420

Amino Acids

47.95

Weight (kDa)

9.89

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50910 AT1G50910
fragaria_vesca	FvH4_3g22120 FvH4_3g22120
malus_domestica	MD03G1208200.v1.1 MD11G1222400.v1.1
prunus_persica	Prupe.4G208500_v2.0.a1
pyrus_communis	pycom11g19620
rosa_chinensis	RchiOBHm_Chr1g0330851 RchiOBHm_Chr5g0037971
rosa_laevigata	RLG00000022534 RLG00000029769 RLG00000029772 RLG00000029783 RLG00000033828
rosa_multiflora	Rmu_sc0002621.1_g000008 Rmu_sc0002621.1_g000015 Rmu_sc0002670.1_g000013 Rmu_sc0002899.1_g000005 Rmu_sc0010964.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319700
rosa_rugosa	Rorug01G0090700 Rorug05G0169800
rosa_samantha	Rh1AG112300 Rh1BG086400 Rh1BG114800 Rh1CG107700 Rh1CG109400 Rh1DG117800 Rh3BG367100 Rh3BG367300 Rh5AG258000 Rh5BG261000 Rh5CG293300 Rh5DG270200 Rh6BG121000 Rh6BG268100 Rh6CG119300
rosa_wichuraiana	Rw1G009090 Rw5G023910 Rw5G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	236
Acc16I	TGCGCA	1 cut(s)	1052
AccI	GTMKAC	2 cut(s)	285, 1137
AccII	CGCG	1 cut(s)	1142
AciI	CCGC	4 cut(s)	167, 872, 875, 962
AcoI	YGGCCR	2 cut(s)	46, 1238
AcsI	RAATTY	1 cut(s)	812
AcuI	CTGAAG	3 cut(s)	225, 733, 952
AcyI	GRCGYC	1 cut(s)	233
AdeI	CACNNNGTG	1 cut(s)	35
AfaI	GTAC	3 cut(s)	320, 329, 1174
AfiI	CCNNNNNNNGG	3 cut(s)	337, 916, 952
AflIII	ACRYGT	2 cut(s)	1099, 1140
AgsI	TTSAA	8 cut(s)	275, 457, 539, 550, 650, 682, 722, 1058
AjiI	CACGTC	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	893
Alw26I	GTCTC	2 cut(s)	415, 1078
AlwNI	CAGNNNCTG	1 cut(s)	658
AoxI	GGCC	2 cut(s)	46, 1238
ApeKI	GCWGC	6 cut(s)	164, 393, 512, 554, 1048, 1093
ApoI	RAATTY	1 cut(s)	812
Asp700I	GAANNNNTTC	1 cut(s)	501
AspLEI	GCGC	1 cut(s)	1053
AspS9I	GGNCC	1 cut(s)	986
AsuHPI	GGTGA	1 cut(s)	883
AvaII	GGWCC	1 cut(s)	986
BaeGI	GKGCMC	1 cut(s)	864
BalI	TGGCCA	1 cut(s)	1240
BbsI	GAAGAC	2 cut(s)	739, 1200
BbvI	GCAGC	6 cut(s)	151, 380, 499, 541, 1035, 1105
BccI	CCATC	4 cut(s)	190, 526, 1066, 1176
BceAI	ACGGC	1 cut(s)	1115
BcgI	CGANNNNNNTGC	2 cut(s)	1072, 1106
BciT130I	CCWGG	1 cut(s)	895
BciVI	GTATCC	1 cut(s)	893
BclI	TGATCA	1 cut(s)	1225
BcoDI	GTCTC	2 cut(s)	415, 1078
BfmI	CTRYAG	1 cut(s)	1246
BfuI	GTATCC	1 cut(s)	893
BisI	GCNGC	7 cut(s)	165, 394, 513, 555, 873, 1049, 1094
BlsI	GCNGC	7 cut(s)	166, 395, 514, 556, 874, 1050, 1095
Bme1390I	CCNGG	1 cut(s)	895
Bme18I	GGWCC	1 cut(s)	986
BmgBI	CACGTC	1 cut(s)	518
BmgT120I	GGNCC	1 cut(s)	986
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	895
BmrI	ACTGGG	1 cut(s)	881
BmsI	GCATC	2 cut(s)	448, 1169
BmuI	ACTGGG	1 cut(s)	881
