Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002487

Physical Location & Seq

Genomic Coordinates Reverse (-)

18866753 .. 18869933

Gene Structure 3181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G50910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGGATGATACACAAGTTAAAGCTCTAGAAGAGAAGCTGAAGAGTCAGCTAAGTCAGCTTGAACTCGAGCAAGCGGTGTTCGAGAGAATGGTTTACAAGAATAAGAACCAGCATCGGAGATGCTCTTATTTTCAATACCTTCTCAAGGTGAGAAGAGAATTGAGACTTTTACGAACAGCAAACATGGAGGGTATGTTGAGACCTTGCTTTCATGTTATATCTGGGAGAATAAGTAAACAGAAAATCCATGTTTTGGAGAGCTTGAAGTTGAAAAAATCTGATACTGGGAAACCAAATATCTTGGAACGGCTTCTTGGAGCTCTTCGTTTACTCTCACAGATGACTGAACCCATCTTAAAGGCAGCTAGTGGGATATCTACTCTACTAGCTCGTTCATTCTTCATAGGATTTTCTGTGACATTTTTGGCGCTGCTTGCACGTCTCCGAGTATTGGTCCAACAAATATTACTTGACGCTGTTTCAGTTTTCAATTCGGTGACATCTACATCACTGAAGAAACAGTCTGTCAAGATAGCACAGGACGGGGTTGAGGTTTTCCGCGAGTTCTATCCAAAGGAAGAAGAGTGTGTCACCTTATTGGATTGTGTATGGAAGACTGATAAATATGTCTTACTCGAGACATTGCAGAACTCTGAGAATAGTAAACCTATGGAAAAAAATGTCTCAGAAGATGTTACTACTAGGGACTCTTTGGTACAGTATCAAACATCTGTTTCTTCTCTCGCGGAAGATCTCTCTCCTTTGCTTCGAGCAGACAACAGTGGTGCTACTGTGAGAGAAAGTTCGACTCCCATTGATGAAGCAGCTTCGTCCAAGACTAACATTGGGTTGCAACCAGAGGATTCAGAAAACCCAGAAGATGCGACAACTAGGGACTGTTCGGTTCAGTATGAAACGTTTGTTTCTCCTCTTGGAGAAGATCTCTCTCCTTTGCTTGAAGCCGACAACAGTGGTGTTACTTTGAGAGAAAGTTCTACTCCCATTGCCGAAGCAGCTTCTTCCAAGACTAACAATGCATCGCAACCAGAAGATTCAGAAAACCTAGAAGATACTACAACTAAGGATTGTTCAATTCAGTATCAAACGTTTGTTTCTCCTCTTGGAGAAGATATCACACCTTCTCCTCTGCCTGATGCAGACGAAAACGGATATGATACTGCTACAGAGTCTTTGACTCCCATTGCTGAAGCAGCCTCTTCCAAGACTAACGATGAATCCCAAACAGAAGATATGGAAAAAGTAGAAGATGAATCTACAAATCCCGTGAGCTCGGCAAAAATTAACAGAGACACAGTAAAACCAAGATTCAGAGCAACCAAGGTAGCGTTTCTACCTGTAAAAAGACCTTCATCTGCAATAACGCCAAACACCATAGAACAACCCCCATTGAAGAAACAAGAAACTGGCGAGAAAGACAAAAAGGAAGAAGATGGATTTTATAATCTACTCATCCGCGGAACACAGAAAGACAGTTTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4477

Protein Analysis

500

Amino Acids

55.72

Weight (kDa)

