Rw5G023910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002487
Physical Location & Seq
Forward (+)
33892182 .. 33896149
3968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G023910.1

Sequence Viewer

Length: 1107 bp
ATGGATTCCGAAGCAGAGGCTCTTGAGGAGAAGTTGATGTCTTTGCTCGGTCAGCTCCGAGCAGAGCGTGCCATTCTTGAAAGAGTGGTCTACAAGAACAAGAATCAGCATAGACGTTCCTCTTACTTCCAGTACCTAATGAAGGTAAGGAGGGATTTTAGGCTTTTACAATCAACTAAGTTGGAGGAGATTTTGGGCTGCTGTTTCCAAACTATCACTGGAAAGAGACCCAAGCAAAAGATGCATCTATTAGAAAGTTTGAAGAGAAGAAAATGTGAAAGTGGAAAATATAATTTCATGGAACGACTTCTGGGAGCTGCACGTCTTTTATCACAGATGGTTGAACCAATGTTGAAGGCTGCTATTCAGATATCTACATTGCTGGCTCGATCTTTTTTCATGGGATTCTCTTTGACTATCTTAGCTTTGCTTGCACGACTTCGAGTTTTGGTTCAACAGGTATTCCATGACCCTTTTCCAATATTATTCAACATGGTTTCTTCTCTTTCCCAAAAGAAGCAATCAGTTAAAATAAATCAAGAAGGAGTTGAGGTCTTCAGGGAGTTTTACCCTACACAAGAGGATTTTATCACTCTCGAGTGCGTGTGGAAATCTGATAAATTTGACTTGCTTGAGAGGACACATAAGAGCCAGATTGCAAGTCCTGGTGTGGATATTTCTTTAGGGACATCATCTGTGCTTTATCGAAGTATTGAGTCTTCCCTTGGAGGCCAGATGAAAAACCATACTGTTGAGCTCGATCAAGTTCAGGTCATGGAGAACAACATTAATCTATTGTGTGGCCCATCCGATGGTGATGATGTAAAGCTGGTTGAACCTCGTGGGGAGGGTTCAGACATGGAAGACACTCCTAGCAAAGAGCTTTCCCAAGAAGGTTGCTTGGCACAAGTCTCTTCAGGTTCAGAGGCATCAAAACTGAAGTCTGGACCAGTTAAAGTGGCATTCGTACAAATTAAAAAACCCATAACATCATCCGCAAATACATCTGGACTCCATTCTAGAGAAACTGACATCATTAACCATAATAAGGAAGATCCATTGTTCAGCTTGCTTTCTAGTGCCAATGTAAAGAATAGTCTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4477

Protein Analysis

368

Amino Acids

41.53

Weight (kDa)

