Rw5G024090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002487
Physical Location & Seq
Forward (+)
34236362 .. 34240145
3784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G024090.1

Sequence Viewer

Length: 984 bp
ATGAAGGTAAGGAGGGATTTTAGGCTTTTACAATCAACTAAGTTGGAGGAGATTTTGGGCTGCTGTTTCCAAACTATCACTGGAAAGAGACCCAAGCAAAAGATGCATCTATTAGAAAGTTTGAAGAGAAGAAAATGTGAAAGTGGAAAATATAATTTCATGGAACGACTTCTGGGAGCTGCACGTCTTCTGTTGCAGATGGTTGAACCAATGTTGAAGGCTGCTATTCAGATATCTACATTGCTGGCTCGATCTTTTTTCATGGGATTCTCTTTGACTATCTTAGCTTTGCTTGCTCGACTTCGAGTTTTGGTTCAACAGATTCTGCTTGATGTTGTTTCAGTATTCAACATGGTTTCTTCTCTTTCCCAAAAGAAGCAATCAGTTAAAATAAATCAAGAAGGAGTTGAGGTCTTCAGGGAGTTTTACCCTACACAAGAGGATTTTATCACTCTCGAGTGCGTGTGGAAATCTGATAAATTTGACTTGCTTGAGAGGACACATAAGAGCCAGATTGCAAGTCCTGGTGTGGATATTTCTTTAGGGACATCATCTGTGCTTTATCGAAGTATTGAGTCTTCCCTTGGAGATGACGAAATGTCTGAGAGGCCAGATGAAAACCATACTGTTGAGCTCGATCAAGTTCAGGTCATGGAGAACAACATTAATCTATTGTGTGGTCCATCCGATGGTGATGATGTAAAGCTGGTTGAACCTCGTGGGGAGGGTTCAGACATGGAAGACACTCCTAGCAAAGAGCTTTCCCAAGAAGGTTGCTTGGCACAAGTCTCTTCAGGTTCAGAGGCATCAAAACTGAAGTCTGGACCAGTTAAAGTGGCATTCGTACAAATTAAAAAACCCATAACATCATCCGCAAATACATCTGGACTCCATTCTAGAGAAACTGACATCATTAACCATAATAAGGAAGATCCATTGTTCAGCTTGCTTTCTAGTGCCAATGTAAAGAAAAGTCTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4477

Protein Analysis

327

Amino Acids

36.61

Weight (kDa)