4.97

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50910 AT1G50910
fragaria_vesca	FvH4_3g22120 FvH4_3g22120
malus_domestica	MD03G1208200.v1.1 MD11G1222400.v1.1
prunus_persica	Prupe.4G208500_v2.0.a1
pyrus_communis	pycom11g19620
rosa_chinensis	RchiOBHm_Chr1g0330851 RchiOBHm_Chr5g0037971
rosa_laevigata	RLG00000022534 RLG00000029769 RLG00000029772 RLG00000029783 RLG00000033828
rosa_multiflora	Rmu_sc0002621.1_g000008 Rmu_sc0002621.1_g000015 Rmu_sc0002670.1_g000013 Rmu_sc0002899.1_g000005 Rmu_sc0010964.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319700
rosa_rugosa	Rorug01G0090700 Rorug05G0169800
rosa_samantha	Rh1AG112300 Rh1BG086400 Rh1BG114800 Rh1CG107700 Rh1CG109400 Rh1DG117800 Rh3BG367100 Rh3BG367300 Rh5AG258000 Rh5BG261000 Rh5CG293300 Rh5DG270200 Rh6BG121000 Rh6BG268100 Rh6CG119300
rosa_wichuraiana	Rw1G009090 Rw5G023910 Rw5G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1461
AccB7I	CCANNNNNTGG	1 cut(s)	253
AccII	CGCG	3 cut(s)	561, 746, 1476
AciI	CCGC	5 cut(s)	74, 559, 746, 1474, 1476
AclI	AACGTT	2 cut(s)	917, 1106
AcuI	CTGAAG	3 cut(s)	59, 533, 1227
AfaI	GTAC	1 cut(s)	717
AfiI	CCNNNNNNNGG	3 cut(s)	145, 253, 451
AgsI	TTSAA	8 cut(s)	62, 134, 265, 271, 490, 959, 1092, 1411
AjiI	CACGTC	1 cut(s)	440
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
Alw21I	GWGCWC	2 cut(s)	322, 1292
Alw26I	GTCTC	6 cut(s)	157, 193, 446, 632, 688, 1302
Ama87I	CYCGRG	2 cut(s)	65, 635
ApeKI	GCWGC	5 cut(s)	362, 430, 824, 1013, 1211
Asp700I	GAANNNNTTC	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	1 cut(s)	454
AsuHPI	GGTGA	3 cut(s)	160, 508, 583
AvaI	CYCGRG	2 cut(s)	65, 635
AvaII	GGWCC	1 cut(s)	454
BaeI	ACNNNNGTAYC	1 cut(s)	33
BanII	GRGCYC	2 cut(s)	322, 1292
BbsI	GAAGAC	1 cut(s)	620
Bbv12I	GWGCWC	2 cut(s)	322, 1292
BbvI	GCAGC	5 cut(s)	374, 417, 836, 1025, 1223
BccI	CCATC	2 cut(s)	359, 1445
BceAI	ACGGC	1 cut(s)	323
BcoDI	GTCTC	6 cut(s)	157, 193, 446, 632, 688, 1302
BfaI	CTAG	7 cut(s)	26, 366, 386, 702, 891, 1064, 1501
BfmI	CTRYAG	1 cut(s)	1182
BfoI	RGCGCY	1 cut(s)	431
BglII	AGATCT	2 cut(s)	751, 940
BisI	GCNGC	5 cut(s)	363, 431, 825, 1014, 1212
BlsI	GCNGC	5 cut(s)	364, 432, 826, 1015, 1213
Bme18I	GGWCC	1 cut(s)	454
BmeT110I	CYCGRG	2 cut(s)	65, 635
BmgBI	CACGTC	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	454
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	5 cut(s)	110, 121, 871, 1046, 1144
BmuI	ACTGGG	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	620
BplI	GAGNNNNNCTC	2 cut(s)	927, 959
BpuEI	CTTGAG	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	1338, 1474
