Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002487

Physical Location & Seq

Genomic Coordinates Reverse (-)

28720467 .. 28725240

Gene Structure 4774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1208200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTATACAAGAACAAGAACCAGCACAGGCGCGGCTCCTACTTCCAGCACCTTATGAAGGTAAGGAGGGACTTGAGGCTTTTACAATCAACTAAACTGGAGGAACTTTTTGGTTGCTGTTTTCAAAGTATTACTGGGAACAGACCTAAGCAAAAGTTGCATCTATTAGAAAGCTTGAAGAAAAGAAAATGTGAAAGTGGGAAACATAATTTTATGGAGCGACTTCTTGGAGCTGCACGCCTTCTATCACAGATGATTCTACTTGATGTTGTTTCAGTATTCAACATGGTTTCTTCTCTCTGCCAAAAACAGCAATTTGTCAAGATAGTTCAAGGAGGACTTGAGGTGTTTAGGGAGTTTTACGCTATAAATGAGGAAATTATCATTCTTGAGTATGGAAGTCACGATGGAGCTCTTTCTTTAGGGGCATCATCTGTGCTGTATCAAAGCACTGAGTCTTTCCTTGGAGTTGATGAAACTATTCACGAAACGGCAGATGCAAACCACAGTGCTGAAAAAGGTCCAGTCGAGGTCAAGGAGGATAAGACCAATTTAATGTCAGGTCTGTCCAATGACGGTGATAACAGGCAGCTGGTTGAGCGTTGCGAAGATGTTACAACCATTGGAGAGACTCCGAGCATGAAGTTTTCCGAAGAAGGTTGCTTGCTAACTGGCACGAGCTCGTCTTCAAGTTCCGATGCATCAAAACTGAAGTCTGGACCGGTTAAAGTGGCATTTATACAAGTCAAAACACCTTCACAGTCGAATACAACTGAAATCCCTTCTAAAGAAACTGACATCAATAGCAATACCAAGGAAGATTCATCATTCAGTTTGCTTTCTAGTGGAAATGTAGTCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4477

Protein Analysis

288

Amino Acids

31.81

Weight (kDa)

