Rh1DG117800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002487
Physical Location & Seq
Reverse (-)
21432374 .. 21437255
4882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG117800.1

Sequence Viewer

Length: 720 bp
ATGATGAGGGCTGCTGAGGAAGCATTGGAAGCACAGAAAAAGCAAAAACCTTCGTTTGAGCTATCTGGAAAAGTTACTGCGGAAACCAATAGATTCAGGGGGTTCCTGATGGATTCTGAAGCAGAAGCTCTTGAGGAGAAGCTGACGTCTTTGTTTGGTCAGCTCCGAGCTGAGTGTGCTATTCTTGAAAGAGTGGTCTACAAGAACAAGAACCAGCATAGACGTTCCTCGTACTTCCAGTACCTAATGAAGGTAAGGAGGGATTTGAGGCTTTTACAATCAACTAAGTTGGAGGAGATTTTGGGCTGCTGTTTCCAAAGTATCACTGGAAAGAGACCCAAGCAAAAGGTGCATCTATTAGAAAGTTTGAAGAGAAGAAAATGTGAAAGTGGAAAATATAATTTCATGGAACGACTTCTGGGAGCTGCACGTCTTTTATCACAGATGGTTGAACCAATGTTGAAGGCTGCTATTCAGATATCTGCATTGCTGGCTCGATCTTTTTTCATGGGATTCTCTTTGACTATCTTAGCTTTGCTTGCACGACTTCGAGTTTTGGTTCAACAGATTCTGCTTGATGTTGTTTCAGTATTCAACATGGTTTCTTCTCTCTCCCAAAAGAAGCAATCAGTTAAAATAAATCAAGAAGGAGTTGAGGTCTTCAGGGAGTTTTACCCTACACGAGGATTTTATCACCCTGGAGTGCGTGTGGAAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4477

Protein Analysis

239

Amino Acids

27.56

Weight (kDa)

