Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002487

Physical Location & Seq

Genomic Coordinates Reverse (-)

13652820 .. 13662679

Gene Structure 9860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG086400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGATGAAGAAGGCCAACCGCCGCTCCAAGCAGACCGCCGACGCGTCCGCCGCCGCCGACGATTGCGAGAACCGAGTTCGCCAACTCGAAATCGAAAACAAAGCCTTTCAGCATTGGAAGCACAGAAAAAGCAAAAACCTTCGTTTGAGCTATCTAGAAAACTTGCTGCGGAAACCAATAGATTCAGGGGGTTCCCGATGGATTCTGAAGCAGAAGAGTGGTCTACAAGAACAAGAACCAGCTATACGTTCCTCGTACTTCCAGTACCTAATGAAGGTGAGGAGGGATTTGAGGCTTTTACAATCAACTAAGTTGGAGGAGATTTTGGGCTGCTGTTTCCAAAGTATCACTGGAAAGAGACACAAGCAAAAGATGCATCTATTAGAAAGTTTGAAGCGAAGAAAATGTGAAAGTGGAAAATATAATTTCATGGGACGACTTTTGGGAGCTGCACATCTTCTTTCACAGATGGTTGAACCAATGTTGAAGGCTGCTATGTATCCTTTTCTTATTGTATCTACATTGCTGGCTCGATCTTTTTTCATGGGATTCTCTTTGACTATCTTAGCTTTGCTTGCACGACTTCGAGTTTTGGTTCAACAGATTCTGCTTGATGTTGTTTCAGTATTCAACATGGTTTCTTCTCTCTCCCAAAAGAAGCAATCAGTTAAAATAAATCAAGAAGGTGTTGAGGTCTTCAGGGAGTTTTACCCTACACAAGAGGATTTTATCACTCTGGAGTGCGTGTGGAAATCTGATAAATTTGACTTGCTTGAGAGGACACAAAAGAGCCAGATTGCAAGTCCTGGTGTGGATCTTTCTTTAGGGACATCATCTGTGCTTTATCGAAGTATTGAGTCTTCCCTTGGAGATGACGAAATTATGTCTGAGAGGCCAGATGAAAAACATACTGTTGAGCTCGATCAAGTTCAGGTCATGGAAAACAACATTGATCTATTGTCTGGTCCATCCGATGGTGATGATGTAAAGCTGGTTGAATCTTGTGGGGAGGGTTCAAACAAGGAGACTCCTAGCAAAGAGCTTTCCCAAGAAGGTTGCTTGCCACAAGTCTCTTCAGGTTCAGATGCATCAAAACTGAAGTCTGGACCAGTTAAAGTGGCATCCGTACAAATTAAAAAGCCCATAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4477

Protein Analysis

383

Amino Acids

43.3

Weight (kDa)

9.14

Isoelectric Point (pI)