6.41

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50910 AT1G50910
fragaria_vesca	FvH4_3g22120 FvH4_3g22120
malus_domestica	MD03G1208200.v1.1 MD11G1222400.v1.1
prunus_persica	Prupe.4G208500_v2.0.a1
pyrus_communis	pycom11g19620
rosa_chinensis	RchiOBHm_Chr1g0330851 RchiOBHm_Chr5g0037971
rosa_laevigata	RLG00000022534 RLG00000029769 RLG00000029772 RLG00000029783 RLG00000033828
rosa_multiflora	Rmu_sc0002621.1_g000008 Rmu_sc0002621.1_g000015 Rmu_sc0002670.1_g000013 Rmu_sc0002899.1_g000005 Rmu_sc0010964.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319700
rosa_rugosa	Rorug01G0090700 Rorug05G0169800
rosa_samantha	Rh1AG112300 Rh1BG086400 Rh1BG114800 Rh1CG107700 Rh1CG109400 Rh1DG117800 Rh3BG367100 Rh3BG367300 Rh5AG258000 Rh5BG261000 Rh5CG293300 Rh5DG270200 Rh6BG121000 Rh6BG268100 Rh6CG119300
rosa_wichuraiana	Rw1G009090 Rw5G023910 Rw5G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	6
AccII	CGCG	1 cut(s)	33
AciI	CCGC	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	731
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgeI	ACCGGT	1 cut(s)	721
AgsI	TTSAA	5 cut(s)	125, 178, 283, 332, 690
AluBI	AGCT	5 cut(s)	174, 233, 413, 592, 681
AluI	AGCT	5 cut(s)	174, 233, 413, 592, 681
Alw21I	GWGCWC	2 cut(s)	415, 683
Alw26I	GTCTC	1 cut(s)	623
ApeKI	GCWGC	2 cut(s)	233, 589
ArsI	GACNNNNNNTTYG	2 cut(s)	698, 730
AsiGI	ACCGGT	1 cut(s)	721
Asp700I	GAANNNNTTC	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	2 cut(s)	521, 719
AsuHPI	GGTGA	1 cut(s)	590
AvaII	GGWCC	2 cut(s)	521, 719
BanII	GRGCYC	2 cut(s)	415, 683
BauI	CACGAG	1 cut(s)	676
BbsI	GAAGAC	1 cut(s)	678
Bbv12I	GWGCWC	2 cut(s)	415, 683
BbvI	GCAGC	2 cut(s)	220, 601
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	1 cut(s)	843
BisI	GCNGC	3 cut(s)	34, 234, 590
BlsI	GCNGC	3 cut(s)	35, 235, 591
Bme18I	GGWCC	2 cut(s)	521, 719
BmgT120I	GGNCC	2 cut(s)	521, 719
BmiI	GGNNCC	1 cut(s)	37
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	5 cut(s)	169, 437, 487, 688, 710
BmuI	ACTGGG	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	678
BpmI	CTGGAG	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	3 cut(s)	94, 362, 410
BsaJI	CCNNGG	2 cut(s)	463, 813
BsaWI	WCCGGW	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse118I	RCCGGY	1 cut(s)	721
Bse1I	ACTGG	4 cut(s)	102, 139, 524, 676
BseDI	CCNNGG	2 cut(s)	463, 813
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	4 cut(s)	102, 139, 524, 676
BseXI	GCAGC	2 cut(s)	220, 601
BsgI	GTGCAG	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	33
BshTI	ACCGGT	1 cut(s)	721
BsiHKAI	GWGCWC	2 cut(s)	415, 683
BsiSI	CCGG	1 cut(s)	722
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	623
BsmFI	GGGAC	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	415, 683
BspACI	CCGC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	721
BsrI	ACTGG	4 cut(s)	102, 139, 524, 676
BssAI	RCCGGY	1 cut(s)	721
BssECI	CCNNGG	2 cut(s)	463, 813
BssNAI	GTATAC	1 cut(s)	7
BssSI	CACGAG	1 cut(s)	676
BssT1I	CCWWGG	2 cut(s)	463, 813
Bst1107I	GTATAC	1 cut(s)	7
Bst2BI	CACGAG	1 cut(s)	676
Bst4CI	ACNGT	3 cut(s)	509, 578, 762
BstAPI	GCANNNNNTGC	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	238, 665
BstDEI	CTNAG	2 cut(s)	147, 453
BstENI	CCTNNNNNAGG	1 cut(s)	56
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	623
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 598
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	2 cut(s)	220, 601
BstV2I	GAAGAC	1 cut(s)	678
BstZ17I	GTATAC	1 cut(s)	7
BtsIMutI	CAGTG	2 cut(s)	450, 514
Cac8I	GCNNGC	2 cut(s)	238, 665
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	721
Cfr13I	GGNCC	2 cut(s)	521, 719
CspAI	ACCGGT	1 cut(s)	721
CviAII	CATG	2 cut(s)	286, 640