BpiI	GAAGAC	2 cut(s)	739, 1200
BpmI	CTGGAG	1 cut(s)	809
BpuEI	CTTGAG	1 cut(s)	239
BsaAI	YACGTR	1 cut(s)	1100
BsaHI	GRCGYC	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	415
BsaJI	CCNNGG	4 cut(s)	914, 982, 1040, 1131
BsaXI	ACNNNNNCTCC	6 cut(s)	729, 759, 782, 812, 891, 921
Bsc4I	CCNNNNNNNGG	3 cut(s)	337, 916, 952
Bse1I	ACTGG	4 cut(s)	325, 418, 582, 887
BseBI	CCWGG	1 cut(s)	895
BseDI	CCNNGG	4 cut(s)	914, 982, 1040, 1131
BseGI	GGATG	1 cut(s)	1077
BseLI	CCNNNNNNNGG	3 cut(s)	337, 916, 952
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	4 cut(s)	325, 418, 582, 887
BseRI	GAGGAG	2 cut(s)	236, 395
BseSI	GKGCMC	1 cut(s)	864
BseXI	GCAGC	6 cut(s)	151, 380, 499, 541, 1035, 1105
BsgI	GTGCAG	1 cut(s)	498
Bsh1236I	CGCG	1 cut(s)	1142
BshFI	GGCC	2 cut(s)	48, 1240
BslFI	GGGAC	1 cut(s)	1022
BslI	CCNNNNNNNGG	3 cut(s)	337, 916, 952
BsmAI	GTCTC	2 cut(s)	415, 1078
BsmFI	GGGAC	1 cut(s)	1022
BsmI	GAATGC	1 cut(s)	1132
BsnI	GGCC	2 cut(s)	48, 1240
Bso31I	GGTCTC	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	864
Bsp143I	GATC	3 cut(s)	584, 938, 1225
BspACI	CCGC	4 cut(s)	167, 872, 875, 962
BspANI	GGCC	2 cut(s)	48, 1240
BspCNI	CTCAG	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	1142
BspLI	GGNNCC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	415
BsrI	ACTGG	4 cut(s)	325, 418, 582, 887
BssECI	CCNNGG	4 cut(s)	914, 982, 1040, 1131
BssMI	GATC	3 cut(s)	584, 938, 1225
BssNI	GRCGYC	1 cut(s)	233
BssT1I	CCWWGG	2 cut(s)	914, 1040
Bst2UI	CCWGG	1 cut(s)	895
Bst6I	CTCTTC	1 cut(s)	452
BstACI	GRCGYC	1 cut(s)	233
BstAPI	GCANNNNNTGC	1 cut(s)	436
BstBAI	YACGTR	1 cut(s)	1100
BstC8I	GCNNGC	2 cut(s)	627, 964
BstDEI	CTNAG	4 cut(s)	258, 372, 616, 1178
BstDSI	CCRYGG	2 cut(s)	982, 1131
BstENI	CCTNNNNNAGG	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	1077
BstFNI	CGCG	1 cut(s)	1142
BstHHI	GCGC	1 cut(s)	1053
BstKTI	GATC	3 cut(s)	587, 941, 1228
BstMAI	GTCTC	2 cut(s)	415, 1078
BstMBI	GATC	3 cut(s)	584, 938, 1225
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 436, 578, 626
BstNI	CCWGG	1 cut(s)	895
BstSCI	CCNGG	1 cut(s)	893
BstSFI	CTRYAG	1 cut(s)	1246
BstSLI	GKGCMC	1 cut(s)	864
BstUI	CGCG	1 cut(s)	1142
BstV1I	GCAGC	6 cut(s)	151, 380, 499, 541, 1035, 1105
BstV2I	GAAGAC	2 cut(s)	739, 1200
BstXI	CCANNNNNNTGG	1 cut(s)	894
BsuI	GTATCC	1 cut(s)	893
BsuRI	GGCC	2 cut(s)	48, 1240
BtgI	CCRYGG	2 cut(s)	982, 1131
BtrI	CACGTC	1 cut(s)	518
BtsCI	GGATG	1 cut(s)	1077
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	5 cut(s)	411, 858, 930, 976, 1197
Cac8I	GCNNGC	2 cut(s)	627, 964