60.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50910 AT1G50910
fragaria_vesca	FvH4_3g22120 FvH4_3g22120
malus_domestica	MD03G1208200.v1.1 MD11G1222400.v1.1
prunus_persica	Prupe.4G208500_v2.0.a1
pyrus_communis	pycom11g19620
rosa_chinensis	RchiOBHm_Chr1g0330851 RchiOBHm_Chr5g0037971
rosa_laevigata	RLG00000022534 RLG00000029769 RLG00000029772 RLG00000029783 RLG00000033828
rosa_multiflora	Rmu_sc0002621.1_g000008 Rmu_sc0002621.1_g000015 Rmu_sc0002670.1_g000013 Rmu_sc0002899.1_g000005 Rmu_sc0010964.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319700
rosa_rugosa	Rorug01G0090700 Rorug05G0169800
rosa_samantha	Rh1AG112300 Rh1BG086400 Rh1BG114800 Rh1CG107700 Rh1CG109400 Rh1DG117800 Rh3BG367100 Rh3BG367300 Rh5AG258000 Rh5BG261000 Rh5CG293300 Rh5DG270200 Rh6BG121000 Rh6BG268100 Rh6CG119300
rosa_wichuraiana	Rw1G009090 Rw5G023910 Rw5G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	974
AccBSI	CCGCTC	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	223
AccII	CGCG	1 cut(s)	44
AciI	CCGC	7 cut(s)	19, 22, 36, 48, 51, 54, 169
AclWI	GGATC	1 cut(s)	822
AcsI	RAATTY	1 cut(s)	761
AcuI	CTGAAG	4 cut(s)	227, 682, 1059, 1118
AfaI	GTAC	3 cut(s)	257, 266, 1128
AfiI	CCNNNNNNNGG	2 cut(s)	274, 974
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	7 cut(s)	394, 476, 487, 599, 631, 998, 1017
AjnI	CCWGG	1 cut(s)	805
AluBI	AGCT	7 cut(s)	150, 242, 449, 569, 919, 991, 1042
AluI	AGCT	7 cut(s)	150, 242, 449, 569, 919, 991, 1042
Alw21I	GWGCWC	1 cut(s)	921
Alw26I	GTCTC	3 cut(s)	352, 1019, 1075
AlwI	GGATC	1 cut(s)	822
AlwNI	CAGNNNCTG	1 cut(s)	607
AoxI	GGCC	2 cut(s)	12, 893
ApeKI	GCWGC	4 cut(s)	166, 330, 449, 491
ApoI	RAATTY	1 cut(s)	761
ArsI	GACNNNNNNTTYG	2 cut(s)	1085, 1117
AspS9I	GGNCC	2 cut(s)	965, 1106
AsuHPI	GGTGA	2 cut(s)	289, 989
AvaII	GGWCC	2 cut(s)	965, 1106
BanII	GRGCYC	1 cut(s)	921
BarI	GAAGNNNNNNTAC	2 cut(s)	844, 876
BbsI	GAAGAC	2 cut(s)	688, 852
Bbv12I	GWGCWC	1 cut(s)	921
BbvI	GCAGC	4 cut(s)	153, 317, 436, 478
BccI	CCATC	4 cut(s)	192, 463, 968, 976
BciT130I	CCWGG	1 cut(s)	807
BciVI	GTATCC	1 cut(s)	510
BcoDI	GTCTC	3 cut(s)	352, 1019, 1075
BfaI	CTAG	2 cut(s)	155, 1032
BfuI	GTATCC	1 cut(s)	510
BisI	GCNGC	7 cut(s)	22, 51, 54, 167, 331, 450, 492
BlsI	GCNGC	7 cut(s)	23, 52, 55, 168, 332, 451, 493
Bme1390I	CCNGG	1 cut(s)	807
Bme18I	GGWCC	2 cut(s)	965, 1106
BmgT120I	GGNCC	2 cut(s)	965, 1106
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	807
BmsI	GCATC	5 cut(s)	363, 385, 1075, 1097, 1130
BpiI	GAAGAC	2 cut(s)	688, 852
BpmI	CTGGAG	1 cut(s)	758
BpuEI	CTTGAG	1 cut(s)	794
BsaJI	CCNNGG	1 cut(s)	865
BsaXI	ACNNNNNCTCC	4 cut(s)	8, 38, 731, 761
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 974
Bse1I	ACTGG	3 cut(s)	262, 355, 1109
Bse3DI	GCAATG	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	807
BseDI	CCNNGG	1 cut(s)	865
BseGI	GGATG	2 cut(s)	968, 1121
BseLI	CCNNNNNNNGG	2 cut(s)	274, 974
BseMI	GCAATG	1 cut(s)	521
BseMII	CTCAG	1 cut(s)	879
BseNI	ACTGG	3 cut(s)	262, 355, 1109
BseRI	GAGGAG	2 cut(s)	295, 332
BseXI	GCAGC	4 cut(s)	153, 317, 436, 478
BsgI	GTGCAG	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	44
BshFI	GGCC	2 cut(s)	14, 895