8.76

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NEPRO_N PF14780 7 - 156 2e-13 Nucleolus and neural progenitor protein, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 812
AccI GTMKAC 1 cut(s) 90
AciI CCGC 1 cut(s) 996
AclWI GGATC 1 cut(s) 1049
AcsI RAATTY 1 cut(s) 620
AcuI CTGAAG 3 cut(s) 541, 900, 959
AfaI GTAC 2 cut(s) 134, 969
AfiI CCNNNNNNNGG 3 cut(s) 142, 812, 1048
AgsI TTSAA 7 cut(s) 80, 262, 344, 355, 455, 490, 836
AjiI CACGTC 1 cut(s) 323
AjnI CCWGG 1 cut(s) 664
AluBI AGCT 7 cut(s) 55, 317, 425, 757, 829, 883, 1068
AluI AGCT 7 cut(s) 55, 317, 425, 757, 829, 883, 1068
Alw21I GWGCWC 1 cut(s) 759
Alw26I GTCTC 3 cut(s) 220, 916, 1103
AlwI GGATC 1 cut(s) 1049
Ama87I CYCGRG 1 cut(s) 596
AoxI GGCC 2 cut(s) 730, 802
ApeKI GCWGC 3 cut(s) 198, 317, 359
ApoI RAATTY 1 cut(s) 620
ArsI GACNNNNNNTTYG 2 cut(s) 926, 958
AseI ATTAAT 1 cut(s) 789
Asp700I GAANNNNTTC 1 cut(s) 306
AspS9I GGNCC 2 cut(s) 803, 947
AsuHPI GGTGA 1 cut(s) 827
AvaI CYCGRG 1 cut(s) 596
AvaII GGWCC 1 cut(s) 947
BanII GRGCYC 1 cut(s) 759
BarI GAAGNNNNNNTAC 2 cut(s) 703, 735
BauI CACGAG 1 cut(s) 840
BbsI GAAGAC 3 cut(s) 547, 711, 870
Bbv12I GWGCWC 1 cut(s) 759
BbvI GCAGC 3 cut(s) 185, 304, 346
BccI CCATC 3 cut(s) 331, 806, 814
BciT130I CCWGG 1 cut(s) 666
BcoDI GTCTC 3 cut(s) 220, 916, 1103
BfaI CTAG 3 cut(s) 873, 1020, 1077
BisI GCNGC 3 cut(s) 199, 318, 360
BlsI GCNGC 3 cut(s) 200, 319, 361
Bme1390I CCNGG 1 cut(s) 666
Bme18I GGWCC 1 cut(s) 947
BmeT110I CYCGRG 1 cut(s) 596
BmgBI CACGTC 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 803, 947
BmrFI CCNGG 1 cut(s) 666
BmsI GCATC 3 cut(s) 231, 253, 938
BpiI GAAGAC 3 cut(s) 547, 711, 870
BpuEI CTTGAG 2 cut(s) 44, 653
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 724
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 812, 1048
Bse1I ACTGG 3 cut(s) 130, 223, 950
Bse3DI GCAATG 1 cut(s) 377
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 1 cut(s) 724
BseGI GGATG 2 cut(s) 806, 992
BseLI CCNNNNNNNGG 3 cut(s) 142, 812, 1048
BseMI GCAATG 1 cut(s) 377
BseNI ACTGG 3 cut(s) 130, 223, 950
BseRI GAGGAG 2 cut(s) 41, 200
BseXI GCAGC 3 cut(s) 185, 304, 346
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 2 cut(s) 732, 804
BsiHKAI GWGCWC 1 cut(s) 759
BsiHKCI CYCGRG 1 cut(s) 596
BslFI GGGAC 1 cut(s) 700
BslI CCNNNNNNNGG 3 cut(s) 142, 812, 1048
BsmAI GTCTC 3 cut(s) 220, 916, 1103
BsmFI GGGAC 1 cut(s) 700
BsmI GAATGC 1 cut(s) 962
BsnI GGCC 2 cut(s) 732, 804
Bso31I GGTCTC 1 cut(s) 220
BsoBI CYCGRG 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 759
Bsp143I GATC 3 cut(s) 389, 760, 1054
BspACI CCGC 1 cut(s) 996
BspANI GGCC 2 cut(s) 732, 804
BspPI GGATC 1 cut(s) 1049
BspTNI GGTCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 377
BsrI ACTGG 3 cut(s) 130, 223, 950
