pycom11g19620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0002487
Physical Location & Seq
Reverse (-)
22144462 .. 22148721
4260 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g19620.4

Sequence Viewer

Length: 1056 bp
ATGGTGTACAAGAACAAGAACCAGCACAGGCGCGGCTCCTATTTCCAGTACCTTATGAAGGTAAGGAGGGATTTGAGGCTTTTACAATCAACTAAACTGGAGGAACTTTTGGGTTGCTGTTTCCAAAGTATTACTGGGAAGAGACCTAAGCAAAAGTTGCACTTATTAGAAAGCTTGAAGAGAAGGAAATGTGAAAATGGAAAGCATAATTTTATGGAGCGACTTCTTGGAGCTGCACGCCTTTTATCACAGATGGTTGAGCCAATGTTGAAGGCGGCTATTGAGATATCTACGTTGCTTGCTCGATCGTTCTTCATGGGATTTTCTCTGACTGTGTTAGCTCTGCTTGCACGACTTCGAGTTTTGGTTCAACAAATTCTACTCAATGTTGTTTCAGTATTCAACATGGTTTCTTCTCTCTCCCAAAAACAGCAATCCGTCAAGATAATTCAAGGAGGACTTGAGGTGTTTAGGGAGTTTTACCCTACAAATGAGGAAATTATCATTCTTGAGTGTGTGTGGAAATCAGATAAGTTTGAATTGATTGAGAGGACACATAAGACTGAGATTGCAACTCATGATGGAGATCTTTGTTTAGGGGAATCATCAGTGCTGTATCAAAGCACTGAGTCTATCCTTGGAGATGATGAAACTATTCCCGAAACGGCAGATGCAAACCACAGTGCTGAAAAAGTTCCAGTCAAGGTCAAGGAGGATAAGATCGATTTGATGTCAGGCCTGTCCAACGACGGTGATAACAGTCAGCTGGTTGAGCATTGCGAAGATGGTCCAGACATTGGAGAGAATCCGAGCGAGAAGTTTTCCGAAGAAGGCAGCTTGCTAACAGGCACAAGCTTGTCTGCAAGTTCCGATGCATCAAAACTGAAGTCTGGACCTGTTAAAGTGGCGTTTATACAAGTGAAGCAACCTTTATACTCGACGGCGAATACAACTGAAATCCATTCTAAAGAAAATGACATCAGTAGCAGTACCAAGGAAGACCCATTATTCAGTTTGCTATCTGGTGAAAATGTAATGAGTAGTAGTCTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4477

Protein Analysis

352

Amino Acids

39.27

Weight (kDa)

5.98

Isoelectric Point (pI)