BsiHKAI	GWGCWC	1 cut(s)	921
BslFI	GGGAC	2 cut(s)	447, 841
BslI	CCNNNNNNNGG	2 cut(s)	274, 974
BsmAI	GTCTC	3 cut(s)	352, 1019, 1075
BsmFI	GGGAC	2 cut(s)	447, 841
BsnI	GGCC	2 cut(s)	14, 895
Bsp1286I	GDGCHC	1 cut(s)	921
Bsp143I	GATC	4 cut(s)	533, 814, 922, 952
BspACI	CCGC	7 cut(s)	19, 22, 36, 48, 51, 54, 169
BspANI	GGCC	2 cut(s)	14, 895
BspCNI	CTCAG	1 cut(s)	880
BspFNI	CGCG	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	193
BspPI	GGATC	1 cut(s)	822
BsrBI	CCGCTC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	521
BsrI	ACTGG	3 cut(s)	262, 355, 1109
BssECI	CCNNGG	1 cut(s)	865
BssMI	GATC	4 cut(s)	533, 814, 922, 952
BssT1I	CCWWGG	1 cut(s)	865
Bst2UI	CCWGG	1 cut(s)	807
Bst4CI	ACNGT	1 cut(s)	913
Bst6I	CTCTTC	2 cut(s)	209, 1078
BstAPI	GCANNNNNTGC	1 cut(s)	373
BstC8I	GCNNGC	3 cut(s)	528, 576, 1061
BstDEI	CTNAG	3 cut(s)	309, 565, 888
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstF5I	GGATG	2 cut(s)	968, 1121
BstFNI	CGCG	1 cut(s)	44
BstKTI	GATC	4 cut(s)	536, 817, 925, 955
BstMAI	GTCTC	3 cut(s)	352, 1019, 1075
BstMBI	GATC	4 cut(s)	533, 814, 922, 952
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 118, 373, 575
BstNI	CCWGG	1 cut(s)	807
BstSCI	CCNGG	1 cut(s)	805
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	4 cut(s)	153, 317, 436, 478
BstV2I	GAAGAC	2 cut(s)	688, 852
BstX2I	RGATCY	1 cut(s)	814
BstYI	RGATCY	1 cut(s)	814
BsuI	GTATCC	1 cut(s)	510
BsuRI	GGCC	2 cut(s)	14, 895
BtsCI	GGATG	2 cut(s)	968, 1121
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	3 cut(s)	528, 576, 1061
CaiI	CAGNNNCTG	1 cut(s)	607
Cfr13I	GGNCC	2 cut(s)	965, 1106
CseI	GACGC	2 cut(s)	33, 50
Csp6I	GTAC	3 cut(s)	256, 265, 1127
CviAII	CATG	4 cut(s)	430, 544, 634, 937
CviQI	GTAC	3 cut(s)	256, 265, 1127
DdeI	CTNAG	3 cut(s)	309, 565, 888
DpnI	GATC	4 cut(s)	535, 816, 924, 954
DpnII	GATC	4 cut(s)	533, 814, 922, 952
Eam1104I	CTCTTC	2 cut(s)	209, 1078
EarI	CTCTTC	2 cut(s)	209, 1078
EciI	GGCGGA	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	919
Eco130I	CCWWGG	1 cut(s)	865
Eco24I	GRGCYC	1 cut(s)	921
Eco47I	GGWCC	2 cut(s)	965, 1106
Eco53kI	GAGCTC	1 cut(s)	919
Eco57I	CTGAAG	4 cut(s)	227, 682, 1059, 1118
EcoICRI	GAGCTC	1 cut(s)	919
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	805
EcoT14I	CCWWGG	1 cut(s)	865
EcoT22I	ATGCAT	2 cut(s)	378, 1090
EcoT38I	GRGCYC	1 cut(s)	921
ErhI	CCWWGG	1 cut(s)	865
FaeI	CATG	4 cut(s)	433, 547, 637, 940
FaqI	GGGAC	2 cut(s)	447, 841
FatI	CATG	4 cut(s)	429, 543, 633, 936
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	7 cut(s)	22, 51, 54, 167, 331, 450, 492
FokI	GGATG	2 cut(s)	955, 1108
FriOI	GRGCYC	1 cut(s)	921
Fsp4HI	GCNGC	7 cut(s)	22, 51, 54, 167, 331, 450, 492
FspBI	CTAG	2 cut(s)	155, 1032
GluI	GCNGC	7 cut(s)	22, 51, 54, 167, 331, 450, 492
GsuI	CTGGAG	1 cut(s)	758
HaeIII	GGCC	2 cut(s)	14, 895
HgaI	GACGC	2 cut(s)	33, 50
Hin1II	CATG	4 cut(s)	433, 547, 637, 940
HinfI	GANTC	7 cut(s)	182, 202, 549, 604, 857, 998, 1027
HphI	GGTGA	2 cut(s)	289, 989
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	5 cut(s)	207, 757, 889, 973, 1084
Hpy188III	TCNNGA	5 cut(s)	155, 195, 680, 737, 1104
Hpy8I	GTNNAC	1 cut(s)	224
Hpy99I	CGWCG	2 cut(s)	44, 62