6.56

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NEPRO_N PF14780 54 - 117 3.4e-06 Nucleolus and neural progenitor protein, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 689
AciI CCGC 1 cut(s) 873
AclWI GGATC 1 cut(s) 926
AcsI RAATTY 1 cut(s) 479
AcuI CTGAAG 3 cut(s) 400, 777, 836
AfaI GTAC 1 cut(s) 846
AfiI CCNNNNNNNGG 2 cut(s) 689, 925
AgsI TTSAA 6 cut(s) 124, 206, 217, 317, 349, 713
AhdI GACNNNNNGTC 1 cut(s) 598
AjiI CACGTC 1 cut(s) 185
AjnI CCWGG 1 cut(s) 523
AluBI AGCT 6 cut(s) 179, 287, 634, 706, 760, 945
AluI AGCT 6 cut(s) 179, 287, 634, 706, 760, 945
Alw21I GWGCWC 1 cut(s) 636
Alw26I GTCTC 3 cut(s) 82, 793, 980
AlwI GGATC 1 cut(s) 926
AlwNI CAGNNNCTG 1 cut(s) 325
Ama87I CYCGRG 1 cut(s) 455
AoxI GGCC 1 cut(s) 608
ApeKI GCWGC 3 cut(s) 60, 179, 221
ApoI RAATTY 1 cut(s) 479
ArsI GACNNNNNNTTYG 2 cut(s) 803, 835
AseI ATTAAT 1 cut(s) 666
Asp700I GAANNNNTTC 1 cut(s) 168
AspS9I GGNCC 2 cut(s) 680, 824
AsuHPI GGTGA 1 cut(s) 704
AvaI CYCGRG 1 cut(s) 455
AvaII GGWCC 2 cut(s) 680, 824
BanII GRGCYC 1 cut(s) 636
BarI GAAGNNNNNNTAC 2 cut(s) 562, 594
BauI CACGAG 1 cut(s) 717
BbsI GAAGAC 4 cut(s) 179, 406, 570, 747
Bbv12I GWGCWC 1 cut(s) 636
BbvI GCAGC 3 cut(s) 47, 166, 208
BccI CCATC 3 cut(s) 193, 683, 691
BciT130I CCWGG 1 cut(s) 525
BcoDI GTCTC 3 cut(s) 82, 793, 980
BfaI CTAG 3 cut(s) 750, 897, 954
BisI GCNGC 3 cut(s) 61, 180, 222
BlsI GCNGC 3 cut(s) 62, 181, 223
Bme1390I CCNGG 1 cut(s) 525
Bme18I GGWCC 2 cut(s) 680, 824
BmeRI GACNNNNNGTC 1 cut(s) 598
BmeT110I CYCGRG 1 cut(s) 455
BmgBI CACGTC 1 cut(s) 185
BmgT120I GGNCC 2 cut(s) 680, 824
BmrFI CCNGG 1 cut(s) 525
BmsI GCATC 3 cut(s) 93, 115, 815
BpiI GAAGAC 4 cut(s) 179, 406, 570, 747
BpuEI CTTGAG 1 cut(s) 512
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 583
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bsc4I CCNNNNNNNGG 2 cut(s) 689, 925
Bse1I ACTGG 2 cut(s) 85, 827
Bse3DI GCAATG 1 cut(s) 239
BseBI CCWGG 1 cut(s) 525
BseDI CCNNGG 1 cut(s) 583
BseGI GGATG 2 cut(s) 683, 869
BseLI CCNNNNNNNGG 2 cut(s) 689, 925
BseMI GCAATG 1 cut(s) 239
BseMII CTCAG 1 cut(s) 594
BseNI ACTGG 2 cut(s) 85, 827
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 3 cut(s) 47, 166, 208
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 1 cut(s) 610
BsiHKAI GWGCWC 1 cut(s) 636
BsiHKCI CYCGRG 1 cut(s) 455
BslFI GGGAC 1 cut(s) 559
BslI CCNNNNNNNGG 2 cut(s) 689, 925
BsmAI GTCTC 3 cut(s) 82, 793, 980
BsmFI GGGAC 1 cut(s) 559
BsmI GAATGC 1 cut(s) 839
BsnI GGCC 1 cut(s) 610
Bso31I GGTCTC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 636
Bsp143I GATC 3 cut(s) 251, 637, 931
BspACI CCGC 1 cut(s) 873
BspANI GGCC 1 cut(s) 610
BspCNI CTCAG 1 cut(s) 595