BsaXI	ACNNNNNCTCC	6 cut(s)	179, 209, 217, 247, 1126, 1156
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 253, 451
Bse1I	ACTGG	2 cut(s)	289, 1429
Bse3DI	GCAATG	3 cut(s)	641, 1002, 1200
BseDI	CCNNGG	2 cut(s)	1338, 1474
BseGI	GGATG	2 cut(s)	10, 1470
BseLI	CCNNNNNNNGG	3 cut(s)	145, 253, 451
BseMI	GCAATG	3 cut(s)	641, 1002, 1200
BseMII	CTCAG	2 cut(s)	645, 699
BseNI	ACTGG	2 cut(s)	289, 1429
BseRI	GAGGAG	3 cut(s)	918, 1107, 1134
BseXI	GCAGC	5 cut(s)	374, 417, 836, 1025, 1223
Bsh1236I	CGCG	3 cut(s)	561, 746, 1476
BsiHKAI	GWGCWC	2 cut(s)	322, 1292
BsiHKCI	CYCGRG	2 cut(s)	65, 635
BslFI	GGGAC	2 cut(s)	719, 908
BslI	CCNNNNNNNGG	3 cut(s)	145, 253, 451
BsmAI	GTCTC	6 cut(s)	157, 193, 446, 632, 688, 1302
BsmBI	CGTCTC	1 cut(s)	446
BsmFI	GGGAC	2 cut(s)	719, 908
Bso31I	GGTCTC	1 cut(s)	193
BsoBI	CYCGRG	2 cut(s)	65, 635
Bsp1286I	GDGCHC	2 cut(s)	322, 1292
Bsp143I	GATC	2 cut(s)	751, 940
BspACI	CCGC	5 cut(s)	74, 559, 746, 1474, 1476
BspCNI	CTCAG	2 cut(s)	646, 698
BspFNI	CGCG	3 cut(s)	561, 746, 1476
BspQI	GCTCTTC	1 cut(s)	327
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	3 cut(s)	641, 1002, 1200
BsrI	ACTGG	2 cut(s)	289, 1429
BssECI	CCNNGG	2 cut(s)	1338, 1474
BssMI	GATC	2 cut(s)	751, 940
BssT1I	CCWWGG	1 cut(s)	1338
Bst4CI	ACNGT	8 cut(s)	522, 720, 782, 793, 899, 971, 1315, 1493
Bst6I	CTCTTC	6 cut(s)	24, 35, 148, 327, 576, 1222
BstC8I	GCNNGC	2 cut(s)	72, 435
BstDEI	CTNAG	4 cut(s)	50, 654, 685, 1080
BstDSI	CCRYGG	1 cut(s)	1474
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	10, 1470
BstFNI	CGCG	3 cut(s)	561, 746, 1476
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	2 cut(s)	754, 943
BstMAI	GTCTC	6 cut(s)	157, 193, 446, 632, 688, 1302
BstMBI	GATC	2 cut(s)	751, 940
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 434, 1013, 1211
BstSFI	CTRYAG	1 cut(s)	1182
BstUI	CGCG	3 cut(s)	561, 746, 1476
BstV1I	GCAGC	5 cut(s)	374, 417, 836, 1025, 1223
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	2 cut(s)	751, 940
BstYI	RGATCY	2 cut(s)	751, 940
BtgI	CCRYGG	1 cut(s)	1474
BtgZI	GCGATG	1 cut(s)	1023
BtrI	CACGTC	1 cut(s)	440
BtsCI	GGATG	2 cut(s)	10, 1470
BtsIMutI	CAGTG	3 cut(s)	509, 787, 976
Cac8I	GCNNGC	2 cut(s)	72, 435
CfoI	GCGC	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	454
Cfr42I	CCGCGG	1 cut(s)	1477
CseI	GACGC	1 cut(s)	482
Csp6I	GTAC	1 cut(s)	716
CviAII	CATG	3 cut(s)	184, 212, 248
CviQI	GTAC	1 cut(s)	716
DdeI	CTNAG	4 cut(s)	50, 654, 685, 1080
DpnI	GATC	2 cut(s)	753, 942
DpnII	GATC	2 cut(s)	751, 940
Eam1104I	CTCTTC	6 cut(s)	24, 35, 148, 327, 576, 1222