HpyAV	CCTTC	6 cut(s)	4, 149, 268, 481, 677, 1046
HpyCH4III	ACNGT	1 cut(s)	913
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	5 cut(s)	376, 452, 578, 800, 1088
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 118, 373, 575
HpyF3I	CTNAG	3 cut(s)	309, 565, 888
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	4 cut(s)	433, 547, 637, 940
Kzo9I	GATC	4 cut(s)	533, 814, 922, 952
LmnI	GCTCC	2 cut(s)	29, 446
Lsp1109I	GCAGC	4 cut(s)	153, 317, 436, 478
LweI	GCATC	5 cut(s)	363, 385, 1075, 1097, 1130
MaeI	CTAG	2 cut(s)	155, 1032
MaeII	ACGT	1 cut(s)	247
MalI	GATC	4 cut(s)	535, 816, 924, 954
MbiI	CCGCTC	1 cut(s)	24
MboI	GATC	4 cut(s)	533, 814, 922, 952
MboII	GAAGA	8 cut(s)	19, 226, 411, 449, 633, 688, 852, 1065
MflI	RGATCY	1 cut(s)	814
MhlI	GDGCHC	1 cut(s)	921
MluCI	AATT	4 cut(s)	424, 761, 879, 1131
MluI	ACGCGT	1 cut(s)	42
MlyI	GAGTC	2 cut(s)	866, 1021
MmeI	TCCRAC	1 cut(s)	294
Mph1103I	ATGCAT	2 cut(s)	378, 1090
MseI	TTAA	3 cut(s)	669, 1113, 1134
MspR9I	CCNGG	1 cut(s)	807
MvaI	CCWGG	1 cut(s)	807
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	4 cut(s)	50, 118, 373, 575
NdeII	GATC	4 cut(s)	533, 814, 922, 952
NlaIII	CATG	4 cut(s)	433, 547, 637, 940
NlaIV	GGNNCC	1 cut(s)	193
NsiI	ATGCAT	2 cut(s)	378, 1090
PfeI	GAWTC	5 cut(s)	182, 202, 549, 604, 998
PflMI	CCANNNNNTGG	1 cut(s)	974
PkrI	GCNGC	7 cut(s)	23, 52, 55, 168, 332, 451, 493
PleI	GAGTC	2 cut(s)	865, 1021
PpsI	GAGTC	2 cut(s)	865, 1021
Psp124BI	GAGCTC	1 cut(s)	921
Psp6I	CCWGG	1 cut(s)	805
PspGI	CCWGG	1 cut(s)	805
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	965, 1106
PsrI	GAACNNNNNNTAC	2 cut(s)	228, 260
PstNI	CAGNNNCTG	1 cut(s)	607
PsuI	RGATCY	1 cut(s)	814
RsaI	GTAC	3 cut(s)	257, 266, 1128
RsaNI	GTAC	3 cut(s)	256, 265, 1127
SacI	GAGCTC	1 cut(s)	921
SaqAI	TTAA	3 cut(s)	669, 1113, 1134
SatI	GCNGC	7 cut(s)	22, 51, 54, 167, 331, 450, 492
Sau3AI	GATC	4 cut(s)	533, 814, 922, 952
Sau96I	GGNCC	2 cut(s)	965, 1106
SchI	GAGTC	2 cut(s)	866, 1021
ScrFI	CCNGG	1 cut(s)	807
SduI	GDGCHC	1 cut(s)	921
SfaNI	GCATC	5 cut(s)	363, 385, 1075, 1097, 1130
SinI	GGWCC	2 cut(s)	965, 1106
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
Sse9I	AATT	4 cut(s)	424, 761, 879, 1131
SsiI	CCGC	7 cut(s)	19, 22, 36, 48, 51, 54, 169
SspMI	CTAG	2 cut(s)	155, 1032
SstI	GAGCTC	1 cut(s)	921
StyD4I	CCNGG	1 cut(s)	805
StyI	CCWWGG	1 cut(s)	865
TaaI	ACNGT	1 cut(s)	913
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	6 cut(s)	87, 93, 532, 586, 847, 921
TasI	AATT	4 cut(s)	424, 761, 879, 1131
TauI	GCSGC	3 cut(s)	24, 53, 56
TfiI	GAWTC	5 cut(s)	182, 202, 549, 604, 998
Tru1I	TTAA	3 cut(s)	669, 1113, 1134
Tru9I	TTAA	3 cut(s)	669, 1113, 1134
TscAI	CASTG	1 cut(s)	355
TseI	GCWGC	4 cut(s)	166, 330, 449, 491
TspDTI	ATGAA	5 cut(s)	20, 287, 418, 532, 915
TspGWI	ACGGA	1 cut(s)	1114
TspRI	CASTG	1 cut(s)	355
Van91I	CCANNNNNTGG	1 cut(s)	974
VpaK11BI	GGWCC	2 cut(s)	965, 1106
XagI	CCTNNNNNAGG	1 cut(s)	272
XapI	RAATTY	1 cut(s)	761
XbaI	TCTAGA	1 cut(s)	154
XcmI	CCANNNNNNNNNTGG	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	223
XspI	CTAG	2 cut(s)	155, 1032
Zsp2I	ATGCAT	2 cut(s)	378, 1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.