FvH4_3g22120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002487
Physical Location & Seq
Forward (+)
15171821 .. 15177077
5257 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22120.t1

Sequence Viewer

Length: 1125 bp
ATGGATTATGAAGCAGAAGCTTTTGAGGAAAAGTTGACGTCTTTGCTTGGTCAGCTCCGAGCTGAATGTGCCATACTTGAAAGAGTGGTCTACAAGAACAAGAACCAGCATAGACGTTCCTCCTACTTCCAGTACCTAATGAAGGTCAGGAGGGATTTGAGACTATTACAATCAACTAAGTTGGAGGATATTTTGAGCTGTTGTTTCCAAAGTATCACTGGAAAGAGACCCAAGCAAAAAGTGCATCTATTAGAAAGTTTGAAGAGAAGAAAATGTGAAAGCGGAAAATATAATTTCATGGAACGACTTCTTGGAGCGGCACGTCTTCTATCACAGATGGTTGAACCAATGTTGAAGGCAGCTATTCAGATATCTACATTGCTGGCTCGATCTTTTTTCATGGGATTTTCTTTGACCATCTTAGCTTTGCTTGCACGACTTCGAGTTTTGGTTCAACAGATTCTGCTTGATGTTGTTTCAGTATTCAACATGGTTTCTTCTCTCTCCCAAAAGAAGCAATCGGTCAAAATAAATCATGAAGGAGTTGAGGTCTTTAGGGAGTTTTACCCTACGCAAGAGGATTACATCACTCTGGACTGCGTGTGGAAAACAGATAAGTTTGAATTGGTTGAGAGGACACATAAGAGCCAGATTACAAGTCCTGGTGTGGATCTTTCTTTAGGGACATCATCTGTGCTTTATAAAAGTATTGACTCTTCCCTTGGAGATGGGGAAATTATGTCCGAGAGTCCAGATGCAAACCATACTGTTGAGCACGATCAAGTTCAGGTCATGGAGAACAACATTGATCTTTTGTTTGGTCCATCCGATGGTGATGATGTAAAGCTGGTTGAACCTTGTGCGAAGGGTTCAAATATGGAAGACACTCCTAGCAAAGAGCTTTCCCAAGAAGTTTGCTTGCCACAAGTCCCTTCAAGTTCACAGGCATCGAAGCTGAAGTCTGGACCAGTTAAAGTCGCATTCATACAAATTAAAAAACCCATAACATCATCCGCTAATACATCTGGAATCCATTCTAGAGAAACTGACAACGTTAGCCAGAATAAGGAAGATCCATTGTTCAGCTTGCTTCCTAGTGCCAATGTAAAACATAATCTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4477

Protein Analysis

375

Amino Acids

42.09

Weight (kDa)

7.6

Isoelectric Point (pI)