51.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 797
AccII CGCG 1 cut(s) 33
AciI CCGC 2 cut(s) 33, 275
AcsI RAATTY 1 cut(s) 375
AcuI CTGAAG 1 cut(s) 905
AfaI GTAC 3 cut(s) 8, 50, 991
AfiI CCNNNNNNNGG 2 cut(s) 58, 797
AgsI TTSAA 6 cut(s) 178, 271, 371, 403, 452, 539
AluBI AGCT 6 cut(s) 174, 233, 341, 766, 837, 855
AluI AGCT 6 cut(s) 174, 233, 341, 766, 837, 855
Alw26I GTCTC 2 cut(s) 136, 1052
AoxI GGCC 1 cut(s) 736
ApeKI GCWGC 2 cut(s) 233, 834
ApoI RAATTY 1 cut(s) 375
ArsI GACNNNNNNTTYG 2 cut(s) 872, 904
Asp700I GAANNNNTTC 2 cut(s) 654, 693
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 788, 893
AsuHPI GGTGA 2 cut(s) 764, 1037
AvaII GGWCC 2 cut(s) 788, 893
BbsI GAAGAC 1 cut(s) 1005
BbvI GCAGC 2 cut(s) 220, 846
BccI CCATC 3 cut(s) 247, 575, 779
BceAI ACGGC 2 cut(s) 681, 957
BcoDI GTCTC 2 cut(s) 136, 1052
BglII AGATCT 1 cut(s) 586
BisI GCNGC 4 cut(s) 34, 234, 276, 835
BlsI GCNGC 4 cut(s) 35, 235, 277, 836
Bme18I GGWCC 2 cut(s) 788, 893
BmgT120I GGNCC 2 cut(s) 788, 893
BmiI GGNNCC 1 cut(s) 37
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 3 cut(s) 661, 862, 884
BmuI ACTGGG 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 1005
BpmI CTGGAG 1 cut(s) 119
Bpu10I CCTNAGC 1 cut(s) 147
BpuEI CTTGAG 2 cut(s) 482, 530
Bsa29I ATCGAT 1 cut(s) 723
BsaBI GATNNNNATC 1 cut(s) 585
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 2 cut(s) 637, 993
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 797
Bse1I ACTGG 4 cut(s) 46, 102, 139, 698
Bse3DI GCAATG 1 cut(s) 775
Bse8I GATNNNNATC 1 cut(s) 585
BseCI ATCGAT 1 cut(s) 723
BseDI CCNNGG 2 cut(s) 637, 993
BseJI GATNNNNATC 1 cut(s) 585
BseLI CCNNNNNNNGG 2 cut(s) 58, 797
BseMI GCAATG 1 cut(s) 775
BseMII CTCAG 2 cut(s) 555, 618
BseNI ACTGG 4 cut(s) 46, 102, 139, 698
BseXI GCAGC 2 cut(s) 220, 846
BsgI GTGCAG 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 33
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 1 cut(s) 738
BshVI ATCGAT 1 cut(s) 723
BsiEI CGRYCG 1 cut(s) 308
BslI CCNNNNNNNGG 2 cut(s) 58, 797
BsmAI GTCTC 2 cut(s) 136, 1052
BsnI GGCC 1 cut(s) 738
Bso31I GGTCTC 1 cut(s) 136
Bsp1407I TGTACA 1 cut(s) 6
Bsp143I GATC 3 cut(s) 305, 586, 720
BspACI CCGC 2 cut(s) 33, 275
BspANI GGCC 1 cut(s) 738
BspCNI CTCAG 2 cut(s) 556, 619
BspDI ATCGAT 1 cut(s) 723
BspFNI CGCG 1 cut(s) 33
BspHI TCATGA 1 cut(s) 577
BspLI GGNNCC 1 cut(s) 37
BspTNI GGTCTC 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 775
BsrGI TGTACA 1 cut(s) 6
BsrI ACTGG 4 cut(s) 46, 102, 139, 698
BssECI CCNNGG 2 cut(s) 637, 993
BssMI GATC 3 cut(s) 305, 586, 720
BssT1I CCWWGG 2 cut(s) 637, 993
Bst4CI ACNGT 4 cut(s) 334, 683, 752, 761
Bst6I CTCTTC 2 cut(s) 134, 173
BstAPI GCANNNNNTGC 1 cut(s) 157
BstAUI TGTACA 1 cut(s) 6
BstC8I GCNNGC 4 cut(s) 238, 300, 348, 839
BstDEI CTNAG 3 cut(s) 147, 564, 627
BstENI CCTNNNNNAGG 1 cut(s) 56
BstFNI CGCG 1 cut(s) 33
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 3 cut(s) 308, 589, 723
BstMAI GTCTC 2 cut(s) 136, 1052
BstMBI GATC 3 cut(s) 305, 586, 720
BstMCI CGRYCG 1 cut(s) 308
BstMWI GCNNNNNNNGC 3 cut(s) 157, 347, 772
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 2 cut(s) 220, 846
BstV2I GAAGAC 1 cut(s) 1005
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
Bsu15I ATCGAT 1 cut(s) 723
BsuRI GGCC 1 cut(s) 738
BsuTUI ATCGAT 1 cut(s) 723
BtsIMutI CAGTG 3 cut(s) 615, 624, 688
Cac8I GCNNGC 4 cut(s) 238, 300, 348, 839
CciI TCATGA 1 cut(s) 577
CfoI GCGC 1 cut(s) 33
Cfr13I GGNCC 2 cut(s) 788, 893
ClaI ATCGAT 1 cut(s) 723
Csp6I GTAC 3 cut(s) 7, 49, 990
CviAII CATG 3 cut(s) 316, 406, 578
CviQI GTAC 3 cut(s) 7, 49, 990
DdeI CTNAG 3 cut(s) 147, 564, 627
DpnI GATC 3 cut(s) 307, 588, 722
DpnII GATC 3 cut(s) 305, 586, 720
Eam1104I CTCTTC 2 cut(s) 134, 173
EarI CTCTTC 2 cut(s) 134, 173
Eco130I CCWWGG 2 cut(s) 637, 993
Eco147I AGGCCT 1 cut(s) 738
Eco31I GGTCTC 1 cut(s) 136
