Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002487

Physical Location & Seq

Genomic Coordinates Forward (+)

21858093 .. 21859838

Gene Structure 1746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG107700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGAAGATGTGCAATTACAACACTGCTAGCCTCCATGTCCGGCCACATCCCATCCCACATCACGTCATGGAAAACAACATTGATCTATTGTCTGGTCCGTCCGATGGTGATGATGTAAAGCTGGTTGAATCTTGTGGGGAGGGTTCAAACAAGGAGACTCCTAGCAAAGAGCTTTCCCAAGAAGGTTGCTTGCCGCAAATCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4477

Protein Analysis

68

Amino Acids

7.43

Weight (kDa)

5.09

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50910 AT1G50910
fragaria_vesca	FvH4_3g22120 FvH4_3g22120
malus_domestica	MD03G1208200.v1.1 MD11G1222400.v1.1
prunus_persica	Prupe.4G208500_v2.0.a1
pyrus_communis	pycom11g19620
rosa_chinensis	RchiOBHm_Chr1g0330851 RchiOBHm_Chr5g0037971
rosa_laevigata	RLG00000022534 RLG00000029769 RLG00000029772 RLG00000029783 RLG00000033828
rosa_multiflora	Rmu_sc0002621.1_g000008 Rmu_sc0002621.1_g000015 Rmu_sc0002670.1_g000013 Rmu_sc0002899.1_g000005 Rmu_sc0010964.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319700
rosa_rugosa	Rorug01G0090700 Rorug05G0169800
rosa_samantha	Rh1AG112300 Rh1BG086400 Rh1BG114800 Rh1CG107700 Rh1CG109400 Rh1DG117800 Rh3BG367100 Rh3BG367300 Rh5AG258000 Rh5BG261000 Rh5CG293300 Rh5DG270200 Rh6BG121000 Rh6BG268100 Rh6CG119300
rosa_wichuraiana	Rw1G009090 Rw5G023910 Rw5G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	128, 147
AjiI	CACGTC	1 cut(s)	64
AluBI	AGCT	2 cut(s)	121, 172
AluI	AGCT	2 cut(s)	121, 172
Alw26I	GTCTC	1 cut(s)	149
AoxI	GGCC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	119
AsuNHI	GCTAGC	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	95
BccI	CCATC	2 cut(s)	59, 98
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	2 cut(s)	27, 162
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	95
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	95
BmtI	GCTAGC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
BseGI	GGATG	2 cut(s)	46, 51
BseLI	CCNNNNNNNGG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	82
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	1 cut(s)	43
BspOI	GCTAGC	1 cut(s)	30
BssMI	GATC	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	28, 191
BstF5I	GGATG	2 cut(s)	46, 51
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	43
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	46, 51
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	2 cut(s)	28, 191
Cfr13I	GGNCC	1 cut(s)	95
CviAII	CATG	2 cut(s)	35, 67
CviJI	RGCY	4 cut(s)	30, 43, 121, 172
CviKI_1	RGCY	4 cut(s)	30, 43, 121, 172
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	95
FaeI	CATG	2 cut(s)	38, 70
FaiI	YATR	2 cut(s)	36, 68
FatI	CATG	2 cut(s)	34, 66
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	2 cut(s)	33, 38
Fsp4HI	GCNGC	1 cut(s)	194
FspBI	CTAG	2 cut(s)	27, 162
GluI	GCNGC	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	1 cut(s)	40
Hin1II	CATG	2 cut(s)	38, 70
HinfI	GANTC	2 cut(s)	128, 157
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	38, 70
Kzo9I	GATC	1 cut(s)	82
LpnPI	CCDG	3 cut(s)	53, 78, 107
MaeI	CTAG	2 cut(s)	27, 162
MaeII	ACGT	1 cut(s)	63
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	16
MluCI	AATT	1 cut(s)	13
MlyI	GAGTC	1 cut(s)	151
MnlI	CCTC	2 cut(s)	41, 133
MspI	CCGG	1 cut(s)	40
NdeII	GATC	1 cut(s)	82
NheI	GCTAGC	1 cut(s)	26
NlaIII	CATG	2 cut(s)	38, 70
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	195
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	95
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	151
SetI	ASST	4 cut(s)	66, 123, 174, 187
SinI	GGWCC	1 cut(s)	95
Sse9I	AATT	1 cut(s)	13
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	2 cut(s)	27, 162
TaiI	ACGT	1 cut(s)	66
TasI	AATT	1 cut(s)	13
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	128
TscAI	CASTG	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	95
XspI	CTAG	2 cut(s)	27, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.