50.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NEPRO_N PF14780 10 - 163 2.2e-14 Nucleolus and neural progenitor protein, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 702
AatII GACGTC 1 cut(s) 41
AccB7I CCANNNNNTGG 1 cut(s) 830
AccBSI CCGCTC 1 cut(s) 317
AccI GTMKAC 1 cut(s) 90
AciI CCGC 3 cut(s) 282, 317, 1014
AclI AACGTT 1 cut(s) 1053
AclWI GGATC 2 cut(s) 678, 1067
AcuI CTGAAG 1 cut(s) 977
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 3 cut(s) 142, 830, 1066
AjiI CACGTC 1 cut(s) 323
AjnI CCWGG 1 cut(s) 661
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
Alw21I GWGCWC 1 cut(s) 777
Alw26I GTCTC 2 cut(s) 154, 220
AlwI GGATC 2 cut(s) 678, 1067
AlwNI CAGNNNCTG 1 cut(s) 463
ApeKI GCWGC 1 cut(s) 359
ArsI GACNNNNNNTTYG 2 cut(s) 944, 976
Asp700I GAANNNNTTC 2 cut(s) 306, 1033
AspS9I GGNCC 2 cut(s) 821, 965
AsuHPI GGTGA 1 cut(s) 845
AvaII GGWCC 2 cut(s) 821, 965
BarI GAAGNNNNNNTAC 2 cut(s) 700, 732
BbsI GAAGAC 2 cut(s) 317, 888
Bbv12I GWGCWC 1 cut(s) 777
BbvI GCAGC 1 cut(s) 371
BccI CCATC 5 cut(s) 331, 425, 722, 824, 832
BciT130I CCWGG 1 cut(s) 663
BcoDI GTCTC 2 cut(s) 154, 220
BfaI CTAG 3 cut(s) 891, 1038, 1095
BisI GCNGC 2 cut(s) 318, 360
BlsI GCNGC 2 cut(s) 319, 361
Bme1390I CCNGG 1 cut(s) 663
Bme18I GGWCC 2 cut(s) 821, 965
BmgBI CACGTC 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 821, 965
BmrFI CCNGG 1 cut(s) 663
BmsI GCATC 3 cut(s) 253, 745, 956
BpiI GAAGAC 2 cut(s) 317, 888
BsaHI GRCGYC 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 721
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 830, 1066
Bse1I ACTGG 3 cut(s) 130, 223, 968
Bse3DI GCAATG 1 cut(s) 377
BseBI CCWGG 1 cut(s) 663
BseDI CCNNGG 1 cut(s) 721
BseGI GGATG 2 cut(s) 824, 1010
BseLI CCNNNNNNNGG 3 cut(s) 142, 830, 1066
BseMI GCAATG 1 cut(s) 377
BseNI ACTGG 3 cut(s) 130, 223, 968
BseXI GCAGC 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 777
BslFI GGGAC 2 cut(s) 697, 914
BslI CCNNNNNNNGG 3 cut(s) 142, 830, 1066
BsmAI GTCTC 2 cut(s) 154, 220
BsmFI GGGAC 2 cut(s) 697, 914
BsmI GAATGC 1 cut(s) 980
Bso31I GGTCTC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 777
Bsp143I GATC 5 cut(s) 389, 670, 778, 808, 1072
BspACI CCGC 3 cut(s) 282, 317, 1014
BspHI TCATGA 1 cut(s) 535
BspPI GGATC 2 cut(s) 678, 1067
BspTNI GGTCTC 1 cut(s) 220
BsrBI CCGCTC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 377
BsrI ACTGG 3 cut(s) 130, 223, 968
BssECI CCNNGG 1 cut(s) 721
BssMI GATC 5 cut(s) 389, 670, 778, 808, 1072
BssNI GRCGYC 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 721
Bst2UI CCWGG 1 cut(s) 663
Bst4CI ACNGT 1 cut(s) 769
Bst6I CTCTTC 2 cut(s) 257, 721
BstACI GRCGYC 1 cut(s) 38
BstAPI GCANNNNNTGC 1 cut(s) 241
BstC8I GCNNGC 4 cut(s) 384, 432, 920, 1088
BstDEI CTNAG 2 cut(s) 177, 421
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 2 cut(s) 824, 1010
BstKTI GATC 5 cut(s) 392, 673, 781, 811, 1075
BstMAI GTCTC 2 cut(s) 154, 220
BstMBI GATC 5 cut(s) 389, 670, 778, 808, 1072
BstMWI GCNNNNNNNGC 4 cut(s) 52, 68, 241, 431
BstNI CCWGG 1 cut(s) 663
BstSCI CCNGG 1 cut(s) 661
BstV1I GCAGC 1 cut(s) 371
BstV2I GAAGAC 2 cut(s) 317, 888
BstX2I RGATCY 2 cut(s) 670, 1072
BstYI RGATCY 2 cut(s) 670, 1072
BtrI CACGTC 1 cut(s) 323
BtsCI GGATG 2 cut(s) 824, 1010
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 4 cut(s) 384, 432, 920, 1088
CaiI CAGNNNCTG 1 cut(s) 463
CciI TCATGA 1 cut(s) 535
Cfr13I GGNCC 2 cut(s) 821, 965
Csp6I GTAC 1 cut(s) 133
CviAII CATG 5 cut(s) 298, 400, 490, 536, 793
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 177, 421
DpnI GATC 5 cut(s) 391, 672, 780, 810, 1074
DpnII GATC 5 cut(s) 389, 670, 778, 808, 1072
Eam1104I CTCTTC 2 cut(s) 257, 721
EarI CTCTTC 2 cut(s) 257, 721
Eco130I CCWWGG 1 cut(s) 721
Eco31I GGTCTC 1 cut(s) 220
Eco32I GATATC 1 cut(s) 372