EarI	CTCTTC	6 cut(s)	24, 35, 148, 327, 576, 1222
Ecl136II	GAGCTC	2 cut(s)	320, 1290
Eco130I	CCWWGG	1 cut(s)	1338
Eco24I	GRGCYC	2 cut(s)	322, 1292
Eco31I	GGTCTC	1 cut(s)	193
Eco32I	GATATC	2 cut(s)	375, 1132
Eco47I	GGWCC	1 cut(s)	454
Eco53kI	GAGCTC	2 cut(s)	320, 1290
Eco57I	CTGAAG	3 cut(s)	59, 533, 1227
Eco88I	CYCGRG	2 cut(s)	65, 635
EcoICRI	GAGCTC	2 cut(s)	320, 1290
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoRV	GATATC	2 cut(s)	375, 1132
EcoT14I	CCWWGG	1 cut(s)	1338
EcoT22I	ATGCAT	1 cut(s)	1039
EcoT38I	GRGCYC	2 cut(s)	322, 1292
ErhI	CCWWGG	1 cut(s)	1338
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	3 cut(s)	187, 215, 251
FaqI	GGGAC	2 cut(s)	719, 908
FatI	CATG	3 cut(s)	183, 211, 247
Fnu4HI	GCNGC	5 cut(s)	363, 431, 825, 1014, 1212
FokI	GGATG	2 cut(s)	17, 1457
FriOI	GRGCYC	2 cut(s)	322, 1292
Fsp4HI	GCNGC	5 cut(s)	363, 431, 825, 1014, 1212
FspBI	CTAG	7 cut(s)	26, 366, 386, 702, 891, 1064, 1501
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	5 cut(s)	363, 431, 825, 1014, 1212
HaeII	RGCGCY	1 cut(s)	431
HgaI	GACGC	1 cut(s)	482
HhaI	GCGC	1 cut(s)	430
Hin1II	CATG	3 cut(s)	187, 215, 251
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HphI	GGTGA	3 cut(s)	160, 508, 583
Hpy166II	GTNNAC	4 cut(s)	94, 236, 329, 665
Hpy188I	TCNGA	8 cut(s)	117, 280, 446, 655, 688, 868, 1057, 1331
Hpy188III	TCNNGA	4 cut(s)	26, 82, 529, 637
Hpy8I	GTNNAC	4 cut(s)	94, 236, 329, 665
HpyAV	CCTTC	3 cut(s)	149, 1149, 1377
HpyCH4III	ACNGT	8 cut(s)	522, 720, 782, 793, 899, 971, 1315, 1493
HpyCH4IV	ACGT	3 cut(s)	439, 917, 1106
HpyCH4V	TGCA	6 cut(s)	437, 646, 853, 1037, 1157, 1376
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 434, 1013, 1211
HpyF3I	CTNAG	4 cut(s)	50, 654, 685, 1080
HpySE526I	ACGT	3 cut(s)	439, 917, 1106
Hsp92II	CATG	3 cut(s)	187, 215, 251
HspAI	GCGC	1 cut(s)	428
KspI	CCGCGG	1 cut(s)	1477
Kzo9I	GATC	2 cut(s)	751, 940
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	1 cut(s)	317
Lsp1109I	GCAGC	5 cut(s)	374, 417, 836, 1025, 1223
LweI	GCATC	5 cut(s)	110, 121, 871, 1046, 1144
MaeI	CTAG	7 cut(s)	26, 366, 386, 702, 891, 1064, 1501
MaeII	ACGT	3 cut(s)	439, 917, 1106
MaeIII	GTNAC	5 cut(s)	415, 496, 589, 694, 976
MalI	GATC	2 cut(s)	753, 942
MboI	GATC	2 cut(s)	751, 940
MflI	RGATCY	2 cut(s)	751, 940
MhlI	GDGCHC	2 cut(s)	322, 1292
MluCI	AATT	4 cut(s)	158, 490, 1092, 1299
MlyI	GAGTC	5 cut(s)	52, 701, 802, 1189, 1196
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	7 cut(s)	181, 544, 853, 939, 1128, 1155, 1225
Mph1103I	ATGCAT	1 cut(s)	1039
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	3 cut(s)	18, 356, 1302