BssECI CCNNGG 1 cut(s) 724
BssMI GATC 3 cut(s) 389, 760, 1054
BssSI CACGAG 1 cut(s) 840
BssT1I CCWWGG 1 cut(s) 724
Bst2BI CACGAG 1 cut(s) 840
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 1 cut(s) 751
Bst6I CTCTTC 2 cut(s) 257, 919
BstAPI GCANNNNNTGC 2 cut(s) 68, 241
BstC8I GCNNGC 4 cut(s) 69, 384, 432, 1070
BstDEI CTNAG 2 cut(s) 177, 421
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 2 cut(s) 806, 992
BstKTI GATC 3 cut(s) 392, 763, 1057
BstMAI GTCTC 3 cut(s) 220, 916, 1103
BstMBI GATC 3 cut(s) 389, 760, 1054
BstMWI GCNNNNNNNGC 4 cut(s) 52, 68, 241, 431
BstNI CCWGG 1 cut(s) 666
BstSCI CCNGG 1 cut(s) 664
BstV1I GCAGC 3 cut(s) 185, 304, 346
BstV2I GAAGAC 3 cut(s) 547, 711, 870
BstX2I RGATCY 1 cut(s) 1054
BstYI RGATCY 1 cut(s) 1054
BsuRI GGCC 2 cut(s) 732, 804
BtrI CACGTC 1 cut(s) 323
BtsCI GGATG 2 cut(s) 806, 992
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 4 cut(s) 69, 384, 432, 1070
Cfr13I GGNCC 2 cut(s) 803, 947
Csp6I GTAC 2 cut(s) 133, 968
CviAII CATG 6 cut(s) 298, 400, 467, 493, 775, 859
CviQI GTAC 2 cut(s) 133, 968
DdeI CTNAG 2 cut(s) 177, 421
DpnI GATC 3 cut(s) 391, 762, 1056
DpnII GATC 3 cut(s) 389, 760, 1054
Eam1104I CTCTTC 2 cut(s) 257, 919
EarI CTCTTC 2 cut(s) 257, 919
Ecl136II GAGCTC 1 cut(s) 757
Eco130I CCWWGG 1 cut(s) 724
Eco24I GRGCYC 1 cut(s) 759
Eco31I GGTCTC 1 cut(s) 220
Eco32I GATATC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 947
Eco53kI GAGCTC 1 cut(s) 757
Eco57I CTGAAG 3 cut(s) 541, 900, 959
Eco88I CYCGRG 1 cut(s) 596
EcoICRI GAGCTC 1 cut(s) 757
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 664
EcoRV GATATC 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 724
EcoT22I ATGCAT 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 759
ErhI CCWWGG 1 cut(s) 724
FaeI CATG 6 cut(s) 301, 403, 470, 496, 778, 862
FaqI GGGAC 1 cut(s) 700
FatI CATG 6 cut(s) 297, 399, 466, 492, 774, 858
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 199, 318, 360
FokI GGATG 2 cut(s) 793, 979
FriOI GRGCYC 1 cut(s) 759
Fsp4HI GCNGC 3 cut(s) 199, 318, 360
FspBI CTAG 3 cut(s) 873, 1020, 1077
GluI GCNGC 3 cut(s) 199, 318, 360
HaeIII GGCC 2 cut(s) 732, 804
Hin1II CATG 6 cut(s) 301, 403, 470, 496, 778, 862
HinfI GANTC 5 cut(s) 5, 103, 405, 716, 1011
HphI GGTGA 1 cut(s) 827
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 8 cut(s) 10, 59, 369, 616, 811, 856, 925, 1106
Hpy188III TCNNGA 7 cut(s) 23, 77, 539, 596, 945, 1008, 1020
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 4 cut(s) 136, 349, 536, 887
HpyCH4III ACNGT 1 cut(s) 751
HpyCH4IV ACGT 2 cut(s) 115, 322
HpyCH4V TGCA 4 cut(s) 244, 320, 434, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 68, 241, 431
HpyF3I CTNAG 2 cut(s) 177, 421
HpySE526I ACGT 2 cut(s) 115, 322