Eco47I GGWCC 2 cut(s) 821, 965
Eco57I CTGAAG 1 cut(s) 977
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 661
EcoRV GATATC 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 721
ErhI CCWWGG 1 cut(s) 721
FaeI CATG 5 cut(s) 301, 403, 493, 539, 796
FaqI GGGAC 2 cut(s) 697, 914
FatI CATG 5 cut(s) 297, 399, 489, 535, 792
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 318, 360
FokI GGATG 2 cut(s) 811, 997
Fsp4HI GCNGC 2 cut(s) 318, 360
FspBI CTAG 3 cut(s) 891, 1038, 1095
GluI GCNGC 2 cut(s) 318, 360
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 5 cut(s) 301, 403, 493, 539, 796
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 4 cut(s) 460, 713, 748, 1029
HphI GGTGA 1 cut(s) 845
Hpy166II GTNNAC 3 cut(s) 36, 91, 941
Hpy188I TCNGA 4 cut(s) 59, 369, 745, 829
Hpy188III TCNNGA 7 cut(s) 148, 536, 593, 752, 963, 1026, 1038
Hpy8I GTNNAC 3 cut(s) 36, 91, 941
HpyAV CCTTC 5 cut(s) 136, 349, 533, 859, 942
HpyCH4III ACNGT 1 cut(s) 769
HpyCH4IV ACGT 4 cut(s) 38, 115, 322, 1053
HpyCH4V TGCA 3 cut(s) 244, 434, 758
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 68, 241, 431
HpyF3I CTNAG 2 cut(s) 177, 421
HpySE526I ACGT 4 cut(s) 38, 115, 322, 1053
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 5 cut(s) 301, 403, 493, 539, 796
Kzo9I GATC 5 cut(s) 389, 670, 778, 808, 1072
LmnI GCTCC 2 cut(s) 60, 314
Lsp1109I GCAGC 1 cut(s) 371
LweI GCATC 3 cut(s) 253, 745, 956
MaeI CTAG 3 cut(s) 891, 1038, 1095
MaeII ACGT 4 cut(s) 38, 115, 322, 1053
MalI GATC 5 cut(s) 391, 672, 780, 810, 1074
MbiI CCGCTC 1 cut(s) 317
MboI GATC 5 cut(s) 389, 670, 778, 808, 1072
MboII GAAGA 7 cut(s) 274, 279, 317, 489, 708, 893, 1082
MflI RGATCY 2 cut(s) 670, 1072
MhlI GDGCHC 1 cut(s) 777
MluCI AATT 4 cut(s) 292, 623, 735, 990
MlyI GAGTC 2 cut(s) 707, 757
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 7 cut(s) 19, 130, 144, 178, 541, 571, 627
MroXI GAANNNNTTC 2 cut(s) 306, 1033
MseI TTAA 2 cut(s) 972, 993
MspR9I CCNGG 1 cut(s) 663
Mva1269I GAATGC 1 cut(s) 980
MvaI CCWGG 1 cut(s) 663
MwoI GCNNNNNNNGC 4 cut(s) 52, 68, 241, 431
NdeII GATC 5 cut(s) 389, 670, 778, 808, 1072
NlaIII CATG 5 cut(s) 301, 403, 493, 539, 796
PagI TCATGA 1 cut(s) 535
PctI GAATGC 1 cut(s) 980
PdmI GAANNNNTTC 2 cut(s) 306, 1033
PfeI GAWTC 2 cut(s) 460, 1029
PflMI CCANNNNNTGG 1 cut(s) 830
PkrI GCNGC 2 cut(s) 319, 361
PleI GAGTC 2 cut(s) 707, 756
PpsI GAGTC 2 cut(s) 707, 756
PsiI TTATAA 1 cut(s) 702
Psp1406I AACGTT 1 cut(s) 1053
Psp6I CCWGG 1 cut(s) 661
PspGI CCWGG 1 cut(s) 661
PspPI GGNCC 2 cut(s) 821, 965
PstNI CAGNNNCTG 1 cut(s) 463
PsuI RGATCY 2 cut(s) 670, 1072
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SaqAI TTAA 2 cut(s) 972, 993
SatI GCNGC 2 cut(s) 318, 360
Sau3AI GATC 5 cut(s) 389, 670, 778, 808, 1072
Sau96I GGNCC 2 cut(s) 821, 965
SchI GAGTC 2 cut(s) 707, 757
ScrFI CCNGG 1 cut(s) 663
SduI GDGCHC 1 cut(s) 777
SfaNI GCATC 3 cut(s) 253, 745, 956
SinI GGWCC 2 cut(s) 821, 965
Sse9I AATT 4 cut(s) 292, 623, 735, 990
SsiI CCGC 3 cut(s) 282, 317, 1014
SspMI CTAG 3 cut(s) 891, 1038, 1095
StyD4I CCNGG 1 cut(s) 661
StyI CCWWGG 1 cut(s) 721
TaaI ACNGT 1 cut(s) 769
TaiI ACGT 4 cut(s) 41, 118, 325, 1056
TaqI TCGA 3 cut(s) 388, 442, 950
TaqII GACCGA 1 cut(s) 511
TasI AATT 4 cut(s) 292, 623, 735, 990
TauI GCSGC 1 cut(s) 320
TfiI GAWTC 2 cut(s) 460, 1029
Tru1I TTAA 2 cut(s) 972, 993
Tru9I TTAA 2 cut(s) 972, 993
TscAI CASTG 1 cut(s) 223
TseI GCWGC 1 cut(s) 359
TspDTI ATGAA 6 cut(s) 24, 155, 286, 388, 552, 973
TspRI CASTG 1 cut(s) 223
Van91I CCANNNNNTGG 1 cut(s) 830
VpaK11BI GGWCC 2 cut(s) 821, 965
XagI CCTNNNNNAGG 1 cut(s) 140
XbaI TCTAGA 1 cut(s) 1037
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 2 cut(s) 306, 1033
XspI CTAG 3 cut(s) 891, 1038, 1095
ZraI GACGTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.