CaiI	CAGNNNCTG	1 cut(s)	658
CfoI	GCGC	1 cut(s)	1053
Cfr13I	GGNCC	1 cut(s)	986
CseI	GACGC	2 cut(s)	1148, 1221
Csp6I	GTAC	3 cut(s)	319, 328, 1173
CviAII	CATG	5 cut(s)	493, 595, 685, 1166, 1236
CviQI	GTAC	3 cut(s)	319, 328, 1173
DdeI	CTNAG	4 cut(s)	258, 372, 616, 1178
DpnI	GATC	3 cut(s)	586, 940, 1227
DpnII	GATC	3 cut(s)	584, 938, 1225
DraIII	CACNNNGTG	1 cut(s)	35
EaeI	YGGCCR	2 cut(s)	46, 1238
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Eco130I	CCWWGG	2 cut(s)	914, 1040
Eco31I	GGTCTC	1 cut(s)	415
Eco32I	GATATC	1 cut(s)	567
Eco47I	GGWCC	1 cut(s)	986
Eco57I	CTGAAG	3 cut(s)	225, 733, 952
EcoNI	CCTNNNNNAGG	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	893
EcoRV	GATATC	1 cut(s)	567
EcoT14I	CCWWGG	2 cut(s)	914, 1040
ErhI	CCWWGG	2 cut(s)	914, 1040
FaeI	CATG	5 cut(s)	496, 598, 688, 1169, 1239
FaiI	YATR	8 cut(s)	306, 486, 494, 596, 686, 1110, 1167, 1237
FalI	AAGNNNNNCTT	4 cut(s)	95, 127, 1161, 1193
FaqI	GGGAC	1 cut(s)	1022
FatI	CATG	5 cut(s)	492, 594, 684, 1165, 1235
FauI	CCCGC	2 cut(s)	868, 955
FbaI	TGATCA	1 cut(s)	1225
FblI	GTMKAC	2 cut(s)	285, 1137
Fnu4HI	GCNGC	7 cut(s)	165, 394, 513, 555, 873, 1049, 1094
FokI	GGATG	1 cut(s)	1084
Fsp4HI	GCNGC	7 cut(s)	165, 394, 513, 555, 873, 1049, 1094
FspI	TGCGCA	1 cut(s)	1052
GlaI	GCGC	1 cut(s)	1052
GluI	GCNGC	7 cut(s)	165, 394, 513, 555, 873, 1049, 1094
GsuI	CTGGAG	1 cut(s)	809
HaeIII	GGCC	2 cut(s)	48, 1240
HgaI	GACGC	2 cut(s)	1148, 1221
HhaI	GCGC	1 cut(s)	1053
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	5 cut(s)	496, 598, 688, 1169, 1239
Hin6I	GCGC	1 cut(s)	1051
HinP1I	GCGC	1 cut(s)	1051
HinfI	GANTC	7 cut(s)	4, 180, 200, 600, 655, 995, 1187
HphI	GGTGA	1 cut(s)	883
Hpy166II	GTNNAC	3 cut(s)	286, 986, 1138
Hpy188I	TCNGA	6 cut(s)	57, 205, 254, 564, 808, 947
Hpy188III	TCNNGA	7 cut(s)	8, 153, 193, 218, 272, 731, 788
Hpy8I	GTNNAC	3 cut(s)	286, 986, 1138
HpyAV	CCTTC	7 cut(s)	97, 147, 331, 544, 728, 1115, 1163
HpyCH4IV	ACGT	4 cut(s)	233, 310, 517, 1099
HpyCH4V	TGCA	8 cut(s)	130, 439, 515, 572, 629, 851, 1093, 1160
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 436, 578, 626
HpyF3I	CTNAG	4 cut(s)	258, 372, 616, 1178
HpySE526I	ACGT	4 cut(s)	233, 310, 517, 1099
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	5 cut(s)	496, 598, 688, 1169, 1239
HspAI	GCGC	1 cut(s)	1051
Ksp22I	TGATCA	1 cut(s)	1225
Kzo9I	GATC	3 cut(s)	584, 938, 1225
LmnI	GCTCC	3 cut(s)	108, 255, 509
Lsp1109I	GCAGC	6 cut(s)	151, 380, 499, 541, 1035, 1105
LweI	GCATC	2 cut(s)	448, 1169
MaeII	ACGT	4 cut(s)	233, 310, 517, 1099
MaeIII	GTNAC	2 cut(s)	889, 1102