BspPI GGATC 1 cut(s) 926
BspTNI GGTCTC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 239
BsrI ACTGG 2 cut(s) 85, 827
BssECI CCNNGG 1 cut(s) 583
BssMI GATC 3 cut(s) 251, 637, 931
BssSI CACGAG 1 cut(s) 717
BssT1I CCWWGG 1 cut(s) 583
Bst2BI CACGAG 1 cut(s) 717
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 1 cut(s) 628
Bst6I CTCTTC 2 cut(s) 119, 796
BstAPI GCANNNNNTGC 1 cut(s) 103
BstC8I GCNNGC 3 cut(s) 246, 294, 947
BstDEI CTNAG 3 cut(s) 39, 283, 603
BstF5I GGATG 2 cut(s) 683, 869
BstKTI GATC 3 cut(s) 254, 640, 934
BstMAI GTCTC 3 cut(s) 82, 793, 980
BstMBI GATC 3 cut(s) 251, 637, 931
BstMWI GCNNNNNNNGC 2 cut(s) 103, 293
BstNI CCWGG 1 cut(s) 525
BstSCI CCNGG 1 cut(s) 523
BstV1I GCAGC 3 cut(s) 47, 166, 208
BstV2I GAAGAC 4 cut(s) 179, 406, 570, 747
BstX2I RGATCY 1 cut(s) 931
BstYI RGATCY 1 cut(s) 931
BsuRI GGCC 1 cut(s) 610
BtrI CACGTC 1 cut(s) 185
BtsCI GGATG 2 cut(s) 683, 869
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 3 cut(s) 246, 294, 947
CaiI CAGNNNCTG 1 cut(s) 325
Cfr13I GGNCC 2 cut(s) 680, 824
Csp6I GTAC 1 cut(s) 845
CviAII CATG 5 cut(s) 160, 262, 352, 652, 736
CviQI GTAC 1 cut(s) 845
DdeI CTNAG 3 cut(s) 39, 283, 603
DpnI GATC 3 cut(s) 253, 639, 933
DpnII GATC 3 cut(s) 251, 637, 931
DriI GACNNNNNGTC 1 cut(s) 598
Eam1104I CTCTTC 2 cut(s) 119, 796
Eam1105I GACNNNNNGTC 1 cut(s) 598
EarI CTCTTC 2 cut(s) 119, 796
Ecl136II GAGCTC 1 cut(s) 634
Eco130I CCWWGG 1 cut(s) 583
Eco24I GRGCYC 1 cut(s) 636
Eco31I GGTCTC 1 cut(s) 82
Eco32I GATATC 1 cut(s) 234
Eco47I GGWCC 2 cut(s) 680, 824
Eco53kI GAGCTC 1 cut(s) 634
Eco57I CTGAAG 3 cut(s) 400, 777, 836
Eco88I CYCGRG 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 634
EcoRII CCWGG 1 cut(s) 523
EcoRV GATATC 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 583
EcoT22I ATGCAT 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 636
ErhI CCWWGG 1 cut(s) 583
FaeI CATG 5 cut(s) 163, 265, 355, 655, 739
FaqI GGGAC 1 cut(s) 559
FatI CATG 5 cut(s) 159, 261, 351, 651, 735
Fnu4HI GCNGC 3 cut(s) 61, 180, 222
FokI GGATG 2 cut(s) 670, 856
FriOI GRGCYC 1 cut(s) 636
Fsp4HI GCNGC 3 cut(s) 61, 180, 222
FspBI CTAG 3 cut(s) 750, 897, 954
GluI GCNGC 3 cut(s) 61, 180, 222
HaeIII GGCC 1 cut(s) 610
Hin1II CATG 5 cut(s) 163, 265, 355, 655, 739
HinfI GANTC 4 cut(s) 267, 322, 575, 888
HphI GGTGA 1 cut(s) 704
Hpy188I TCNGA 7 cut(s) 231, 475, 604, 688, 733, 802, 983
Hpy188III TCNNGA 5 cut(s) 398, 455, 822, 885, 897
HpyAV CCTTC 3 cut(s) 211, 395, 764
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 4 cut(s) 106, 182, 196, 518
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 293
HpyF3I CTNAG 3 cut(s) 39, 283, 603