CviJI	RGCY	7 cut(s)	36, 79, 174, 233, 413, 592, 681
CviKI_1	RGCY	7 cut(s)	36, 79, 174, 233, 413, 592, 681
DdeI	CTNAG	2 cut(s)	147, 453
Ecl136II	GAGCTC	2 cut(s)	413, 681
Eco130I	CCWWGG	2 cut(s)	463, 813
Eco24I	GRGCYC	2 cut(s)	415, 683
Eco47I	GGWCC	2 cut(s)	521, 719
Eco53kI	GAGCTC	2 cut(s)	413, 681
Eco57I	CTGAAG	1 cut(s)	731
EcoICRI	GAGCTC	2 cut(s)	413, 681
EcoNI	CCTNNNNNAGG	1 cut(s)	56
EcoT14I	CCWWGG	2 cut(s)	463, 813
EcoT22I	ATGCAT	1 cut(s)	703
EcoT38I	GRGCYC	2 cut(s)	415, 683
ErhI	CCWWGG	2 cut(s)	463, 813
FaeI	CATG	2 cut(s)	289, 643
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	2 cut(s)	285, 639
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	34, 234, 590
FriOI	GRGCYC	2 cut(s)	415, 683
Fsp4HI	GCNGC	3 cut(s)	34, 234, 590
FspBI	CTAG	1 cut(s)	843
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	3 cut(s)	34, 234, 590
GsuI	CTGGAG	1 cut(s)	119
HapII	CCGG	1 cut(s)	722
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	2 cut(s)	289, 643
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	172
HinfI	GANTC	4 cut(s)	256, 455, 631, 821
HpaII	CCGG	1 cut(s)	722
HphI	GGTGA	1 cut(s)	590
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	3 cut(s)	636, 652, 697
Hpy188III	TCNNGA	5 cut(s)	322, 389, 404, 485, 717
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	5 cut(s)	52, 251, 650, 765, 792
HpyCH4III	ACNGT	3 cut(s)	509, 578, 762
HpyCH4V	TGCA	4 cut(s)	160, 236, 500, 701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 598
HpyF3I	CTNAG	2 cut(s)	147, 453
Hsp92II	CATG	2 cut(s)	289, 643
HspAI	GCGC	1 cut(s)	31
LmnI	GCTCC	4 cut(s)	41, 217, 230, 410
Lsp1109I	GCAGC	2 cut(s)	220, 601
LweI	GCATC	5 cut(s)	169, 437, 487, 688, 710
MaeI	CTAG	1 cut(s)	843
MaeIII	GTNAC	2 cut(s)	401, 613
MboII	GAAGA	6 cut(s)	190, 285, 620, 665, 678, 830
MhlI	GDGCHC	2 cut(s)	415, 683
MluCI	AATT	4 cut(s)	208, 314, 378, 550
MlyI	GAGTC	2 cut(s)	464, 625
MnlI	CCTC	8 cut(s)	60, 69, 94, 329, 337, 367, 523, 532
Mph1103I	ATGCAT	1 cut(s)	703
MroXI	GAANNNNTTC	1 cut(s)	480
MseI	TTAA	2 cut(s)	554, 726
MspA1I	CMGCKG	1 cut(s)	592
MspI	CCGG	1 cut(s)	722
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	157, 598
NlaIII	CATG	2 cut(s)	289, 643
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	401
NsiI	ATGCAT	1 cut(s)	703
PdmI	GAANNNNTTC	1 cut(s)	480
PfeI	GAWTC	2 cut(s)	256, 821
PinAI	ACCGGT	1 cut(s)	721
PkrI	GCNGC	3 cut(s)	35, 235, 591
PleI	GAGTC	2 cut(s)	463, 625
PpsI	GAGTC	2 cut(s)	463, 625
Psp124BI	GAGCTC	2 cut(s)	415, 683
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	2 cut(s)	521, 719
PvuII	CAGCTG	1 cut(s)	592
SacI	GAGCTC	2 cut(s)	415, 683
SaqAI	TTAA	2 cut(s)	554, 726
SatI	GCNGC	3 cut(s)	34, 234, 590
Sau96I	GGNCC	2 cut(s)	521, 719
SchI	GAGTC	2 cut(s)	464, 625
SduI	GDGCHC	2 cut(s)	415, 683
SfaNI	GCATC	5 cut(s)	169, 437, 487, 688, 710
SinI	GGWCC	2 cut(s)	521, 719
SmlI	CTYRAG	3 cut(s)	73, 341, 389
SmoI	CTYRAG	3 cut(s)	73, 341, 389
Sse9I	AATT	4 cut(s)	208, 314, 378, 550
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	843
SstI	GAGCTC	2 cut(s)	415, 683
StyI	CCWWGG	2 cut(s)	463, 813
TaaI	ACNGT	3 cut(s)	509, 578, 762
TaqI	TCGA	2 cut(s)	528, 764
TasI	AATT	4 cut(s)	208, 314, 378, 550
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	2 cut(s)	256, 821
Tru1I	TTAA	2 cut(s)	554, 726
Tru9I	TTAA	2 cut(s)	554, 726
TscAI	CASTG	2 cut(s)	457, 514
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	2 cut(s)	233, 589
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	4 cut(s)	71, 489, 656, 813
TspRI	CASTG	2 cut(s)	457, 514
VpaK11BI	GGWCC	2 cut(s)	521, 719
XagI	CCTNNNNNAGG	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	6
XmnI	GAANNNNTTC	1 cut(s)	480
XspI	CTAG	1 cut(s)	843
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.