MspA1I	CMGCKG	1 cut(s)	1476
MvnI	CGCG	3 cut(s)	561, 746, 1476
MwoI	GCNNNNNNNGC	4 cut(s)	55, 434, 1013, 1211
NdeII	GATC	2 cut(s)	751, 940
NlaIII	CATG	3 cut(s)	187, 215, 251
NmeAIII	GCCGAG	1 cut(s)	1271
NmuCI	GTSAC	3 cut(s)	415, 496, 589
NsiI	ATGCAT	1 cut(s)	1039
PaeR7I	CTCGAG	2 cut(s)	65, 635
PciSI	GCTCTTC	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	5 cut(s)	863, 1052, 1235, 1271, 1326
PflMI	CCANNNNNTGG	1 cut(s)	253
PkrI	GCNGC	5 cut(s)	364, 432, 826, 1015, 1213
PleI	GAGTC	5 cut(s)	51, 701, 802, 1189, 1195
PpsI	GAGTC	5 cut(s)	51, 701, 802, 1189, 1195
PsiI	TTATAA	1 cut(s)	1461
Psp124BI	GAGCTC	2 cut(s)	322, 1292
Psp1406I	AACGTT	2 cut(s)	917, 1106
PspPI	GGNCC	1 cut(s)	454
PspXI	VCTCGAGB	1 cut(s)	65
PsuI	RGATCY	2 cut(s)	751, 940
RsaI	GTAC	1 cut(s)	717
RsaNI	GTAC	1 cut(s)	716
SacI	GAGCTC	2 cut(s)	322, 1292
SacII	CCGCGG	1 cut(s)	1477
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	3 cut(s)	18, 356, 1302
SatI	GCNGC	5 cut(s)	363, 431, 825, 1014, 1212
Sau3AI	GATC	2 cut(s)	751, 940
Sau96I	GGNCC	1 cut(s)	454
SchI	GAGTC	5 cut(s)	52, 701, 802, 1189, 1196
SduI	GDGCHC	2 cut(s)	322, 1292
SfaNI	GCATC	5 cut(s)	110, 121, 871, 1046, 1144
SfcI	CTRYAG	1 cut(s)	1182
Sfr274I	CTCGAG	2 cut(s)	65, 635
Sfr303I	CCGCGG	1 cut(s)	1477
SgrBI	CCGCGG	1 cut(s)	1477
SinI	GGWCC	1 cut(s)	454
SlaI	CTCGAG	2 cut(s)	65, 635
SmlI	CTYRAG	3 cut(s)	65, 143, 635
SmoI	CTYRAG	3 cut(s)	65, 143, 635
Sse9I	AATT	4 cut(s)	158, 490, 1092, 1299
SsiI	CCGC	5 cut(s)	74, 559, 746, 1474, 1476
SspI	AATATT	1 cut(s)	465
SspMI	CTAG	7 cut(s)	26, 366, 386, 702, 891, 1064, 1501
SstI	GAGCTC	2 cut(s)	322, 1292
StyI	CCWWGG	1 cut(s)	1338
TaaI	ACNGT	8 cut(s)	522, 720, 782, 793, 899, 971, 1315, 1493
TaiI	ACGT	3 cut(s)	442, 920, 1109
TaqI	TCGA	5 cut(s)	66, 81, 636, 769, 806
TasI	AATT	4 cut(s)	158, 490, 1092, 1299
TfiI	GAWTC	5 cut(s)	863, 1052, 1235, 1271, 1326
Tru1I	TTAA	3 cut(s)	18, 356, 1302
Tru9I	TTAA	3 cut(s)	18, 356, 1302
TscAI	CASTG	3 cut(s)	516, 787, 976
TseFI	GTSAC	3 cut(s)	415, 496, 589
TseI	GCWGC	5 cut(s)	362, 430, 824, 1013, 1211
Tsp45I	GTSAC	3 cut(s)	415, 496, 589
TspDTI	ATGAA	8 cut(s)	200, 384, 391, 834, 927, 1248, 1284, 1359
TspGWI	ACGGA	1 cut(s)	1182
TspRI	CASTG	3 cut(s)	516, 787, 976
Van91I	CCANNNNNTGG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	454
XagI	CCTNNNNNAGG	1 cut(s)	143
XbaI	TCTAGA	1 cut(s)	25
XhoI	CTCGAG	2 cut(s)	65, 635
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	7 cut(s)	26, 366, 386, 702, 891, 1064, 1501
Zsp2I	ATGCAT	1 cut(s)	1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.