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 5 cut(s) 163, 265, 355, 655, 739
Kzo9I GATC 3 cut(s) 251, 637, 931
LmnI GCTCC 1 cut(s) 176
Lsp1109I GCAGC 3 cut(s) 47, 166, 208
LweI GCATC 3 cut(s) 93, 115, 815
MaeI CTAG 3 cut(s) 750, 897, 954
MaeII ACGT 1 cut(s) 184
MalI GATC 3 cut(s) 253, 639, 933
MboI GATC 3 cut(s) 251, 637, 931
MflI RGATCY 1 cut(s) 931
MhlI GDGCHC 1 cut(s) 636
MluCI AATT 3 cut(s) 154, 479, 849
MlyI GAGTC 2 cut(s) 584, 882
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 9 cut(s) 6, 40, 403, 433, 489, 600, 718, 726, 796
Mph1103I ATGCAT 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 5 cut(s) 387, 666, 831, 852, 915
MspR9I CCNGG 1 cut(s) 525
Mva1269I GAATGC 1 cut(s) 839
MvaI CCWGG 1 cut(s) 525
MwoI GCNNNNNNNGC 2 cut(s) 103, 293
NdeII GATC 3 cut(s) 251, 637, 931
NlaIII CATG 5 cut(s) 163, 265, 355, 655, 739
NsiI ATGCAT 1 cut(s) 108
PaeR7I CTCGAG 1 cut(s) 455
PctI GAATGC 1 cut(s) 839
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 2 cut(s) 267, 322
PflMI CCANNNNNTGG 1 cut(s) 689
PkrI GCNGC 3 cut(s) 62, 181, 223
PleI GAGTC 2 cut(s) 583, 882
PpsI GAGTC 2 cut(s) 583, 882
PshBI ATTAAT 1 cut(s) 666
Psp124BI GAGCTC 1 cut(s) 636
Psp6I CCWGG 1 cut(s) 523
PspGI CCWGG 1 cut(s) 523
PspPI GGNCC 2 cut(s) 680, 824
PstNI CAGNNNCTG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 931
RsaI GTAC 1 cut(s) 846
RsaNI GTAC 1 cut(s) 845
SacI GAGCTC 1 cut(s) 636
SaqAI TTAA 5 cut(s) 387, 666, 831, 852, 915
SatI GCNGC 3 cut(s) 61, 180, 222
Sau3AI GATC 3 cut(s) 251, 637, 931
Sau96I GGNCC 2 cut(s) 680, 824
SchI GAGTC 2 cut(s) 584, 882
ScrFI CCNGG 1 cut(s) 525
SduI GDGCHC 1 cut(s) 636
SfaNI GCATC 3 cut(s) 93, 115, 815
Sfr274I CTCGAG 1 cut(s) 455
SinI GGWCC 2 cut(s) 680, 824
SlaI CTCGAG 1 cut(s) 455
SmlI CTYRAG 2 cut(s) 455, 491
SmoI CTYRAG 2 cut(s) 455, 491
Sse9I AATT 3 cut(s) 154, 479, 849
SsiI CCGC 1 cut(s) 873
SspMI CTAG 3 cut(s) 750, 897, 954
SstI GAGCTC 1 cut(s) 636
StyD4I CCNGG 1 cut(s) 523
StyI CCWWGG 1 cut(s) 583
TaaI ACNGT 1 cut(s) 628
TaiI ACGT 1 cut(s) 187
TaqI TCGA 6 cut(s) 250, 298, 304, 456, 565, 636
TasI AATT 3 cut(s) 154, 479, 849
TfiI GAWTC 2 cut(s) 267, 322
Tru1I TTAA 5 cut(s) 387, 666, 831, 852, 915
Tru9I TTAA 5 cut(s) 387, 666, 831, 852, 915
TscAI CASTG 1 cut(s) 85
TseI GCWGC 3 cut(s) 60, 179, 221
TspDTI ATGAA 4 cut(s) 17, 148, 250, 630
TspRI CASTG 1 cut(s) 85
Van91I CCANNNNNTGG 1 cut(s) 689
VpaK11BI GGWCC 2 cut(s) 680, 824
VspI ATTAAT 1 cut(s) 666
XapI RAATTY 1 cut(s) 479
XbaI TCTAGA 1 cut(s) 896
XcmI CCANNNNNNNNNTGG 1 cut(s) 77
XhoI CTCGAG 1 cut(s) 455
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 3 cut(s) 750, 897, 954
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.