Hsp92II CATG 6 cut(s) 301, 403, 470, 496, 778, 862
Kzo9I GATC 3 cut(s) 389, 760, 1054
LmnI GCTCC 2 cut(s) 60, 314
Lsp1109I GCAGC 3 cut(s) 185, 304, 346
LweI GCATC 3 cut(s) 231, 253, 938
MaeI CTAG 3 cut(s) 873, 1020, 1077
MaeII ACGT 2 cut(s) 115, 322
MalI GATC 3 cut(s) 391, 762, 1056
MboI GATC 3 cut(s) 389, 760, 1054
MboII GAAGA 9 cut(s) 274, 279, 492, 547, 711, 875, 906, 1064, 1093
MflI RGATCY 1 cut(s) 1054
MhlI GDGCHC 1 cut(s) 759
MluCI AATT 3 cut(s) 292, 620, 972
MlyI GAGTC 2 cut(s) 725, 1005
MmeI TCCRAC 1 cut(s) 162
Mph1103I ATGCAT 1 cut(s) 246
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 5 cut(s) 528, 789, 954, 975, 1038
MspR9I CCNGG 1 cut(s) 666
Mva1269I GAATGC 1 cut(s) 962
MvaI CCWGG 1 cut(s) 666
MwoI GCNNNNNNNGC 4 cut(s) 52, 68, 241, 431
NdeII GATC 3 cut(s) 389, 760, 1054
NlaIII CATG 6 cut(s) 301, 403, 470, 496, 778, 862
NsiI ATGCAT 1 cut(s) 246
PaeR7I CTCGAG 1 cut(s) 596
PctI GAATGC 1 cut(s) 962
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 3 cut(s) 5, 103, 405
PflMI CCANNNNNTGG 1 cut(s) 812
PkrI GCNGC 3 cut(s) 200, 319, 361
PleI GAGTC 2 cut(s) 724, 1005
PpsI GAGTC 2 cut(s) 724, 1005
PshBI ATTAAT 1 cut(s) 789
Psp124BI GAGCTC 1 cut(s) 759
Psp6I CCWGG 1 cut(s) 664
PspGI CCWGG 1 cut(s) 664
PspPI GGNCC 2 cut(s) 803, 947
PsuI RGATCY 1 cut(s) 1054
RsaI GTAC 2 cut(s) 134, 969
RsaNI GTAC 2 cut(s) 133, 968
SacI GAGCTC 1 cut(s) 759
SaqAI TTAA 5 cut(s) 528, 789, 954, 975, 1038
SatI GCNGC 3 cut(s) 199, 318, 360
Sau3AI GATC 3 cut(s) 389, 760, 1054
Sau96I GGNCC 2 cut(s) 803, 947
SchI GAGTC 2 cut(s) 725, 1005
ScrFI CCNGG 1 cut(s) 666
SduI GDGCHC 1 cut(s) 759
SfaNI GCATC 3 cut(s) 231, 253, 938
Sfr274I CTCGAG 1 cut(s) 596
SinI GGWCC 1 cut(s) 947
SlaI CTCGAG 1 cut(s) 596
SmlI CTYRAG 3 cut(s) 23, 596, 632
SmoI CTYRAG 3 cut(s) 23, 596, 632
Sse9I AATT 3 cut(s) 292, 620, 972
SsiI CCGC 1 cut(s) 996
SspI AATATT 1 cut(s) 483
SspMI CTAG 3 cut(s) 873, 1020, 1077
SstI GAGCTC 1 cut(s) 759
StyD4I CCNGG 1 cut(s) 664
StyI CCWWGG 1 cut(s) 724
TaaI ACNGT 1 cut(s) 751
TaiI ACGT 2 cut(s) 118, 325
TaqI TCGA 5 cut(s) 388, 442, 597, 706, 759
TaqII GACCGA 1 cut(s) 38
TasI AATT 3 cut(s) 292, 620, 972
TfiI GAWTC 3 cut(s) 5, 103, 405
Tru1I TTAA 5 cut(s) 528, 789, 954, 975, 1038
Tru9I TTAA 5 cut(s) 528, 789, 954, 975, 1038
TscAI CASTG 1 cut(s) 223
TseI GCWGC 3 cut(s) 198, 317, 359
TspDTI ATGAA 4 cut(s) 155, 286, 388, 752
TspRI CASTG 1 cut(s) 223
Van91I CCANNNNNTGG 1 cut(s) 812
VpaK11BI GGWCC 1 cut(s) 947
VspI ATTAAT 1 cut(s) 789
XagI CCTNNNNNAGG 1 cut(s) 140
XapI RAATTY 1 cut(s) 620
XbaI TCTAGA 1 cut(s) 1019
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
XhoI CTCGAG 1 cut(s) 596
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 3 cut(s) 873, 1020, 1077
Zsp2I ATGCAT 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.