MalI	GATC	3 cut(s)	586, 940, 1227
MboI	GATC	3 cut(s)	584, 938, 1225
MfeI	CAATTG	1 cut(s)	1088
MhlI	GDGCHC	1 cut(s)	864
MlsI	TGGCCA	1 cut(s)	1240
MluCI	AATT	3 cut(s)	487, 812, 1088
MluI	ACGCGT	1 cut(s)	1140
MluNI	TGGCCA	1 cut(s)	1240
MlyI	GAGTC	1 cut(s)	989
MmeI	TCCRAC	2 cut(s)	357, 1125
Mox20I	TGGCCA	1 cut(s)	1240
MroXI	GAANNNNTTC	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	1240
MseI	TTAA	2 cut(s)	921, 927
Msp20I	TGGCCA	1 cut(s)	1240
MspR9I	CCNGG	1 cut(s)	895
MunI	CAATTG	1 cut(s)	1088
Mva1269I	GAATGC	1 cut(s)	1132
MvaI	CCWGG	1 cut(s)	895
MvnI	CGCG	1 cut(s)	1142
MwoI	GCNNNNNNNGC	4 cut(s)	263, 436, 578, 626
NdeII	GATC	3 cut(s)	584, 938, 1225
NlaIII	CATG	5 cut(s)	496, 598, 688, 1169, 1239
NlaIV	GGNNCC	1 cut(s)	191
NmeAIII	GCCGAG	2 cut(s)	74, 977
NmuCI	GTSAC	2 cut(s)	889, 1102
NsbI	TGCGCA	1 cut(s)	1052
PctI	GAATGC	1 cut(s)	1132
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	6 cut(s)	4, 180, 200, 600, 655, 1187
PkrI	GCNGC	7 cut(s)	166, 395, 514, 556, 874, 1050, 1095
PleI	GAGTC	1 cut(s)	989
PpsI	GAGTC	1 cut(s)	989
Ppu21I	YACGTR	1 cut(s)	1100
Psp6I	CCWGG	1 cut(s)	893
PspGI	CCWGG	1 cut(s)	893
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	986
PstNI	CAGNNNCTG	1 cut(s)	658
RsaI	GTAC	3 cut(s)	320, 329, 1174
RsaNI	GTAC	3 cut(s)	319, 328, 1173
SaqAI	TTAA	2 cut(s)	921, 927
SatI	GCNGC	7 cut(s)	165, 394, 513, 555, 873, 1049, 1094
Sau3AI	GATC	3 cut(s)	584, 938, 1225
Sau96I	GGNCC	1 cut(s)	986
SchI	GAGTC	1 cut(s)	989
ScrFI	CCNGG	1 cut(s)	895
SduI	GDGCHC	1 cut(s)	864
SfaNI	GCATC	2 cut(s)	448, 1169
SfcI	CTRYAG	1 cut(s)	1246
SinI	GGWCC	1 cut(s)	986
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	3 cut(s)	487, 812, 1088
SsiI	CCGC	4 cut(s)	167, 872, 875, 962
StyD4I	CCNGG	1 cut(s)	893
StyI	CCWWGG	2 cut(s)	914, 1040
TaiI	ACGT	4 cut(s)	236, 313, 520, 1102
TaqI	TCGA	2 cut(s)	583, 637
TasI	AATT	3 cut(s)	487, 812, 1088
TauI	GCSGC	1 cut(s)	875
TfiI	GAWTC	6 cut(s)	4, 180, 200, 600, 655, 1187
Tru1I	TTAA	2 cut(s)	921, 927
Tru9I	TTAA	2 cut(s)	921, 927
TscAI	CASTG	5 cut(s)	418, 858, 937, 976, 1197
TseFI	GTSAC	2 cut(s)	889, 1102
TseI	GCWGC	6 cut(s)	164, 393, 512, 554, 1048, 1093
Tsp45I	GTSAC	2 cut(s)	889, 1102
TspDTI	ATGAA	5 cut(s)	17, 350, 481, 583, 1182
TspGWI	ACGGA	2 cut(s)	113, 968
TspRI	CASTG	5 cut(s)	418, 858, 937, 976, 1197
VpaK11BI	GGWCC	1 cut(s)	986
XagI	CCTNNNNNAGG	1 cut(s)	335
XapI	RAATTY	1 cut(s)	812
XcmI	CCANNNNNNNNNTGG	1 cut(s)	410
XmiI	GTMKAC	2 cut(s)	285, 1137
XmnI	GAANNNNTTC	1 cut(s)	501
ZraI	GACGTC	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.