9.91

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NEPRO_N PF14780 42 - 199 1.3e-15 Nucleolus and neural progenitor protein, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 198
AciI CCGC 1 cut(s) 80
AcuI CTGAAG 2 cut(s) 138, 646
AcyI GRCGYC 1 cut(s) 146
AfaI GTAC 2 cut(s) 233, 242
AfiI CCNNNNNNNGG 2 cut(s) 250, 683
AgsI TTSAA 6 cut(s) 188, 370, 452, 463, 563, 595
AjiI CACGTC 1 cut(s) 431
AjnI CCWGG 1 cut(s) 697
AluBI AGCT 7 cut(s) 61, 128, 142, 163, 170, 425, 533
AluI AGCT 7 cut(s) 61, 128, 142, 163, 170, 425, 533
Alw26I GTCTC 1 cut(s) 328
AlwNI CAGNNNCTG 1 cut(s) 571
ApeKI GCWGC 4 cut(s) 11, 306, 425, 467
Asp700I GAANNNNTTC 1 cut(s) 414
AsuHPI GGTGA 1 cut(s) 686
BauI CACGAG 1 cut(s) 681
BbsI GAAGAC 1 cut(s) 652
BbvCI CCTCAGC 1 cut(s) 15
BbvI GCAGC 3 cut(s) 293, 412, 454
BccI CCATC 2 cut(s) 103, 439
BciT130I CCWGG 1 cut(s) 699
BcoDI GTCTC 1 cut(s) 328
BisI GCNGC 4 cut(s) 12, 307, 426, 468
BlsI GCNGC 4 cut(s) 13, 308, 427, 469
Bme1390I CCNGG 1 cut(s) 699
BmgBI CACGTC 1 cut(s) 431
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 699
BmsI GCATC 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 652
BpmI CTGGAG 1 cut(s) 720
Bpu10I CCTNAGC 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 146
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 697
BsaXI ACNNNNNCTCC 3 cut(s) 642, 672, 693
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 683
Bse1I ACTGG 2 cut(s) 238, 331
Bse3DI GCAATG 1 cut(s) 485
BseBI CCWGG 1 cut(s) 699
BseDI CCNNGG 1 cut(s) 697
BseLI CCNNNNNNNGG 2 cut(s) 250, 683
BseMI GCAATG 1 cut(s) 485
BseMII CTCAG 2 cut(s) 6, 162
BseNI ACTGG 2 cut(s) 238, 331
BseRI GAGGAG 2 cut(s) 149, 308
BseXI GCAGC 3 cut(s) 293, 412, 454
BsgI GTGCAG 1 cut(s) 411
BslI CCNNNNNNNGG 2 cut(s) 250, 683
BsmAI GTCTC 1 cut(s) 328
Bso31I GGTCTC 1 cut(s) 328
Bsp143I GATC 1 cut(s) 497
BspACI CCGC 1 cut(s) 80
BspCNI CTCAG 2 cut(s) 7, 163
BspLI GGNNCC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 485
BsrI ACTGG 2 cut(s) 238, 331
BssECI CCNNGG 1 cut(s) 697
BssMI GATC 1 cut(s) 497
BssNI GRCGYC 1 cut(s) 146
BssSI CACGAG 1 cut(s) 681
Bst2BI CACGAG 1 cut(s) 681
Bst2UI CCWGG 1 cut(s) 699
Bst6I CTCTTC 1 cut(s) 365
BstACI GRCGYC 1 cut(s) 146
BstAPI GCANNNNNTGC 1 cut(s) 349
BstC8I GCNNGC 2 cut(s) 492, 540
BstDEI CTNAG 4 cut(s) 15, 171, 285, 529
BstENI CCTNNNNNAGG 2 cut(s) 248, 681
BstKTI GATC 1 cut(s) 500
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 1 cut(s) 497
BstMWI GCNNNNNNNGC 6 cut(s) 20, 29, 176, 349, 491, 539
BstNI CCWGG 1 cut(s) 699
BstSCI CCNGG 1 cut(s) 697
BstV1I GCAGC 3 cut(s) 293, 412, 454
BstV2I GAAGAC 1 cut(s) 652
BtrI CACGTC 1 cut(s) 431
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 492, 540
CaiI CAGNNNCTG 1 cut(s) 571
Csp6I GTAC 2 cut(s) 232, 241
CviAII CATG 3 cut(s) 406, 508, 598
CviQI GTAC 2 cut(s) 232, 241
DdeI CTNAG 4 cut(s) 15, 171, 285, 529
DpnI GATC 1 cut(s) 499
DpnII GATC 1 cut(s) 497
Eam1104I CTCTTC 1 cut(s) 365
EarI CTCTTC 1 cut(s) 365
Eco31I GGTCTC 1 cut(s) 328
Eco32I GATATC 1 cut(s) 480
Eco57I CTGAAG 2 cut(s) 138, 646
EcoNI CCTNNNNNAGG 2 cut(s) 248, 681
EcoRII CCWGG 1 cut(s) 697
EcoRV GATATC 1 cut(s) 480
FaeI CATG 3 cut(s) 409, 511, 601
FaiI YATR 5 cut(s) 219, 399, 407, 509, 599
FatI CATG 3 cut(s) 405, 507, 597
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 4 cut(s) 12, 307, 426, 468
Fsp4HI GCNGC 4 cut(s) 12, 307, 426, 468
GluI GCNGC 4 cut(s) 12, 307, 426, 468
GsuI CTGGAG 1 cut(s) 720
Hin1I GRCGYC 1 cut(s) 146
Hin1II CATG 3 cut(s) 409, 511, 601
HinfI GANTC 4 cut(s) 93, 113, 513, 568
HphI GGTGA 1 cut(s) 686
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 4 cut(s) 118, 167, 477, 719
Hpy188III TCNNGA 5 cut(s) 66, 106, 131, 185, 644
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 4 cut(s) 60, 244, 457, 641
HpyCH4IV ACGT 3 cut(s) 146, 223, 430
HpyCH4V TGCA 4 cut(s) 352, 428, 485, 542
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 29, 176, 349, 491, 539
HpyF3I CTNAG 4 cut(s) 15, 171, 285, 529
HpySE526I ACGT 3 cut(s) 146, 223, 430
Hsp92I GRCGYC 1 cut(s) 146
Hsp92II CATG 3 cut(s) 409, 511, 601
Kzo9I GATC 1 cut(s) 497
LmnI GCTCC 2 cut(s) 168, 422
Lsp1109I GCAGC 3 cut(s) 293, 412, 454
LweI GCATC 1 cut(s) 361
MaeII ACGT 3 cut(s) 146, 223, 430
MaeIII GTNAC 1 cut(s) 73
MalI GATC 1 cut(s) 499
MboI GATC 1 cut(s) 497
MboII GAAGA 4 cut(s) 382, 387, 597, 652
MluCI AATT 1 cut(s) 400
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 8 cut(s) 10, 127, 238, 252, 261, 286, 649, 677
MroXI GAANNNNTTC 1 cut(s) 414
MseI TTAA 1 cut(s) 633
MspR9I CCNGG 1 cut(s) 699
MvaI CCWGG 1 cut(s) 699
MwoI GCNNNNNNNGC 6 cut(s) 20, 29, 176, 349, 491, 539
NdeII GATC 1 cut(s) 497
NlaIII CATG 3 cut(s) 409, 511, 601
NlaIV GGNNCC 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 414
PfeI GAWTC 4 cut(s) 93, 113, 513, 568
PkrI GCNGC 4 cut(s) 13, 308, 427, 469
Psp6I CCWGG 1 cut(s) 697
PspGI CCWGG 1 cut(s) 697
PspN4I GGNNCC 1 cut(s) 104
PstNI CAGNNNCTG 1 cut(s) 571
RsaI GTAC 2 cut(s) 233, 242
RsaNI GTAC 2 cut(s) 232, 241
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 4 cut(s) 12, 307, 426, 468
Sau3AI GATC 1 cut(s) 497
ScrFI CCNGG 1 cut(s) 699
SfaNI GCATC 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 1 cut(s) 400
SsiI CCGC 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 697
TaiI ACGT 3 cut(s) 149, 226, 433
TaqI TCGA 2 cut(s) 496, 550
TasI AATT 1 cut(s) 400
TfiI GAWTC 4 cut(s) 93, 113, 513, 568
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TscAI CASTG 1 cut(s) 331
TseI GCWGC 4 cut(s) 11, 306, 425, 467
TspDTI ATGAA 3 cut(s) 263, 394, 496
TspRI CASTG 1 cut(s) 331
XagI CCTNNNNNAGG 2 cut(s) 248, 681
XcmI CCANNNNNNNNNTGG 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 414
ZraI GACGTC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.