Eco32I GATATC 1 cut(s) 288
Eco47I GGWCC 2 cut(s) 788, 893
Eco57I CTGAAG 1 cut(s) 905
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoRV GATATC 1 cut(s) 288
EcoT14I CCWWGG 2 cut(s) 637, 993
EcoT22I ATGCAT 1 cut(s) 877
ErhI CCWWGG 2 cut(s) 637, 993
FaeI CATG 3 cut(s) 319, 409, 581
FaiI YATR 9 cut(s) 56, 207, 215, 317, 407, 558, 579, 914, 934
FalI AAGNNNNNCTT 4 cut(s) 146, 178, 444, 476
FatI CATG 3 cut(s) 315, 405, 577
Fnu4HI GCNGC 4 cut(s) 34, 234, 276, 835
Fsp4HI GCNGC 4 cut(s) 34, 234, 276, 835
GlaI GCGC 1 cut(s) 32
GluI GCNGC 4 cut(s) 34, 234, 276, 835
GsuI CTGGAG 1 cut(s) 119
HaeIII GGCC 1 cut(s) 738
HhaI GCGC 1 cut(s) 33
Hin1II CATG 3 cut(s) 319, 409, 581
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HindIII AAGCTT 2 cut(s) 172, 853
HinfI GANTC 3 cut(s) 602, 629, 805
HphI GGTGA 2 cut(s) 764, 1037
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 6 cut(s) 330, 529, 810, 826, 871, 1055
Hpy188III TCNNGA 6 cut(s) 442, 509, 578, 659, 791, 891
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 2 cut(s) 752, 943
HpyAV CCTTC 4 cut(s) 52, 177, 265, 824
HpyCH4III ACNGT 4 cut(s) 334, 683, 752, 761
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 7 cut(s) 160, 236, 350, 572, 674, 863, 875
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 347, 772
HpyF3I CTNAG 3 cut(s) 147, 564, 627
HpySE526I ACGT 1 cut(s) 293
Hsp92II CATG 3 cut(s) 319, 409, 581
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 3 cut(s) 305, 586, 720
LmnI GCTCC 3 cut(s) 41, 217, 230
Lsp1109I GCAGC 2 cut(s) 220, 846
LweI GCATC 3 cut(s) 661, 862, 884
MaeII ACGT 1 cut(s) 293
MalI GATC 3 cut(s) 307, 588, 722
MboI GATC 3 cut(s) 305, 586, 720
MboII GAAGA 8 cut(s) 151, 190, 304, 405, 794, 839, 1010, 1042
MflI RGATCY 1 cut(s) 586
MluCI AATT 5 cut(s) 208, 375, 447, 498, 539
MlyI GAGTC 1 cut(s) 638
MmeI TCCRAC 1 cut(s) 768
MnlI CCTC 8 cut(s) 60, 69, 94, 449, 457, 487, 543, 706
Mph1103I ATGCAT 1 cut(s) 877
MroXI GAANNNNTTC 2 cut(s) 654, 693
MseI TTAA 1 cut(s) 900
MspA1I CMGCKG 1 cut(s) 766
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 3 cut(s) 157, 347, 772
NdeII GATC 3 cut(s) 305, 586, 720
NlaIII CATG 3 cut(s) 319, 409, 581
NlaIV GGNNCC 1 cut(s) 37
NsiI ATGCAT 1 cut(s) 877
PagI TCATGA 1 cut(s) 577
PceI AGGCCT 1 cut(s) 738
PdmI GAANNNNTTC 2 cut(s) 654, 693
PfeI GAWTC 2 cut(s) 602, 805
PflMI CCANNNNNTGG 1 cut(s) 797
PkrI GCNGC 4 cut(s) 35, 235, 277, 836
Ple19I CGATCG 1 cut(s) 308
PleI GAGTC 1 cut(s) 637
PpsI GAGTC 1 cut(s) 637
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 2 cut(s) 788, 893
PsuI RGATCY 1 cut(s) 586
PvuI CGATCG 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 766
RsaI GTAC 3 cut(s) 8, 50, 991
RsaNI GTAC 3 cut(s) 7, 49, 990
SaqAI TTAA 1 cut(s) 900
SatI GCNGC 4 cut(s) 34, 234, 276, 835
Sau3AI GATC 3 cut(s) 305, 586, 720
Sau96I GGNCC 2 cut(s) 788, 893
SchI GAGTC 1 cut(s) 638
SfaNI GCATC 3 cut(s) 661, 862, 884
SinI GGWCC 2 cut(s) 788, 893
SmlI CTYRAG 2 cut(s) 461, 509
SmoI CTYRAG 2 cut(s) 461, 509
Sse9I AATT 5 cut(s) 208, 375, 447, 498, 539
SseBI AGGCCT 1 cut(s) 738
SsiI CCGC 2 cut(s) 33, 275
StuI AGGCCT 1 cut(s) 738
StyI CCWWGG 2 cut(s) 637, 993
TaaI ACNGT 4 cut(s) 334, 683, 752, 761
TaiI ACGT 1 cut(s) 296
TaqI TCGA 4 cut(s) 304, 358, 723, 938
TasI AATT 5 cut(s) 208, 375, 447, 498, 539
TatI WGTACW 1 cut(s) 6
TauI GCSGC 2 cut(s) 36, 278
TfiI GAWTC 2 cut(s) 602, 805
Tru1I TTAA 1 cut(s) 900
Tru9I TTAA 1 cut(s) 900
TscAI CASTG 3 cut(s) 615, 631, 688
TseI GCWGC 2 cut(s) 233, 834
TspDTI ATGAA 3 cut(s) 71, 304, 663
TspGWI ACGGA 1 cut(s) 427
TspRI CASTG 3 cut(s) 615, 631, 688
Van91I CCANNNNNTGG 1 cut(s) 797
VpaK11BI GGWCC 2 cut(s) 788, 893
XagI CCTNNNNNAGG 1 cut(s) 56
XapI RAATTY 1 cut(s) 375
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XmnI GAANNNNTTC 2 cut(s) 654, 693
Zsp2I ATGCAT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.